BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01970.1 Length=1649 Score E Sequences producing significant alignments: (Bits) Value Ahg470077 jgi|Araly1|470077|fgenesh2_kg.1__31__AT1G01970.1 2331 0.0 > Ahg470077 jgi|Araly1|470077|fgenesh2_kg.1__31__AT1G01970.1 Length=1492 Score = 2331 bits (1262), Expect = 0.0 Identities = 1421/1497 (95%), Gaps = 13/1497 (1%) Strand=Plus/Plus Query 1 CACCGCTCTAAATTCTAATCTATCCACACCAGCTCTGTCTATGAACTTTGCTTGGCTCAT 60 ||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||||| Sbjct 1 CACCGCTCTAAATTCTAATCTAT-C-CACCAGCTCTGTATATGAACTTTGCTTTGCTCAT 58 Query 61 CTCCTTTATCTCCAGTTTCTCCTGAGCTCTGCTTTTTGTAAGTAATCATCAGAGAAGCTC 120 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 59 CTCTTTTATCTCCAGTTTCT-CTGAGCTCTGCTTTTTGTAAGTAATCATCAGAGAAGCTC 117 Query 121 AATTCTGTACTTGTATGATCCTCAATTAGGCCTTTG-A-ATTCATGACTTGTTTTCTAGA 178 |||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||| Sbjct 118 AATTCTGTACTTGTATGATCCTTAATTAGGCCTTTGAATATTCCTGACTTGTTTTCTAGA 177 Query 179 GATTAGGTTCATGTGAAATCATACGGCCGCCAAATTTAGGTTTTTCTCTTTTAGTTC--- 235 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 178 GATTCCGTTCATGTGAAATCATACGGCCGCCAAATTTAGGTTTTT-TCTTTTAGTTCTGG 236 Query 236 T-T-GAGGTATACAATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAAT 293 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TCTGGAGGTCTACAATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAAT 296 Query 294 GTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAAACCCATTAC 353 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 297 GTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAATCCCATTAC 356 Query 354 TTGTAGAATCCCATCTTAATAGGCTCTGTAGTTGCAAATGTAATGCGAGTCTGGCCATTG 413 |||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 357 TTGTAGAATCCCGTCTAAATAGGCTCTGTAGTTGCAAATGTAGTGCGAGTTTGGCCATTG 416 Query 414 GCGAAGTTGTGGAGAAGGAAGATGCAGAGCAAAGCCGTAGTTTTAATTGGGCTGATGTTG 473 |||| ||||| |||||||||||| |||| |||| || ||| | |||||||| |||||||| Sbjct 417 GCGAGGTTGTAGAGAAGGAAGATACAGAACAAATCCCTAGGTCTAATTGGGTTGATGTTG 476 Query 474 GTCTGAATCTGACAGAAGAACAAGACGAGGCAATCACTCGGATTCCTATTAAGATGTCAA 533 ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 477 GTCTGGATCTGACAGAAGAACAGGATGAGGCAATCACTCGGATTCCTATTAAGATGTCAA 536 Query 534 AACGTTGTCAAGCGCTTATGCGGCAAATTATTTGCTTCTCCCCCGAAAAGGGAAGCTTTT 593 ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 537 AACGTTGTCAAGCGCTTATGCGGCAGATTATTTGCTTCTCCAGCGAAAAGGGAAGCTTTT 596 Query 594 GCGATTTGTTGGGTGCTTGGCTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTA 653 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 597 GTGATTTGTTGGGTGCTTGGGTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTA 656 Query 654 TTCTTAAAGAGTTGAAGAATCTTGACTCTCCGTTTTATATCAAGGTGGCTGAATTTTCGC 713 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 657 TTCTTAAAGAGTTGAAGAATCTTGACTCTCCCTTTTATATCAAGGTGGCTGAATTTTCGC 716 Query 714 TGCTCCAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTATTATG 773 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 717 TGCTCGAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTACTATG 776 Query 774 GGAAGCTAAACCAAGTAGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCT 833 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GGAAGCTAAACCAAGTGGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCT 836 Query 834 TTCTTATTGATCAGGTGACCCTTACTGCAATGGTTCAGTTGTACAGCAAGGCAGGCTGTC 893 |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| || Sbjct 837 TTCTCATTGATCAGGTGACCCTTACTGCAATAGTTCAGTTGTATAGCAAGGCAGGCTATC 896 Query 894 ATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAACCACTAGACT-AC 952 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 897 ATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAGCCACTAGA-TAAT 955 Query 953 CGATCCTATGGTTCAATGATTATGGCCTACATCAGAGCTGGTGTCCCCGAGAAAGGAGAG 1012 ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 956 CGATCATATGGTTCAATGATTATGGCCTACATTAGAGCTGGTGCCCCCGAGAAAGGAGAG 1015 Query 1013 TCTCTACTTAGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCA 1072 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 GCTTTACTCCGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCA 1075 Query 1073 TTGTTGAGAGATTACTCTATGGGCGGAGACGCGGAAGGAGCTAAGCGGGTTTTTGATGCA 1132 |||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1076 TTGTTGAGAGCTTACTCTATGGGTGGAGACGCGGAAGGAGCTAAGCGGGTCTTTGATGCC 1135 Query 1133 GTTCAAATTGCAGGTATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATAC 1192 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 GTTCAAATTGCGGGGATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATAC 1195 Query 1193 AGTGTCTCGGGTCAGAGCCAGAATGCTCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGA 1252 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1196 AGTGTCTCAGGTCAGAGTCAGAATGCGCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGA 1255 Query 1253 ATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAG 1312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 ATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAG 1315 Query 1313 CTAAATGAAGCGTTAGGATTCTTGGTAGAGCTTGAGAAAGACTCTATAATGTTAGGGAAA 1372 ||||| ||||| ||||| |||||||| |||||||||||||||||||||||| |||||||| Sbjct 1316 CTAAACGAAGCATTAGGGTTCTTGGTTGAGCTTGAGAAAGACTCTATAATGGTAGGGAAA 1375 Query 1373 GAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAA 1432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 GAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAA 1435 Query 1433 TTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAACCCCTCTAACATTGTGGGCTT 1489 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1436 TTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAGCCCCTCTAAGATTGTGGGCTT 1492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61820467635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5