BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01790.1 Length=3892 Score E Sequences producing significant alignments: (Bits) Value Ahg311263 jgi|Araly1|311263|fgenesh1_pm.C_scaffold_1000043 5251 0.0 Ahg490505 jgi|Araly1|490505|fgenesh2_kg.6__3639__AT4G00630.1 2278 0.0 > Ahg311263 jgi|Araly1|311263|fgenesh1_pm.C_scaffold_1000043 Length=3516 Score = 5251 bits (2843), Expect = 0.0 Identities = 3138/3280 (96%), Gaps = 21/3280 (1%) Strand=Plus/Plus Query 403 TGCCGATAGTAATGATCATCGGATCGGGGAATCTTCCGAAAGTAGTGATGAAACTGAAGC 462 |||||||| || | || |||| ||| |||||||||||| |||||||||||||| ||| || Sbjct 243 TGCCGATACTAGTAATGATCGAATCAGGGAATCTTCCGGAAGTAGTGATGAAAGTGATGC 302 Query 463 TACAGATTT-------G--AAAGATGCGAGAGTGGAAAACGACACTGATAGTTTGGAGGA 513 ||||||||| | ||||||| ||||| |||||||| ||||||||||||||||| Sbjct 303 TACAGATTTGAAAGAAGAAAAAGATGTTAGAGTCGAAAACGAAACTGATAGTTTGGAGGA 362 Query 514 ACTCAAGGAGTTACTACACAAGGCAATTAAAGAATTGGAAGTTGCTAGGCTCAATAGTAC 573 ||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| Sbjct 363 ACTCAAGGAGTTACTTCAAAAGGCAATTAAAGAGTTGGAAGTTGCTAGACTCAATAGTAC 422 Query 574 CATGTTTGAGGAAAAGGCTCAGAGAATCTCAGAAAGAGCCATAGCACTCAAGGATGAAGC 633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 CATGTTTGAGGAAAAGGCTCAGAGAATCTCAGAAAGAGCCATAGCACTCAAGGATGAAGC 482 Query 634 TGCTACTGCTTGGCTTGACGTAAACAAAACCCTTGATGTCATTCGAGATACTGTTTATGA 693 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 483 TGCTACTGCTTGGCATGACGTAAACAAAACCCTTGATGTCATTCGAGATACTGTTGATGA 542 Query 694 GGAGGCTCTTGCTAAAGAAGCTGTTCAAACGGCTACTATGGCCCTGTCTCTGGCTGAAGC 753 ||| |||||||||||||||||||||||| |||||||||||| | ||||| |||||||| Sbjct 543 GGAATCTCTTGCTAAAGAAGCTGTTCAAAAGGCTACTATGGCGTTATCTCTTGCTGAAGC 602 Query 754 TAGGCTTCAGGTTATAGTGGAATCACTTGAAGCTGGTGCAGGGAATGATATTCCACATGT 813 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 TAGGCTCCAGGTTATAGTGGAATCACTTGAAGCTGGTGCAGGGAATGATATTCCACATGT 662 Query 814 GTCTGAAGAGACTGAGGAAACA-ATAGATGTTAATGATAAAGAAGAAGCTCTTTTAGCTG 872 |||||||||||||||| ||||| || ||||| || ||||||||||||||||||||||||| Sbjct 663 GTCTGAAGAGACTGAGAAAACAGAT-GATGTGAAAGATAAAGAAGAAGCTCTTTTAGCTG 721 Query 873 CCAAGGATGATATTAAAGAATGCCAAGTT-AATTTAGATAA-TTGTGAGTCCCAACTGAG 930 |||||||||||||||||||||| ||| || |||||||| || ||||||||||||||| || Sbjct 722 CCAAGGATGATATTAAAGAATGTCAA-TTGAATTTAGA-AATTTGTGAGTCCCAACTAAG 779 Query 931 -TGCTTTGCTGAGCAAAAAAGACGAGCTGCAAAAGGAAGTGGACAAGTTGAATGAGTTCG 989 || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 780 TTG-TTTGCAGAGCAAAAAAGACGAGCTGCAGAAGGAAGTGGACAAGTTGAATGAGTTCG 838 Query 990 CTGAGACAATACAGATCAGTTCGTTGAAAGCCGAGGAGGATGTTACCAATATTATGAAAT 1049 |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 839 CTGAGACAATACAGATCAGTGCGTTGAAAGCCGAGGAGGATGTCGCCAATATTATGAAAT 898 Query 1050 TGGCTGAACAAGCTGTAGCATTTGAGCTTGAGGCTACTCAACGCGTTAATGATGCAGAGA 1109 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 899 TGGCTGAACAAGCTGTAGCATTTGAGCTTGAGGCTACTCAACGTGTTAATGATGCAGAGA 958 Query 1110 TTGCTTTACAGAGAGCAGAGAAGTCTCTCTCCATTTCTCAGACCCCAGAGGAAACTCAGG 1169 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TTGCTTTGCAGAGAGCTGAGAAGTCTCTCTCCATTTCTCAGACCCCAGAGGAAACTCAGG 1018 Query 1170 GCCAACTCTCGGATGAAGAAACTTCTC-AGGAGGATGCGATGGTACTTTCAGGTAACGTT 1228 ||||||||||||||||||||| || | | ||||||| | |||||||||||||||||||| Sbjct 1019 GCCAACTCTCGGATGAAGAAA-GTCACGACGAGGATGAGGTGGTACTTTCAGGTAACGTT 1077 Query 1229 GAAGATGTTACCCATCAGGTTGAAAAAGAATCACCTAAAGATGGAGATCTACCAGTGGTA 1288 |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1078 GAAGATGTTAGCCATCAGGTTGAAAAAGAATCACCTATTGATGGAGATCTATCAGTGGTA 1137 Query 1289 CAGATCACAGCTGAACTTGTGCCTGATATAGTTGGTCAGAGGAATAAAAAACTAACTCAG 1348 |||| |||| |||| || ||||||||| |||||||||||| |||| |||||||||||||| Sbjct 1138 CAGAACACATCTGATCTAGTGCCTGATTTAGTTGGTCAGAAGAATCAAAAACTAACTCAG 1197 Query 1349 CCTTATGAGTCAAGCGATCATGAGAATGGAAAGCCAAGTGTAGAGTCTTCTAAAGTGGTT 1408 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 CCTTATGAGCCAAGCGATAATGAGAATGGAAAGCCAAGTGTAGAGTCTTCTAAAGTGGTT 1257 Query 1409 GAAGCAGATTCTGAAAAGCCAAAGATTAATGTTCAGACaaaaaaaCAGGAAACTCAAAAA 1468 |||||||| | ||||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct 1258 GAAGCAGAATGTGAAAAGCCAAAGATTAATGTTCAGACGAAAAAACAGGAAACACAGAAA 1317 Query 1469 GATCTGCCAAAGGAGGGTTCCTCTCTTAATTCTCCCAAGGCATCGTTTAATAAATCCTCC 1528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 GATCTGCCAAAGGAGGGTTCCTCTCTTAATTCTCCCAAGGCATCGTTTAATAAATCCTCC 1377 Query 1529 CGTTTCTTTTCTGCATCTTTCTTCTCTTCTAATCCAGATGGGACCGCGACAGTGTTTGGT 1588 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1378 CGTTTCTTTTCTGCATCTTTCTTCTCTTCCAATCCAGATGGGACCGCGACAGTGTTTGCT 1437 Query 1589 AGTCTGGTTGGTTCTGTCAAACAGCAATGGCCCAAACTAGTTCTTGGGCTTGCTCTTCTT 1648 ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| Sbjct 1438 AGTCTGGTTGGTTCTGTCAAACAGCAATGGCCCAAGCTAGTACTTGGGTTTGCTCTTCTT 1497 Query 1649 GGAGCAGGACTGACATTATACTCCAATGGAGTAGGGGGGAACAACCAGTTGCTTCAACAG 1708 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1498 GGAGCAGGACTGACATTATACTCCAATGGAGTAGGGGGGAACAACCAGCTGCTTCAACAG 1557 Query 1709 CCAGATGTTACCAGCACTAGTACAGAAGATGTCTCTTCAAGTACGAAGCCACTGATCCGG 1768 |||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| Sbjct 1558 CCAGATGTTACCAGCACTAGTACAGAAGATATCTCTTCCAGTACGAAGCCATTGATCCGG 1617 Query 1769 CAAGTGCAGAAACTTCCCAAGAGAATTAAGAAACTACTTGAGATGATCCCTCACCAGGAG 1828 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1618 CAAGTGCAGAAACTTCCCAAGAGATTTAAGAAACTACTTGAGATGCTCCCTCACCAGGAG 1677 Query 1829 GTCAATGAGGAAGAAGCTTCCCTCTTTGACTTTTTGTGGTTACTGCTAGCAAGCGTCATA 1888 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 1678 GTCAATGAGGAAGAAGCTTCCCTTTTTGATTTTTTGTGGTTACTGCTAGCAAGCGTTATA 1737 Query 1889 TTTGTGCCTCTATTTCAGAAAATTCCTGGAGGCAGCCCTGTTCTTGGGTATTTGGCAGCT 1948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1738 TTTGTGCCTCTATTTCAGAAAATTCCTGGAGGCAGCCCTGTTCTTGGGTATTTGGCAGCT 1797 Query 1949 GGAATTCTGATTGGTCCGTATGGTCTTTCGATAATCCGTAATGTGCACGGAACCAGGGCC 2008 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1798 GGAATTCTGATTGGTCCTTATGGTCTTTCCATAATCCGTAATGTGCACGGAACCAGGGCC 1857 Query 2009 ATCGCAGAATTTGGAGTAGTTTTCTTGCTTTTCAACATCGGCCTTGAGCTATCTGTTGAA 2068 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 ATCGCAGAATTTGGAGTTGTTTTCTTGCTTTTCAACATCGGCCTTGAGCTATCTGTTGAA 1917 Query 2069 AGACTGAGTTCCATGAAGAAATATGTTTTTGGATTAGGCTCAGCTCAGGTTCTGGTGACG 2128 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1918 AGACTGAGTTCCATGAAGAAATATGTTTTTGGATTAGGCTCCGCTCAGGTTCTGGTCACA 1977 Query 2129 GCAGCAGTAGTTGGATTGCTTGCCCATTATGTTGCTGGTCAGGCTGGTCCAGCAGCAATA 2188 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1978 GCAGCAGTAGTTGGATTGATTGCCCATTATGTTGCTGGTCAGGCTGGTCCAGCAGCAATA 2037 Query 2189 GTGATTGGAAATGGCCTGGCTCTGTCGTCCACTGCTGTTGTCCTTCAGGTTCTACAAGAA 2248 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2038 GTGATTGGAAATGGCCTGGCTCTGTCCTCCACTGCTGTTGTCCTTCAGGTTCTACAAGAA 2097 Query 2249 CGAGGCGAGAGTACATCTAGACATGGAAGGGCTTCATTTTCCGTCTTGCTTTTCCAGGAT 2308 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2098 CGAGGTGAGAGTACATCTAGACATGGAAGGGCTTCATTTTCCGTCTTGCTTTTCCAGGAT 2157 Query 2309 CTAGCTGTAGTTGTTTTACTGATTCTCATCCCACTTATTTCACCTAATTCATCGAAAGGA 2368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2158 CTAGCTGTAGTTGTTTTACTGATTCTCATCCCACTTATTTCACCTAATTCATCGAAAGGA 2217 Query 2369 GGGATTGGATTTCAAGCCATTGCTGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTG 2428 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2218 GGGATTGGATTCCAAGCCATTGCTGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTG 2277 Query 2429 GCTATTACTGCAATAATTGCTGGTGGCCGTCTACTTCTTCGACCAATCTACAAGCAAATT 2488 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2278 GCTATTACTGCCATAATTGCTGGTGGCCGTCTTCTTCTTCGACCAATCTACAAGCAAATT 2337 Query 2489 GCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACT 2548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2338 GCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACT 2397 Query 2549 AGTTTACTGACAGCTAGGGCTGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTA 2608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2398 AGTTTACTGACAGCTAGGGCTGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTA 2457 Query 2609 CTCCTTGCAGAGACAGAATTTTCGTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGT 2668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2458 CTCCTTGCAGAGACAGAATTTTCGTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGT 2517 Query 2669 CTTCTGTTGGGACTCTTCTTCATGACGGTTGGAATGTCAATTGATCCGAAATTACTTCTC 2728 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2518 CTTCTGCTGGGACTCTTCTTCATGACGGTTGGCATGTCAATTGATCCGAAATTACTTCTC 2577 Query 2729 TCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATAGTGGGCAAA-ACTATGTT 2787 ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| Sbjct 2578 TCCAACTTCCCTGTCATAGTGGGAACTTTGGGACTCTTGATTGTGGG-AAAGACTATGTT 2636 Query 2788 AGTCGTGATTATGGGAAAATTGTTCGGCATATCAATAATATCTGCAATTCGGGTCGGTCT 2847 ||||||||||||||||||| |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 2637 AGTCGTGATTATGGGAAAAGTGTTTGGCATTTCAATTATATCTGCAATTCGAGTCGGTCT 2696 Query 2848 ACTATTGGCCCCAGGCGGAGAGTTTGCATTTGTTGCTTTCGGAGAAGCTGTTAATCAGGG 2907 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2697 ACTATTGGCCCCAGGCGGAGAATTTGCATTTGTTGCTTTCGGAGAAGCTGTTAATCAGGG 2756 Query 2908 TATAATGTCTCCTCAGTTATCTTCGTTGCTATTCCTTGTCGTGGGAATCTCAATGGCTAT 2967 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2757 TATAATGTCTCCTCAGTTATCTTCGTTGCTATTTCTTGTCGTGGGAATCTCAATGGCTAT 2816 Query 2968 CACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGT 3027 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2817 CACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGATTTGAGTTGCATGATGT 2876 Query 3028 TCGAAGTTTATTGCCCGTCGAGAGTGAGACAGATGATTTGCAGGGTCACATAATTATTTG 3087 ||||||||||||||| || ||||||||||| |||||||| |||| ||||||||||||||| Sbjct 2877 TCGAAGTTTATTGCCTGTTGAGAGTGAGACGGATGATTTACAGGATCACATAATTATTTG 2936 Query 3088 TGGATTTGGTCGAGTTGGTCAGATAATTGCTCAACTTCTCTCGGAAAGACTTATCCCATT 3147 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2937 CGGATTTGGTCGAGTTGGTCAGATAATTGCTCAGCTTCTCTCGGAAAGACTTATCCCATT 2996 Query 3148 TGTTGCCCTTGATGTCAGCAGTGATAGAGTGACTATCGGGCGTTCCTTGGATCTTCCTGT 3207 ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 2997 TGTTGCCCTCGATGTCAGCAGTGATAGAGTGACTATTGGGCGTTCTTTGGATCTTCCTGT 3056 Query 3208 TTATTTCGGAGACGCTGGTAGTAAAGAGGTTCTCCACAAAATTGGAGCTGGGAGAGCATG 3267 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 3057 TTATTTCGGAGACGCTGGTAGTAGAGAGGTTCTCCACAAAATTGGAGCTGAGAGAGCATG 3116 Query 3268 TGCTGCTGTGGTTGCCTTAGACGCACCAGGAGCAAACTACAGATGTGTTTGGGCTTTGAG 3327 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3117 TGCTGCTGTGGTTGCCTTAGACGCACCAGGAGCAAACTACAGATGTGTCTGGGCTTTGAG 3176 Query 3328 CAAGTTTTACCCCAATGTCAAAACTTTTGTCCGTGCTCACGATGTTGTTCATGGTCTTAA 3387 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3177 CAAGTATTACCCCAATGTCAAAACTTTTGTCCGTGCACACGATGTTGTTCATGGTCTTAA 3236 Query 3388 TCTAGAAAAAGCCGGTGCTACTGCAGTTGTCCCGGAGACTCTGGAGCCTAGTCTACAGTT 3447 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 3237 TCTAGAAAAAGCTGGTGCTACTGCGGTTGTCCCGGAGACTCTGGAGCCTAGTCTACAGTT 3296 Query 3448 GGCAGCTGCTGTTCTTGCTCAGGCAAAATTACCGACATCGGAAATTGCAAACACGATTAA 3507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3297 GGCAGCTGCTGTTCTTGCTCAGGCAAAATTACCGACATCGGAAATTGCAAACACGATTAA 3356 Query 3508 CGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAGCTATGTGAAGCAAGCGGAAGCTC 3567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3357 CGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAGCTATGTGAAGCAAGCGGAAGCTC 3416 Query 3568 TCTAGGCTATGGGTACTCTAGGACGAGTAAGCCTAAACCTCAACCATCGGATGCATCTGG 3627 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 3417 TCTAGGCTATGGGTACTCGAGGACGAGTAAGCCTAAACCTCAACCGTCGGATGCATCTGG 3476 Query 3628 CGATAACCAGATAATCGAAGGAGGCACAGTCGTAATCTGA 3667 |||||||||||||||||||||||||||||| | ||||||| Sbjct 3477 CGATAACCAGATAATCGAAGGAGGCACAGTAGCAATCTGA 3516 Score = 202 bits (109), Expect = 2e-50 Identities = 133/145 (92%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 86 ATGGAGTATGCGTCTACTTTTCAAAGGCCGATTCTATTCCATGGTGGAGATGGTGCGAGT 145 ||||| | |||||||||||||||| |||||| |||||| ||||||||||| ||||||||| Sbjct 1 ATGGATTTTGCGTCTACTTTTCAACGGCCGACTCTATTTCATGGTGGAGACGGTGCGAGT 60 Query 146 TACTGCTTTCCAAATCGATTGATAAGTCCTAAAGGAATCAGCATTACATCTGGGGATTCT 205 |||||||||||||||||||| |||||||| |||||||||| |||||| | |||||||||| Sbjct 61 TACTGCTTTCCAAATCGATTTATAAGTCCCAAAGGAATCAACATTACGTTTGGGGATTCT 120 Query 206 AAAGTGCATTCGTGTTTTCGATTGA 230 |||||||| |||||||||||||||| Sbjct 121 AAAGTGCACTCGTGTTTTCGATTGA 145 > Ahg490505 jgi|Araly1|490505|fgenesh2_kg.6__3639__AT4G00630.1 Length=2292 Score = 2278 bits (1233), Expect = 0.0 Identities = 1865/2171 (86%), Gaps = 40/2171 (2%) Strand=Plus/Plus Query 1503 CCAAGGCATCGTTTAATAAATCCTCCCGTTTCTTTT-CTGCATCTTTCTTCTCTTCTAAT 1561 ||||| |||| || || |||||||| ||||| |||| ||||||||||||||||||| ||| Sbjct 1 CCAAGACATCATTGAAGAAATCCTCTCGTTT-TTTTCCTGCATCTTTCTTCTCTTCCAAT 59 Query 1562 CCAGATGGGACCGCGACAGTGTTTG-GTAGTCTGGTTGGTTCTGTC-AAACAGCAATGGC 1619 |||| ||||||||||| |||| | ||| | |||| |||| | |||||||| |||| Sbjct 60 GGGGATGAAACCGCGACAGTTTTTGAG-AGTTTAGTTGAATCTG-CGAAACAGCAGTGGC 117 Query 1620 CCAAACTAGTTCTTGGGCTTGCTCTTCTTGGAGCA-GG--ACTGACATTATACTCCAATG 1676 | || ||| ||||||| |||| |||||||| ||| || | || || | || ||||||| Sbjct 118 CTAAGCTAATTCTTGGATTTGCACTTCTTGGGGCAGGGTTAGTGGCAATCTATTCCAATG 177 Query 1677 GAGTAGGGGGGAACAACCAGTTGCTTCAACAGCCAGATGTTACCAGCACTAGTACAGAAG 1736 ||||||| ||||||| ||| |||| ||||||||| || || |||||||| |||||| Sbjct 178 GAGTAGGAAGGAACAATCAGCTGCTACAACAGCCAAATATTGTCAGCACTACCGCAGAAG 237 Query 1737 ATGTCTCTTCAAGTACGAAGCCACTGATCCGGCAAGTGCAGAAACTTCCCAAGAGAATTA 1796 |||| || || || || || || ||||||||||| ||||| |||||||| |||||||| | Sbjct 238 ATGTTTCCTCCAGCACAAAACCTCTGATCCGGCAGGTGCAAAAACTTCCAAAGAGAATAA 297 Query 1797 AGAAACTACTTGAGATGATCCCTCACCAGGAGGTCAATGAGGAAGAAGCTTCCC-TCTTT 1855 ||||||||||||||||| ||||||| || ||||| ||||||||||||||||||| || | Sbjct 298 AGAAACTACTTGAGATGTTCCCTCAGCAAGAGGTTAATGAGGAAGAAGCTTCCCTTC-TC 356 Query 1856 GACT-TTTTGTGGTTACTGCTAGCAAGCGTCATATTTGTGCCTCTATTTCAGAAAATTCC 1914 || | | || ||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 357 GA-TGTGTTATGGTTACTGCTTGCAAGCGTCATATTCGTGCCTCTATTTCAGAAAATTCC 415 Query 1915 TGGAGG-CAGCCCTGTTCTTGGGTATTTGGCAGCTGGAATTC-TGATTGGTCCGTATGGT 1972 ||| || | ||||||||||||||||||||| || |||| || |||||||||| |||||| Sbjct 416 TGGCGGTAACCCCTGTTCTTGGGTATTTGGCGGCGGGAA-TCTTGATTGGTCCTTATGGT 474 Query 1973 CTTTCGATAATCCGTAATGTGCACGGAACCAGGGCCATCGCAGAATTTGGAGTAGTTTTC 2032 || || ||||| ||||||||||| ||||||| |||||| |||||||||||||| || ||| Sbjct 475 CTCTCAATAATTCGTAATGTGCATGGAACCAAGGCCATTGCAGAATTTGGAGTTGTCTTC 534 Query 2033 TTGCTTTTCAACATCGGCCTTGAGCTATCTGTTGAAAGACTGAGTTCCATGAAGAAATAT 2092 |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 535 TTGCTTTTCAACATTGGCCTTGAGCTCTCTGTTGAAAGACTTAGTTCCATGAAGAAATAT 594 Query 2093 GTTTTTGGATTAGGCTCAGCTCAGGTTCTGGTGACGGCAGCAGTAGTTGGATTGCTTGCC 2152 |||||||| |||||||| || ||||||||||| || ||||||||| |||| ||| | | Sbjct 595 GTTTTTGGGTTAGGCTCCGCGCAGGTTCTGGTAACAGCAGCAGTAATTGGTTTGATCACT 654 Query 2153 CATTATGTTGCTGGTCAGGCTGGTCCAGCAGCAATAGTGATTGGAAATGGCCTGGC-TCT 2211 || |||||||||||||||||||||||||| |||||||| ||||| ||||||||||| | | Sbjct 655 CACTATGTTGCTGGTCAGGCTGGTCCAGCGGCAATAGTAATTGGCAATGGCCTGGCAT-T 713 Query 2212 GTCGTCCACTGCTGTTGTCCTTCAGGTTCTACAAGAACGAGGCGAGAGTACATCTAGACA 2271 ||| |||||||||||||||||||||||| |||||||||| || ||||| || || ||||| Sbjct 714 GTCTTCCACTGCTGTTGTCCTTCAGGTTTTACAAGAACGGGGTGAGAGCACCTCAAGACA 773 Query 2272 TGGAAGGGCTTCATTTTCCGTCTTGCTTTTCCAGGATCTAGCTGTAGTTGTTTTACTGAT 2331 |||| | ||| ||||||| ||||||||||| |||||||| ||||| || || |||||||| Sbjct 774 TGGACGAGCTACATTTTCGGTCTTGCTTTTTCAGGATCTGGCTGTCGTCGTGTTACTGAT 833 Query 2332 TCTCATCCCACTTATTTCACCTAATTCATCGAAAGGAGGGATTGGATTTCAAGCCATTGC 2391 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 834 TCTCATCCCACTTATTTCACCTAATTCATCCAAAGGAGGGATTGGATTTCAAGCCATTGC 893 Query 2392 TGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTGGCTATTACTGCAATAATTGCTGG 2451 |||||||||||| ||||||||| ||||||||||||| ||||| ||||| ||||||||||| Sbjct 894 TGAAGCTCTTGGACTTGCTGCAATCAAAGCAGCAGTTGCTATCACTGCCATAATTGCTGG 953 Query 2452 TGGCCGTCTACTTCTTCGACCAATCTACAAGCAAATTGCAGAAAATCGAAACGCCGAGAT 2511 ||||||||| ||||| || || || |||||||||||||||||||| ||||| || ||||| Sbjct 954 TGGCCGTCTCCTTCTGCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGAT 1013 Query 2512 ATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACTAGTTTACTGACAGCTAGGGCTGG 2571 |||||| ||||| || ||||| ||||||||||||||||| ||||| ||||||||||| || Sbjct 1014 ATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGCTTACTTACAGCTAGGGCGGG 1073 Query 2572 ACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTCCTTGCAGAGACAGAATTTTC 2631 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1074 ACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTC 1133 Query 2632 GTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGTCTTCTGTTGGGACTCTTCTTCAT 2691 |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1134 CTTGCAAGTTGAATCAGATATTGCTCCATACCGTGGTCTTCTGTTGGGACTCTTCTTCAT 1193 Query 2692 GACGGTTGGAATGTCAATTGATCCGAAA-TTACTTCTCTCCAACTTCCCTGTCATAGTGG 2750 ||||||||| ||||| |||||||| ||| || |||||| ||||||||||||||||| ||| Sbjct 1194 GACGGTTGGCATGTCCATTGATCCAAAACTT-CTTCTCGCCAACTTCCCTGTCATAATGG 1252 Query 2751 GAACTTTGGGACTCTTGAT-AGTGGGCAAAACTATGTTAGTCGTGATTATGGGAAAATTG 2809 | || || |||||||| || ||| ||||| ||||| ||||| ||||| || || |||||| Sbjct 1253 GGACCTTAGGACTCTT-ATTAGTTGGCAAGACTATATTAGTGGTGATCATAGGCAAATTG 1311 Query 2810 TTCGGCATATCAATAATATCTGCAATTCGGGTCGGTCTACTAT-TGGCCCCAGGCGGAGA 2868 || ||||| ||||| |||||||| | | |||||||| || | |||| || || ||||| Sbjct 1312 TTTGGCATTTCAATCATATCTGCCGTGAGAGTCGGTCTTCT-TCTGGCTCCTGGTGGAGA 1370 Query 2869 GTTTGCATTTGTTGCTTTCGGAGAAGCTGTTAATCAGGGTATAATGTCTCCTCAGTTATC 2928 |||||| ||||||||||| ||||||||||| || |||||||||||| || | ||| |||| Sbjct 1371 GTTTGCGTTTGTTGCTTTTGGAGAAGCTGTCAACCAGGGTATAATGACTTCGCAGCTATC 1430 Query 2929 TTCGTTGCTATTCCTTGTCGTGGGAATCTCAATGGCTATCACACCCTGGTTAGCTGCTGG 2988 ||||||||| || || ||||||||||| ||||||||| | || || ||||||||||| || Sbjct 1431 TTCGTTGCTGTTTCTCGTCGTGGGAATATCAATGGCTCTTACTCCTTGGTTAGCTGCCGG 1490 Query 2989 TGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGA 3048 ||||| |||||||| ||||| |||||||| || ||||||||||||||||| || || || Sbjct 1491 CGGCCAATTAATTGCGTCTCGATTTGAGTTACAAGATGTTCGAAGTTTATTACCAGTTGA 1550 Query 3049 GAGTGAGACAGATGATTTGCAGGGTCACATAATTATTTGTGGATTTGGTCGAGTTGGTCA 3108 || ||||| |||||||| ||||||||||| |||||||| |||||||| ||| ||||||| Sbjct 1551 AAGCGAGACGGATGATTTACAGGGTCACATCATTATTTGCGGATTTGGACGAATTGGTCA 1610 Query 3109 GATAATTGCTCAACTTCTCTCGGAAAGACTTATCCCATTTGTTGCCCTTGATGTCAGCAG 3168 |||||| ||||| ||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct 1611 GATAATCGCTCAGCTTCTTTCCGAAAGACTTATCCCATTTGTTGCCCTCGATGTCAGCAG 1670 Query 3169 TGATAGAGT-GACTATCGGGCGTTCCTTGGATCTTCCTGTTTATTTCGGAGACGCTGGTA 3227 ||||||||| | | || || |||||| | |||||||| |||||||| ||||||||||||| Sbjct 1671 TGATAGAGTAG-CAATTGGTCGTTCCCTAGATCTTCCAGTTTATTTTGGAGACGCTGGTA 1729 Query 3228 GTAAAGAGGTTCTCCACAAAATTGGAGCTGGGAGAGCATGTGCTGCTG-TGGTTGCCTTA 3286 ||| |||||| |||||||||||||| || | |||||||||||||| | | |||| ||| Sbjct 1730 GTAGAGAGGTACTCCACAAAATTGGGGCAGATAGAGCATGTGCTGCGGCTA-TTGCTTTA 1788 Query 3287 GACGCACCAGGAGCAAACTACAGATGTGTTTGGGCTTTGAGCAAGT-TTTACCCCAATGT 3345 ||| |||| |||||||| ||||| ||||| |||||| | ||||| | ||| ||| ||||| Sbjct 1789 GACACACCTGGAGCAAATTACAGGTGTGTCTGGGCTCTCAGCAAATATTTTCCC-AATGT 1847 Query 3346 CAAAACTTTTGTCCGTGCTCACGATGTTGTTCATGGTCTTAATCTAGAAAAAGCCGGTGC 3405 |||||| ||||||||||| || || |||| |||||| || ||||| |||||||||||||| Sbjct 1848 CAAAACCTTTGTCCGTGCACATGACGTTGATCATGGCCTCAATCTCGAAAAAGCCGGTGC 1907 Query 3406 TACTGCAGTTGTCCCGGAGACTCTGGAGCCTAGTCTACAGTTGGCAGCTGCTGTTCTTGC 3465 ||| || ||||| || ||||| ||||| || ||||||||||||||||||||||||||||| Sbjct 1908 TACCGCTGTTGTTCCTGAGACGCTGGAACCAAGTCTACAGTTGGCAGCTGCTGTTCTTGC 1967 Query 3466 TCAGGCAAAATTACCGACATCGGAAATTGCAAACA-CGATTAACGAGTTCAGAACCCGTC 3524 ||||| ||||||||||| || |||||||||| || |||| ||||| |||||| | |||| Sbjct 1968 ACAGGCCAAATTACCGACGTCAGAAATTGCAA-CAACGATCAACGAATTCAGATCTCGTC 2026 Query 3525 ACTTGTCTGAACT-GACCGAGCTATGTGAAGCAAGCGGAAGCTCTCTAGGCTATGGGTAC 3583 ||||||||||| | | ||||||||||||| ||||| |||||||||||||| || |||| | Sbjct 2027 ACTTGTCTGAATTAG-CCGAGCTATGTGAGGCAAGTGGAAGCTCTCTAGGTTACGGGTTC 2085 Query 3584 TCTAG--G-ACGAGTAAGCCTAAACCTC-A--ACCATCGGATGCATCTGGCGATAACCAG 3637 || || | ||||| || || ||||| | | |||||| ||| | |||| |||||||||| Sbjct 2086 TCAAGAAGTACGAGCAAACCAAAACCACCATCACCATCTGATACGTCTGACGATAACCAG 2145 Query 3638 ATAATCGAAGG 3648 || || ||||| Sbjct 2146 ATTATTGAAGG 2156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 147092519645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5