BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01900.1
Length=2460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909785 jgi|Araly1|909785|Al_scaffold_0001_39 3602 0.0
> Ahg909785 jgi|Araly1|909785|Al_scaffold_0001_39
Length=2325
Score = 3602 bits (1950), Expect = 0.0
Identities = 2204/2329 (95%), Gaps = 8/2329 (0%)
Strand=Plus/Plus
Query 17 ATGCATCGCTTTCTTTTAATGCTCTTATTTCCCTTTAGCGACAACCGTCCCATGATGTTC 76
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGCATCGCTTTCTTTTAATGCTCTTATATCCCTTTAGCGACAACCGTCCCATGATGTTC 60
Query 77 TTCAGATCATTCATCGTTTTCTTCTTTCTTATCTTTTTCGCATCAAATGTTTCTTCCCGT 136
|||||||||||| |||||||||||||||| ||||| | | |||||||||||| ||| |
Sbjct 61 TTCAGATCATTCGTCGTTTTCTTCTTTCTCATCTTCTCCATATCAAATGTTTCGCCCCAT 120
Query 137 AAACAAACCTACGTGATCCACACTGTCACAACCAGTACCAAACACATCGTAACTTCACTT 196
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 AAACAAACCTACGTGATCCACACTGTCACTACCAGTACCAAACACATCGTAACTTCACTT 180
Query 197 TTTAATTCACTCCAAACAGAGAATATCAACGACGATGATTTTTCTCTCCCGGAGATTCAC 256
||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct 181 TTTAATTCACTCCGAACAGAGAATATTTACGACGATGGGTTTTCTCTCCCGGAGATCCAC 240
Query 257 TATATTTACGAGAATGCCATGTCTGGTTTCTCCGCGACTCTCACCGACGACCAGCTTGAT 316
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TATATTTACGAAAATGCCATGTCCGGTTTCTCCGCGACTCTCACCGACGACCAGCTTGAG 300
Query 317 ACGGTGAAGAACACAAAAGGGTTTATCTCTGCTTATCCAGACGAGCTCTTATCTCTACAC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGGTGAAGAACACAAAAGGGTTTATCTCTGCTTATCCAGACGAGCTCTTATCTCTACAC 360
Query 377 ACGACATATTCTCACGAGTTTCTTGGTCTCGAATTCGGGATCGGTCTTTGGAACGAGACG 436
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 361 ACGACATATTCTCACGAGTTTCTTGGTCTCGAATACGGGATCGGACTTTGGAACGAGACG 420
Query 437 AGCCTATCTTCGGACGTCATCATCGGCCTTGTGGACACTGGGATCTCCCCGGAGCACGTG 496
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 421 AGCCTATCTTCGGACGTCATCATCGGCCTTGTGGACACAGGGATCTCTCCGGAGCACGTG 480
Query 497 AGCTTCCGAGACACGCACATGACTCCTGTACCGTCTAGATGGAGAGGTTCGTGCGATGAA 556
|||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 481 AGCTTCCGAGACACTCACATGACCCCGGTCCCGTCTAGATGGAGAGGTTCGTGCGATGAA 540
Query 557 GGCACAAACTTCTCATCTTCGGAGTGTAACAAGAAGATCATTGGAGCTAGCGCATTTTAC 616
|||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 541 GGCACAAACTTCTCGTCTTCGTCGTGTAACAAGAAGATCATTGGAGCTAGCGCGTTTTAC 600
Query 617 AAAGGCTACGAATCAATCGTTGGAAAAATCAATGAAACCACTGATTTCAGGTCGACTCGA 676
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 AAAGGCTACGAATCCATCGTTGGAAAAATCAATGAAACCACTGATTTCAGGTCGGCTCGA 660
Query 677 GACGCACAAGGACATGGGACGCATACAGCCTCGACTGCTGCCGGAGACATTGTCCCCAAA 736
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 661 GACGCACAAGGACACGGGACGCATACAGCCTCGACTGCTGCCGGAGGCATTGTCCCGAAA 720
Query 737 GCGAATTATTTCGGGCAAGCTAAAGGTTTAGCTTCAGGGATGAGGTTTACTTCGAGGATC 796
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 GCGAATTATTTCGGGCAAGCTAAAGGTTTGGCTTCAGGGATGAGGTTTACTTCGAGGATC 780
Query 797 GCTGCTTACAAAGCTTGTTGGGCTCTAGGATGTGCCAGCACCGACGTCATAGCAGCCATT 856
||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 781 GCTGCTTACAAAGCTTGTTGGACTCTAGGATGTGCCAACACTGACGTCATAGCAGCCATT 840
Query 857 GACCGAGCCATTTTAGACGGTGTAGATGTGATTTCACTCTCGCTAGGTGGATCATCACGC 916
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 841 GACCGAGCCATTTTAGACGGTGTGGATGTGATCTCTCTCTCGCTAGGTGGATCATCACGC 900
Query 917 CCGTTTTACGTGGATCCTATCGCGATAGCCGGGTTCGGAGCGATGCAGAAGAACATTTTC 976
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 901 CCGTTTTACGTGGATCCCGTCGCGATCGCCGGGTTCGGAGCGATGCAGAAGAACATATTC 960
Query 977 GTGTCTTGCTCTGCGGGTAATTCAGGACCAACTGCATCCACAGTGAGTAATGGAGCTCCG 1036
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 GTGTCTTGCTCTGCGGGTAATTCAGGTCCAACTGCATCCACAGTGAGTAATGGAGCTCCG 1020
Query 1037 TGGTTGATGACTGTCGCTGCCAGTTATACGGATAGGACGTTTCCGGCGATTGTCCGGATC 1096
|||||||||||||| |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct 1021 TGGTTGATGACTGTTGCTGCCAGCTATACGGACAGGACGTTTCCGGCCATAGTCCGGATC 1080
Query 1097 GGGAACCGTAAAAGCTTGGTCGGATCATCCTTGTATAAAGGAAAAAGCTTAAAGAATCTG 1156
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GGGAACCGTAAAAGCTTGGTCGGATCATCCTTGTATAAAGGGAAAAGCTTAAAGAATCTG 1140
Query 1157 CCTTTGGCGTTTAACAGAACAGCTGGAGAAGAAAGCGGAGCCGTGTTCTGTATCCGGGAC 1216
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1141 GCTTTAGCGTTTAACAGAACAGCTGGAGAAGGAAGCGGAGCCGTGTTCTGTATCCGGGAC 1200
Query 1217 TCGCTCAAGAGAGAACTCGTCGAGGGTAAAATCGTCATTTGCTTAAGAGGAGCCAGCGGC 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCGCTCAAGAGAGAACTCGTCGAGGGTAAAATCGTCATTTGCTTAAGAGGAGCCAGCGGC 1260
Query 1277 AGAACGGCCAAAGGAGAAGAGGTGAAACGGAGCGGAGGAGCAGCGATGCTTCTTGTGAGC 1336
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1261 AGAACCGCGAAAGGAGAAGAGGTGAAACGGAGCGGAGGAGCTGCGATGCTTCTTGTGAGC 1320
Query 1337 ACAGAGGCGGAAGGAGAGGAGCTTCTTGCTGATCCTCACGTTTTACCGGCCGTTTCACTT 1396
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1321 ACAGAGGCAGAAGGAGAGGAGCTTCTTGCTGATCCTCACGTTTTACCGGCGGTTTCAATT 1380
Query 1397 GGATTTTCCGACGGTAAAACCTTACTGAATTACCTCGCCGGAGCAGCAAACGCCACCGCC 1456
|| ||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||
Sbjct 1381 GGCTTTTCCGACGGTAAAACCTTACTGACTTATCTCGCCGGCGCAGCCAACGCCACCGCC 1440
Query 1457 TCCGTTCGATTCAGAGGAACCGCGTATGGTGCAACCGCCCCGATGGTAGCCGCGTTCTCA 1516
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 GCCGTTAGATTCAGAGGAACCGCGTACGGTGCAACCGCCCCGATGGTAGCCGCGTTCTCA 1500
Query 1517 TCCAGAGGACCTAGCGTCGCGGGACCGGAAATAGCTAAACCGGACATTGCGGCTCCCGGT 1576
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1501 TCCAGAGGACCTAGCGTCGCGGGACCTGAAGTTGCTAAACCGGACATTGCGGCTCCCGGT 1560
Query 1577 CTGAACATCCTCGCCGGATGGTCACCGTTCA-GCAGCCCTAGCCTCCTCAGATCCGATCC 1635
|||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 1561 ATGAACATCCTCGCCGGATGGTCGCCGTTCTCG-AGCCCTAGCCTCCTCAGATCCGATCC 1619
Query 1636 AAGACGCGTCCAATTCAATATCATCTCGGGAACCTCCATGGCTTGTCCTCACATCAGCGG 1695
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1620 AAGACGCGTCCAATTCAATATCATCTCGGGAACCTCCATGGCTTGTCCTCACATTAGCGG 1679
Query 1696 AATCGCCGCTCTAATCAAGTCCGTTCACGGGGACTGGTCACCGGCGATGATCAAATCAGC 1755
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1680 AATCGCCGCTCTAATCAAGTCCGTTCACGGAGACTGGTCACCGGCGATGATAAAATCGGC 1739
Query 1756 AATCATGACGACGGCGAGGATCACTGACAATAGGAACCGACCGATCGGAGATAGAGGCGC 1815
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1740 AATCATGACGACGGCAAGGATCACGGACAATAGGAACCGACCGATCGGAGATAGGGGCGC 1799
Query 1816 CGCGGGAGCTGAATCGGCGGCCACAGCGTTTGCGTTTGGAGCGGGAAACGTGGATCCCAC 1875
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1800 CGCGGGAGCTGAATCGGCAGCCACAGCGTTTGCGTTTGGAGCGGGACACGTGGATCCCAC 1859
Query 1876 GCGAGCGGTAGATCCCGGGCTGGTATACGATACCTCCACCGTCGATTATCTCAACTACTT 1935
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1860 GCGAGCGGTAGATCCGGGGATGGTATACGATACCTCCACCGTCGATTATCTCAACTACCT 1919
Query 1936 GTGCAGCTTGAACTACACGAGTGAGAGAATACT-CTTGTTCTCCGGCACTAACTACACGT 1994
|||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1920 GTGCAGCTTGAATTACACGAGTCAGAGAATACTTCT-GTTCTCCGGCACTAACTACACGT 1978
Query 1995 GTGCTAGTAACGCCGTCGTTTTGAGTCCCGGTGATTTGAACTATCCCTCGTTCGCGGTCA 2054
|| ||||||||| | |||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1979 GTCCTAGTAACGGCTTCGTTTTGAGTCCCGGCGATTTGAACTATCCTTCCTTCGCGGTCA 2038
Query 2055 ACCTCGTTAATGGCGCGAATTTGAAAACGGTGAGATATAAGAGGACTGTGACTAACGTTG 2114
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2039 ACTTCGTTAATGGCGCGAATTTGAAAACGGTGAGATATAAGAGGACTGTGACGAACGTTG 2098
Query 2115 GGTCACCGACTTGTGAGTATATGG-TGCACGTTGAGGAACCAAAAGGTGTGAAGGTGAGA 2173
|||||||| | ||||| ||||||| | ||||| |||||||| ||||||||||||||||||
Sbjct 2099 GGTCACCGGCGTGTGATTATATGGCT-CACGTCGAGGAACCCAAAGGTGTGAAGGTGAGA 2157
Query 2174 GTTGAACC-AAAGGTGCTCAAGTTCCAGAAGGCCAGAGAGAGGTTGAGTTATACGGTGAC 2232
|| || || |||| | || ||||||||||||| ||||||||||||||||||||||||||
Sbjct 2158 GTGGAGCCGAAAGTT-CTTAAGTTCCAGAAGGTGAGAGAGAGGTTGAGTTATACGGTGAC 2216
Query 2233 GTATGATGCAGAAGCTTCGAGAAATTCGTCTTCGTCTTCCTTTGGAGTTTTGGTTTGGAT 2292
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2217 GTTTGATGCAGAAGCTTCGAGAAATTCATCTTCGTCTTCCTTTGGAGTTTTGGTTTGGAT 2276
Query 2293 ATGTGACAAATACAACGTCAGAAGCCCAATCGCCGTGACGTGGGAATAA 2341
|||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 2277 TTGTGACAAGTACAACGTCAGAAGCCCTATCTCCGTGACGTGGGAATAA 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92711656330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5