BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01725.1 Length=453 Score E Sequences producing significant alignments: (Bits) Value Ahg470102 jgi|Araly1|470102|fgenesh2_kg.1__56__AT1G01725.1 348 2e-95 > Ahg470102 jgi|Araly1|470102|fgenesh2_kg.1__56__AT1G01725.1 Length=369 Score = 348 bits (188), Expect = 2e-95 Identities = 244/269 (91%), Gaps = 12/269 (4%) Strand=Plus/Plus Query 6 CACCGGAATTGTTCTTTCTGGGAAC-G-AA-A-ACATCGATGAATCCCCAAATTGAAAAG 61 ||||||||||||||||||||||||| | || | | | |||||||||||||||| |||||| Sbjct 1 CACCGGAATTGTTCTTTCTGGGAACAGCAAGAGAGAGCGATGAATCCCCAAATAGAAAAG 60 Query 62 GTGGTGAAGGTAACCAGTGTGGTGGCGACTGCTGTTGTATCGTACTTCCTCTTAACCGCT 121 ||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 61 GTGGTGAGGGTAACGAGTGTGGTGGCCACTGCTGTTGTATCCTACTTCCTCTTAACCGCT 120 Query 122 GATTACGGTCCAGAGCCCAACGCTCTTGATCCTATCAGACAGAGGATACTTTCAGCGCAA 181 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 GATTACGGTCCCGAGCCCAACGCTCTCGATCCTATCAGACAGAGGATACTTTCAGCGCAG 180 Query 182 GATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAGTCCGACAAGTGACAATGGACAGTA 241 ||||||||||||||||||||||||||||||||||| |||||||||| ||| | | | Sbjct 181 GATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAATCCGACAAGT--CAA-GT---G-A 233 Query 242 ACATGTAGCTCAACATCAGACTTCATCTT 270 ||||||||||||||||| |||||||||| Sbjct 234 -CATGTAGCTCAACATCATACTTCATCTT 261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16368747681 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5