BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02150.1
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918726 jgi|Araly1|918726|scaffold_100007.1 2695 0.0
> Ahg918726 jgi|Araly1|918726|scaffold_100007.1
Length=1615
Score = 2695 bits (1459), Expect = 0.0
Identities = 1567/1619 (97%), Gaps = 8/1619 (0%)
Strand=Plus/Plus
Query 133 GAAACCTAACGAGTAACGACGAGAGATGCTTCTTCAGGCGGCGGTGCAGAACCGCAATGT 192
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAACCTAACGAGTAACGAC--GAGATGCTTCTTCAGGCGGCGGTGCAGAACCGCAATGT 58
Query 193 TCCACTGGCTTCTTCCGCCTCCTACTCTCGTCTCCTTCGCTGCAGATCTCCTGTCGTCTC 252
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 59 TCCACTGGCTTCTTCCGCCTCCTACTCCCGTCTCCCTCGCTGCAGATCTCCTGTCGTCTC 118
Query 253 CGTAGCTGCTCTCTCGAAGAAGACGGCAGCAATCGTGTGCTCCATCTCCCAGGTTTATGG 312
|||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 CGTA---GCTCTCGCGAAGAAGACGGCAGCAATCGTGTGCTCCATCTCCCAGGTCTATGG 175
Query 313 CTACGGCACGGTGGACTACGAGAGAAGGCCGATTGTCCAGTGGAATGCCATCTACAAGAA 372
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 176 CTACGGCACGGTTGACTACGAGAGAAGGCCGATTATCCAGTGGAATGCCATCTACAAGAA 235
Query 373 GATTTCGCTGATGGAGAAGCCAGAGCTTGGCGCTGCTTCCGTCTTGAATCAGTGGGAGAA 432
|||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 236 GATTTCTCTCATGGAAAAGCCGGAGCTTGGCGCTGCTTCCGTCTTGAATCAGTGGGAGAA 295
Query 433 AGCCGGCCGCAAGCTTACCAAGTGGGAGCTCTGTCGGGTCGTCAAGGAGCTTCGCAAGTA 492
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGGCGGCCGCAAGCTTACCAAGTGGGAGCTCTGTCGGGTCGTCAAGGAGCTTCGCAAGTA 355
Query 493 CAAGCGTGCCAACCAAGCTCTCGAGGTGTACGACTGGATGAACAACAGAGGCGAAAGGTT 552
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CAAGCGTCCCAACCAAGCTCTCGAGGTGTACGACTGGATGAACAACAGAGGCGAAAGGTT 415
Query 553 TCGGTTGTCTGCAAGTGATGCTGCAATCCAGCTCGACTTAATCGGCAAAGTGCGTGGCAT 612
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCGATTGTCTGCAAGTGATGCTGCAATCCAGCTCGACTTAATCGGCAAAGTGCGTGGCAT 475
Query 613 TCCAGACGCCGAAGAGTTCTTCCTCCA-GCTCCCTGAGAATTTTAAGGACCGGAGAGTTT 671
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 476 TTCAGACGCCGAAGAGTTCTTCCT-CACGCTCCCTGAGAATTTTAAGGACCGGAGAGTTT 534
Query 672 ATGGTTCCCTCCTCAATGCCTATGTGAGGGCCAAGTCGAGAGAAAAGGCTGAAGCCCTGC 731
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 535 ATGGTTCCCTCCTCAATGCCTATGTGAGGGCCAAGTCGAGAGAAAAGGCTGAAGTCCTGC 594
Query 732 TCAACACCATGAGGGACAAAGGTTACGCCCTGCACCCGCTTCCCTTCAACGTCATGATGA 791
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 595 TCAACACCATGAGGGACAAAGGATACGCCCTGCACCCGCTTCCCTTCAACGTCATGATGA 654
Query 792 CTCTCTACATGAACCTCAGGGAGTATGACAAAGTCGACGCTATGGTCTTCGAGATGAAGC 851
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 CTCTCTACATGAACCTTAGGGAGTATGACAAAGTCGACGCAATGGTCTTCGAGATGAAGC 714
Query 852 AGAAAGATATACGTCTCGACATTTACTCCTACAACATCTGGCTCTCCTCTTGCGGCTCCT 911
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 715 AAAAAGATATACGTCTCGACATTTACTCCTACAACATCTGGCTCTCCTCATGCGGCTCCT 774
Query 912 TAGGATCAGTTGAGAAAATGGAACTAGTGTATCAGCAGATGAAATCGGATGTTTCCATTT 971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TAGGATCAGTTGAGAAAATGGAACTAGTGTATCAGCAGATGAAATCGGATGTTTCCATTA 834
Query 972 ATCCCAACTGGACCACGTTTAGCACAATGGCCACAATGTACATAAAGATGGGTGAAACTG 1031
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 835 ATCCCAACTGGACCACCTTTAGCACAATGGCCACCATGTACATAAAGATGGGTGAAACTG 894
Query 1032 AGAAAGCCGAAGATGCACTGAGGAAGGTTGAAGCAAGGATTACTGGTCGTAATCGCATTC 1091
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 AGAAAGCCGAAGCTGCACTGAGGAAGGTTGAAGCCAGGATTACTGGTCGTAATCGCATTC 954
Query 1092 CGTATCACTACCTCTTGAGTTTGTATGGCAGCCTTGGTAACAAGAAAGAGCTGTACCGAG 1151
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 955 CATATCACTACCTCTTGAGTTTGTATGGCAGCGTTGGTAACAAGAAAGAGCTGTACAGAG 1014
Query 1152 TCTGGCACGTCTACAAATCTGTTGTCCCGAGCATTCCCAATTTGGGTTACCATGCCTTGG 1211
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TCTGGAACGTCTACAAATCTGTTGTCCCGAGCATTCCCAATTTGGGTTACCATGCCTTGG 1074
Query 1212 TCTCGTCGCTGGTGAGGATGGGAGACATTGAAGGGGCCGAGAAGGTATATGAGGAATGGC 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TCTCGTCGCTGGTGAGGATGGGAGACATTGAAGGGGCCGAGAAGGTATATGAGGAATGGC 1134
Query 1272 TTCCAGTCAAGTCTTCTTATGACCCCAGGATACCAAATCTTCTGATGAATGCGTATGTCA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1135 TTCCAGTCAAGTCTTCTTATGACCCCAGGATACCAAATCTTCTGATGAATGTGTATGTCA 1194
Query 1332 AAAACGACCAACTAGAGACAGCTGAGGGGTTGTTCGACCACATGGTTGAAATGGGAGGAA 1391
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AAAACGACCAACTAGAGAAAGCTGAGGGGTTGTTCGACCACATGGTTGAAATGGGAGGAA 1254
Query 1392 AACCAAGTTCAAGTACGTGGGAGATTCTAGCTGTTGGTCATACCAGAAAGAGGTGTATTT 1451
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1255 AACCAAGTTCAAGTACGTGGGAGATTCTAGCTGATGGTCATACCAGAAAGAGGTGTATTC 1314
Query 1452 CAGAGGCTTTGACTTGTCTTAGAAATGCTTTTTCGGCTGAAGGGTCCAGCAATTGGAGGC 1511
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1315 CAGAGGCTTTGACTTGTCTGAGAAAAGCTTTTTCGGCTGAAGGGTCCAGCAATTGGAGGC 1374
Query 1512 CCAAGGTGTTGATGCTGTCTGGTTTCTTCAAGCTCTGTGAAGAGGAATCGGATGTTACCA 1571
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CCAAGGTGTTGATGCTGTCCGGTTTCTTCAAGCTCTGTGAAGAGGAATCGGATGTTACCA 1434
Query 1572 GTAAAGAGGCCGTTTTGGAATTGTTAAGGCAGTCGGGGGATCTTGAAGACAAATCTTACC 1631
||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 1435 GTAAAGAGGCCGTTTTGGAATTGTTGAGGCAGTCGGGGCATCTTGAAGACAAAGCTTACC 1494
Query 1632 TAGCTCTTATTGATGTGGACGAAAACAGAACAGTAAACAACAGTGAAATCGATGCCCATG 1691
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AAGCACTTATTGATGTGGACGAAAACAGAACAGTAAACAACAGTGAAATCGATGCCCATG 1554
Query 1692 AGACCGATGCGCTTCTAACACAGCTACAAGATGATTTGTAATCTGATAGTCCTAGATCT 1750
|||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1555 AGACCGATGCACTTCTAACACAGCTACAAGATGATTTGTAATCA-AGAGTCCTAGATCT 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71762021580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5