BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01780.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918777 jgi|Araly1|918777|scaffold_100058.1 1072 0.0
Ahg470098 jgi|Araly1|470098|fgenesh2_kg.1__52__AT1G01770.1 52.8 4e-06
> Ahg918777 jgi|Araly1|918777|scaffold_100058.1
Length=658
Score = 1072 bits (580), Expect = 0.0
Identities = 632/658 (96%), Gaps = 0/658 (0%)
Strand=Plus/Plus
Query 139 aaaaagataaaacaaaaaaaaTGTCTTTCACAGGAACTCTCGACAAATGCAATGTTTGTG 198
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAAAAGACCCAACAAAAAAAATGTCTTTCACAGGAACTCTCGACAAATGCAACGTTTGTG 60
Query 199 ATAAGACAGTCTATGTGGTGGACATGTTGTCCATTGAAGGAATGCCTTACCACAAGTCTT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAAGACAGTCTATGTGGTGGACATGTTGTCCATTGAAGGAATGCCTTACCACAAGTCTT 120
Query 259 GCTTCAGGTGTACCCATTGCAAAGGAACCCTTCAGATGAGCAACTATTCCTCCATGGACG 318
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GCTTCAGGTGCACCCATTGCAAAGGAACCCTTGTGATGAGCAACTATTCCTCCATGGACG 180
Query 319 GAGTTTTGTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGCAATTTCAGCA 378
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GAGTTTTGTACTGCAAGACGCATTTTGAGCAGCTCTTCAAGGAATCTGGCAATTTCAGCA 240
Query 379 AAAACTTTCAACCAGGAAAAACTGAGAAGCCAGAGCTGACTAGGACTCCCAGCAAGATAT 438
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 241 AAAACTTTCAACCAGGAAAAACTGAGAAGCCGGAGCTGACTAAGACTCCCAGCAAGATAT 300
Query 439 CTTCCATCTTCTGTGGAACACAAGACAAGTGTGCCGCTTGCGAAAAAACTGTTTACCCTC 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCCATCTTCTGTGGAACACAAGACAAGTGTGCCGCTTGCGAAAAAACTGTTTACCCTC 360
Query 499 TTGAAAAGATACAAATGGAAGGAGAATGCTTCCACAAGACATGTTTCCGGTGCGCTCACG 558
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 TTGAAAAGATACAAATGGAAGGAGAATGCTTCCACAAGACATGTTTCCGATGCGCTCACG 420
Query 559 GTGGGTGTACGCTGACTCACTCCTCCTACGCCTCCTTAGATAGCGTTCTCTATTGCCGAC 618
||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 421 GTGGGTGTACGCTCACTCACTCCTCCTACGCCTCCCTGGATAGCGTTCTCTATTGCCGGC 480
Query 619 ATCACTTTAACCAACTCTTCATGGAGAAAGGAAACTACGCTCACGTCCTCCAAGCCGCCA 678
||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 481 ATCACTTCAACCAACTGTTCCTGGAGAAAGGAAACTACGCTCACGTCCTCCAAGCTGCCA 540
Query 679 ATCACCGTCGCACAGCCTCAGGCAACACTCTTCCACCGGAACCTACCGAAGACGTCGCCG 738
| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 541 ACCACCGTCGCACAGCCTCAGGCAACACACTTCCACCGGAACCTACCGAAGACATCGCCG 600
Query 739 TGGAGGCCAAGGAAGAGAATGGCGTTTCAGAGTCTTGAATATCTCTTACATGAGTGTT 796
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 601 TCGAGGCCAAGGAAGAGAATGGCGTTTCACAGTCTTGAATATCTCTTACCTGAGTGTT 658
> Ahg470098 jgi|Araly1|470098|fgenesh2_kg.1__52__AT1G01770.1
Length=2298
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 87 AGGATCTTGGAGAAGGAAGGAAACAACA 114
||||||||||||||||||||||||||||
Sbjct 2271 AGGATCTTGGAGAAGGAAGGAAACAACA 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5