BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01830.2 Length=2139 Score E Sequences producing significant alignments: (Bits) Value Ahg470092 jgi|Araly1|470092|fgenesh2_kg.1__46__AT1G01830.3 2911 0.0 > Ahg470092 jgi|Araly1|470092|fgenesh2_kg.1__46__AT1G01830.3 Length=2305 Score = 2911 bits (1576), Expect = 0.0 Identities = 1955/2128 (92%), Gaps = 66/2128 (3%) Strand=Plus/Plus Query 19 AGTGAGGAACATAAAGAACTGGGGA-ACATTTTGGATATTTTTTCTCCAAGTGAAGTTAA 77 ||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||||||| | Sbjct 228 AGTGAGGAACATAGAGAACTGGGGAGA-ATTTTGGATCTTTTTTCTTCAAGTGAAGTT-A 285 Query 78 AAGGAACAAGGAGACAAGGT-TGGAGTCGACCAATCATTGATCG-AGCT-AGAGAA-ATC 133 ||| ||||||| |||||||| || | | | || || || | || | ||| || Sbjct 286 AAGTAACAAGGGGACAAGGTAAGGTTTTGGCTTTTC-TTTAT-GTTTCTCACTGAACAT- 342 Query 134 TGGCTACAATTC-AA-TTTCAGA-TGAGGTTTTCAAAAACACAGAAG-ATGAATGTTCAA 189 | | | || || || ||| || | | |||| || || || || ||||||||| Sbjct 343 T--CAAGAACTCAAAGTTT-TGATTTTTCTCTTCATCTTCAAAG-AGAATAAATGTTCAA 398 Query 190 ATAGCATAAGAAGCTGTGAATTTTCTTCTTTCTTTTTTGTCCAATGGGAACAATGGCAGA 249 ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 399 ATAGCGTAAGAAGCTGTGAATTTTCTTTTTTC-TTTTTGTCCAATGGGAACAATGGCAGA 457 Query 250 ATTGGGAACCATGGGAAAATTTGGAGCCATGGCAGAAGAGCAGCAAGTTAACCAGATGAT 309 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 458 ATTGGGAACCATGGGAAAGTTTGGAGCCATGGCAGAAGAGCAGCAAGTTAACCAGATGAT 517 Query 310 CATGGATAAACAATCAGTAGAAGAATGGCTATCGCGCGTCAACTCGCTAATACCATCCGT 369 ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| Sbjct 518 CATGGATAAACAATCAGCAGAAGAATGGCTATCGCGCGTCCATTCGCTAATACCATCCGT 577 Query 370 CCTCAGCAAGGCAAAAACGGTTAAGAAGTTTACAGGAAGATGGAAGACGATCATCTCGAA 429 |||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| || Sbjct 578 CCTCAGCAAGGCAAAAACAGTTAAGAATTTTACAGGACGATGGAAGACGATAATCTCAAA 637 Query 430 GATCGAACAGATACCAGCTTGTTTATCTGACCTCTCAAGCCACCCTTGCTTCTCCAAGAA 489 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 638 GATCGAACAGATACCAGCTTGTTTATCTGACCTCTCAAGCCACCCTTGTTTCTCCAAGAA 697 Query 490 CAAGCTCTGCAACGAGCAGTTGCAATCTGTGGCTAAGACGCTTAGTGAAGTGATAGAGCT 549 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 698 CAAGCTCTGCAACGAGCAGTTGCAATCTGTGGCTAAGACTCTTGGTGAAGTGATAGAGCT 757 Query 550 TGCAGAGCAGTGTTCAACTGACAAGTATGAAGGGAAGCTGCGTATGCAGAGCGATCTAGA 609 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 758 TGCAGAGTTGTGTTCAACTGACAAGTATGAAGGGAAGCTGCGTATGCAGAGCAATCTCGA 817 Query 610 TTCTTTATCCGGAAAACTGGATTTGAATCTAAGAGACTGTGGGGTTTTGATCAAGACCGG 669 | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 818 TGCTTTATCCGGAAAACTGGATTTGAATCTAAGAGACTGTATGGTTTTGATCAAGACCGG 877 Query 670 CGTTCTCGGTGAAGCTACGTTACCTCTTTACATTTCAAGTTCATCGGAAACACCCAAAAT 729 |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 878 CGTTCTTGGTGAAGCTACATTACCTCTTTACATTTCAAGTTCATCAGAAACACCCAAAAT 937 Query 730 TTCCAGTTTAAAAGAACTTCTAGCGAGGCTACAGATCGGTCACTTGGAATCAAAACACAA 789 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 938 TTCCAGTTTAAAAGAACTTCTAGCAAGGCTACAGATTGGTCACTTGGAATCAAAACACAA 997 Query 790 TGCTCTCGAAAGCCTCCTTGGTGCAATGCAAGAAGATGAAAAGATGGTTCTTATGCCTTT 849 ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| Sbjct 998 TGCTCTCGAAAGCCTCCTTGGTGCAATGCAAGAGGATGAGAAGATGG---TTATGCCTTT 1054 Query 850 GATCGGACGAGCCAACGTTGCAGCTTTAGTTCAGCTGCTAACAGCAACTTCGACAAGAAT 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1055 GATCGGACGAGCCAACGTTGCAGCTTTAGTTCAGCTGCTAACAGCAACTTCGACAAGAAT 1114 Query 910 CAGAGAGAAAGCGGTGAATCTGATCAGTGTATTAGCAGAATCAGGACACTGCGACGAATG 969 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1115 CAGAGAGAAAGCGGTGAATCTGATCAGTGTATTAGCGGAATCAGGACACTGCGACGAATG 1174 Query 970 GCTTATCTCCGAAGGTGTATTGCCTCCGTTAGTGAGACTAATCGAATCAGGGAGTCTTGA 1029 |||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| Sbjct 1175 GCTTATCTCCGAAGGTGTATTGCCTCCGCTAGTGAGGCTAATCGAATCAGGAAGTCTTGA 1234 Query 1030 AACCAAAGAAAAAGCTGCGATTGCGATCCAGAGACTGTCCATGACAGAGGAAAACGCACG 1089 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1235 AACCAAAGAAAAAGCTGCAATTGCGATCCAGAGACTGTCCATGACAGAGGACAACGCACG 1294 Query 1090 GGAAATCGCAGGACACGGCGGAATCACACCGCTTATAGATCTCTGTAAAACAGGGGATTC 1149 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1295 GGAAATCGCAGGACACGGCGGAATCACACCACTTATCGATCTCTGTAAAACAGGGGATTC 1354 Query 1150 TGTGTCACAAGCTGCGTCTGCAGCTGCTCTGAAGAACATGTCAGCAGTTTCAGAGCTGAG 1209 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1355 TGTGTCACAAGCTGCGTCTGCAGCTGCTCTGAAGAACATGTCAGCAGTTTCAGAGCTCAG 1414 Query 1210 ACAATTGCTTGCGGAAGAAGGAATAATTAGAGTCTCGATCGATCTTCTAAACCATGGGAT 1269 |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| Sbjct 1415 ACAATTGCTTGCGGAAGAAGGAATGGTTAGAGTCTCTATCGATCTCCTAAACCATGGGAT 1474 Query 1270 ATTGTTAGGATCAAGAGAACACATGGCCGAGTGTTTGCAGAATCTCACTGCAGCGAGCGA 1329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1475 ATTGTTAGGATCAAGAGAACACATGGCCGAGTGTTTGCAGAATCTCACTGCAGCGAGCGA 1534 Query 1330 CGCTCTACGTGAAGCCATTGTCTCAGAAGGCGGAGTTCCGAGTCTCTTGGCTTATCTCGA 1389 ||||| || ||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 1535 GGCTCTGCGCGAAGCCATTGTTTCGGAAGGAGGAGTTCCGAGTCTCTTGGCTTATCTCGA 1594 Query 1390 CGGTCCGTTGCCGCAACAACCGGCGGTAACGGCACTGAGAAATCTAATCCCGTCGGTGAA 1449 |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1595 CGGTCCATTGCCGCAAGAACCGGCCGTAACGGCACTGAGAAATCTAATCCCGTCGGTGAA 1654 Query 1450 TCCAGAGATATGGGTGGCTCTCAATTTGCTTCCACGATTGAGGCATGTACTCAAGTCAGG 1509 ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| Sbjct 1655 TCCAGAGATATGGGTGGCTCTCAATTTGCTTCCACGACTGACACATGTGCTCAAGTCAGG 1714 Query 1510 ATCTTTAGGCGCGCAACAAGCAGCAGCATCGGCTATTTGCCGTTTCGCTTGCTCGCCGGA 1569 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 1715 ATCTTTAGGCGCGCAACAAGCAGCAGCATCGGCGATTTGCCGTTTCACTTGCTCGCCGGA 1774 Query 1570 GACGAAA-AGGCTAGTGGGAGAATCCGGTTGCATCCCGGAGATCGTGAAACTTCTGGAAT 1628 ||| ||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||||| Sbjct 1775 GAC-AAAGAGGCTAGTGGGCGAATCCGGGTGCATTCCGGAGATGGTGAAACTTCTGGAAT 1833 Query 1629 CGAAGTCAAACGGATGTCGAGAAGCGGCGGCTCAGGCGATCGCTGGATTGGT-AGCGGAA 1687 ||||||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||| Sbjct 1834 CGAAGTCAAACGGATGTAGAGAAGCGGCGGCTCAGGCGATCGCCGGATTGGTGA-CGGAA 1892 Query 1688 GGAAGGATTCGACGGGAACTGAAGAAAGACGGGAAGAGCGTTCTGACGAATTTGGTGATG 1747 ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1893 GGAAGGATTAGACGGGAACTGAAGAAAGACGGGAAGAGCGT---GACGAATCTGGTGATG 1949 Query 1748 TTATTGGATTCAAACCCTGGAAACACGGCGAAGAAGTACGCCGTGGCGGGGCTGTTGGGG 1807 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1950 TTATTGGATTCGAACCCTGGAAACACGGCGAAGAAGTACGCAGTGGCGGGGCTGTTGGGG 2009 Query 1808 ATGTCGGGAAGCGAGAAGAGTAAGAAAATGATGGTGTCGTACGGAGCAATAGGGTATCTG 1867 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2010 TTGTCGGGAAGCGAGAAGAGTAAGAAAATGATGGTGTCGTACGGAGCGATAGGGTATCTG 2069 Query 1868 AAGAAGCTGTCGGAGATGGAAGTAATGGGCGCCGATAAGCTTCTCGAGAAGCTTGAAAGA 1927 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2070 AAGAAGCTGTCGGAGATGGAAGTAATCGGCGCCGATAAGCTTCTCGAGAAGCTTGAAAGA 2129 Query 1928 GGAAAGCTAAGAAGCTTCTTTCACCGGTAAAACGAACGATGCGGAGACATTGAAGCAGCC 1987 |||||||| ||||||||||||||||||||||| || ||| | | | | | | Sbjct 2130 GGAAAGCTGAGAAGCTTCTTTCACCGGTAAAA--AA-GAT----A-A-A---A-G--GT- 2173 Query 1988 AAGATAAAAAGTGTAATATTGTCTGATGTAAGTTTATTAACCGTTAGTTAAACTTTACTA 2047 | ||| | | | | |||||||||||||| ||||||||||||||||||||||||| Sbjct 2174 --G-TAA----T--A-T-T-GTCTGATGTAAGTTAATTAACCGTTAGTTAAACTTTACTA 2221 Query 2048 GTAATTAAAAAG-T-GTTC-TTTGGGCTGTTTCTCTGAAGCTGATAAATATGGGCTTTAT 2104 | | |||||| | | || |||||||||||||||||||||||||||||||||||||||| Sbjct 2222 -T--T-AAAAAGGTCGGTCCTTTGGGCTGTTTCTCTGAAGCTGATAAATATGGGCTTTAT 2277 Query 2105 ATTAAA--CAGGCCCATGAAGTTGAATA 2130 |||||| |||||||||||| ||||||| Sbjct 2278 ATTAAATACAGGCCCATGAATTTGAATA 2305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80484687685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5