BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01880.1 Length=1996 Score E Sequences producing significant alignments: (Bits) Value Ahg311256 jgi|Araly1|311256|fgenesh1_pm.C_scaffold_1000036 1459 0.0 > Ahg311256 jgi|Araly1|311256|fgenesh1_pm.C_scaffold_1000036 Length=1773 Score = 1459 bits (790), Expect = 0.0 Identities = 889/938 (95%), Gaps = 2/938 (0%) Strand=Plus/Plus Query 119 ATGGGTGTGGGAGGCAATTTCTGGGATTTGCTGAGACCATATGCTCAGCAACAAGGCTTT 178 ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||| Sbjct 1 ATGGGTGTGGGAGGCAATTTCTGGGATTTGCTGAGGCCTTATGCTCAACAACAAGGGTTT 60 Query 179 GATTTTCTCAGAAACAAACGAGTCGCTGTTGATCTCTCCTTCTGGATCGTTCAGCATGAA 238 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATTATCTCAGAAACAAACGCGTCGCTGTTGATCTCTCCTTCTGGATCGTTCAGCATGAA 120 Query 239 ACCGCTGTTAAGGGTTTCGTCCTTAAACCTCACCTCCGACTCACTTTCTTCCGTACTATC 298 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 ACCGCTGTTAAGGGTTTTGTCCTTAAACCTCACCTCAGACTCACTTTCTTCCGTACTATC 180 Query 299 AACCTCTTCTCAAAGTTTGGAGCGTACCCGGTTTTTGTGGTTGATGGAACACCATCACCT 358 |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| Sbjct 181 AACCTCTTCTCAAAGTTTGGAGCGTATCCAGTTTTTGTGGTTGATGGAACACCTTCACCT 240 Query 359 TTGAAATCTCAGGCGAGAATCTCCAGGTTTTTCCGTTCTTCTGGAATTGATACTTGTAAT 418 | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 CTAAAATCTCAGGCGAGAATCTCCAGGTTTTTCCGGTCTTCTGGAATTGATACTTGTAAT 300 Query 419 CTACCTGTGATTAAAGATGGTGTCTCGGTTGAGAGAAACAAGCTGTTTTCTGAATGGGTT 478 || ||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||| Sbjct 301 CTGCCTGTGATTAAAGATGGCGTCTCCGTTGAGAGAAATAAGCTGTTTTGTGAATGGGTT 360 Query 479 AGGGAATGTGTGGAGCTACTCGAATTGCTCGGTATTCCGGTGCTGAAAGCTAATGGTGAG 538 | |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 361 AAGGAATGTGTGGAGCTACTCGAATTGCTCAGTATTCCGGTGCTGAAAGCAAATGGTGAG 420 Query 539 GCTGAAGCTCTCTGTGCACAGTTAAACAGCCAAGGTTTTGTGGATGCTTGCATTACTCCT 598 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 421 GCTGAAGCTCTCTGTGCACAGTTAAACAGCGAAGGTTATGTGGATGCTTGCATTACTCCT 480 Query 599 GATAGTGATGCTTTCCTTTTTGGTGCTATGTGCGTGATCAAAGACATCAAGCCTAATTCA 658 ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| Sbjct 481 GATAGTGATGCTTTCCTATTTGGTGCTAAGTGCGTGATCAAAGATATCAAGCCTAATTCA 540 Query 659 AGAGAACCTTTTGAATGCTACCATATGTCACATATCGAGTCTGGCCTCGGTTTGAAGCGG 718 ||||| |||||||||||||||||||||||| |||| ||||||||||| ||| |||||||| Sbjct 541 AGAGAGCCTTTTGAATGCTACCATATGTCAGATATTGAGTCTGGCCTTGGTCTGAAGCGG 600 Query 719 AAACACTTGATTGCTATTTCTCTATTGGTGGGAAACGATTATGATTCAGGCGGTGTTCTT 778 ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct 601 AAACACTTGATAGCTATTTCTCTATTGGTTGGAAATGACTATGATTCAGGCGGTGTTCTT 660 Query 779 GGGATTGGTGTGGATAAAGCACTGCGCATTGTTCGTGAGTTTTCTGAAGACCAAG-TACT 837 ||||||||||||||||||||||| |||||||||||||||||||||||||| | || |||| Sbjct 661 GGGATTGGTGTGGATAAAGCACTCCGCATTGTTCGTGAGTTTTCTGAAGA-CGAGATACT 719 Query 838 TGAAAGACTACAGGACATTGGAAATGGGTTGCAACCTGCAGTTCCTGGTGGAATCAAATC 897 |||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| Sbjct 720 TGAAAGACTACAGGACATTGGAAAAGGGTTGAAACCTACAGTTCCTGGTGGAATCAAATC 779 Query 898 CGGGGATGATGGTGAAGAATTCCGCTCAGAGATGaaaaaaaGATCTCCTCACTGTTCCCG 957 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TGTGGATGATGGTGAAGAATTCCGCTCAGAGATGAAAAAAAGATCTCCTCACTGTTCCCG 839 Query 958 TTGTGGACACCTGGGCAGCAAGAGAACTCATTTTAAGTCCTCTTGTGAGCACTGCGGTTG 1017 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 840 TTGTGGACACCTGGGCAGCAAGAGAACTCATTTTAAGTCCTCTTGTGAGCATTGTGGTTG 899 Query 1018 TGATAGTGGTTGCATTAAAAAACCATTAGGGTTTAGAT 1055 |||||||||||| ||||| ||||||||||||||||||| Sbjct 900 TGATAGTGGTTGTATTAAGAAACCATTAGGGTTTAGAT 937 Score = 1280 bits (693), Expect = 0.0 Identities = 799/847 (94%), Gaps = 19/847 (2%) Strand=Plus/Plus Query 1084 AGATTTAAGGGAACAAAAGAAAACCAATGATTGGTGGATCAAAGTCTGCGATAAGATTGC 1143 |||||||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 934 AGATTTAAAGGAACAGAAGAAAACC-ATGATTGGTGGATCAAAGTCTGTGATAAGATTGC 992 Query 1144 TCTAGCGCCAGAGTTTCCCAACAGAAAGATTATTGAACTTTATCTATCCGATGGTTTGAT 1203 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 993 TCTAGCGCCAGAATTTCCCAACAGAAAGATTATTGAACTCTATCTATCCGATGGTTTGAC 1052 Query 1204 GACAGGAGATGGATCGTCAATGTCTTGGGGAACTCCTGATACTGGAATGCTAGTGGATCT 1263 | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 GGCAGAAGATGGCTCGTCAATGTCTTGGGGAACTCCTGATACTGGAATGCTAGTGGATCT 1112 Query 1264 CATGGTTTTCAAACTGCACTGGGACCCATCTTATGTTAGAAAAATGTTGCTTCCGATGCT 1323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1113 CATGGTTTTCAAACTGCACTGGGACCCATCTTATGTTAGAAAAATGTTGCTTCCGATGTT 1172 Query 1324 GTCGACCATTTATCTGAGAGAAAAGGCAAGAAACAACACAGGATACGCTTTGTTGTGTGA 1383 ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||| Sbjct 1173 GTCGACCATTTATCTAAGAGAAAAGGCAAGAAACAGCACAGGAAACGCTTTGTTATGTGA 1232 Query 1384 TCAATACGAATTTCATTCAATCAAGTGCATAAAAACTAGATATGGGCATCAGTCCTTTGT 1443 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1233 TCAATACGAATTTCATTCAATCAAGTGCATAAAAACTAGATATGGGCATCAGTCTTTTGT 1292 Query 1444 AATAAGGTGGAGAAAACCCAAATCTACAAGTGGTTATAGTCATAGTCACAGCGAGCCAGA 1503 ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||| Sbjct 1293 GATAAGGTGGAGAAAACCCATATCTATAAGTGGTTATAGTCACAGTCAAAGCGAGCCAGA 1352 Query 1504 AGAATCAATTGTTGTATTGGAAGAAGAA--G----AAGA-G-----TCTGTTGATCCGTT 1551 |||||||||||||||||||||||||||| | |||| | |||||||||||||| Sbjct 1353 AGAATCAATTGTTGTATTGGAAGAAGAACTGGTGGAAGAAGAAGAGTCTGTTGATCCGTT 1412 Query 1552 GGATGGTTTAAATGAACCTCAGGTGCAAAATGATAATGGTGACTGCTTCTTGCTAACTGA 1611 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1413 AGATGGTTTAAATGAACCTCAGGTGCAAAATGATAATGGTGACTGCTTCTTGCTAACTGA 1472 Query 1612 TGAATGCATAGGACTTGTTCAGTCTGCTTTCCCTGATGAAACAGAGCATTTTCTACATGA 1671 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1473 TGAATGCATAGGACTTGTTGAGTCTGCTTTCCCTGATGAAACAGAGCATTTTCTACATGA 1532 Query 1672 GAAGAAACTGAGAGAGTCGAAAAAGAAGAATGTTTCTGAAGAAGAAACAGCAACACCAAG 1731 ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1533 GAAGAAACTGAGAGAGTCGAAAAAGAAGAATGTTTCTGAAGAA-A--CAGCAACACCAAG 1589 Query 1732 AGCAACAACAATGGGTGTACAAAGAAGCATTACCGATTTCTACCGTTCAGCGAAGAAAGC 1791 | |||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1590 ACCAACAACAATGGGTGTACAAAGAAGCATTACCGATTTCTACCGTTCAGCGAA-A--GC 1646 Query 1792 AGCAGCAGGTCAAAGTATAGAGACAGGCGGGAGTTCAAAAGCTTCTGCGGAAAAGAAGAG 1851 |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1647 AGCACCAGGTCAAAGTATAGAGACTGGCGGGAGTTCAAGAGCTTCTGCGGAAAAGAAGAG 1706 Query 1852 ACAGGCAACTTCTACTAGTAGTAGTAACCTTACAAAGTCGGTCAGGCGTCGTCTCTTGTT 1911 ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| Sbjct 1707 ACAGGCAACTTCTACTAGTAGTAGTAACCTTTCAAAGTCTGTAAGGCGTCGTCTCTTGTT 1766 Query 1912 TGGATAG 1918 ||||||| Sbjct 1767 TGGATAG 1773 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75037782650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5