BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02270.1

Length=1645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470188 jgi|Araly1|470188|fgenesh2_kg.1__142__AT1G02270.1         2516    0.0  


> Ahg470188 jgi|Araly1|470188|fgenesh2_kg.1__142__AT1G02270.1
Length=1553

 Score = 2516 bits (1362),  Expect = 0.0
 Identities = 1495/1559 (96%), Gaps = 9/1559 (1%)
 Strand=Plus/Plus

Query  1     AAAAAGATCTGTTGAGAGAATTCGAAAGAAAAACTCAAATGCAAAGCCATCAGAATCGAA  60
             |||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1     AAAAAGATCT-TT-TGAGAATTCGAAAAAAAAACTCAAATGCAAAGCCATCAGAATCGAA  58

Query  61    GCAGGCTGAGCTTGATTCTACGGTCTAGATTCATCCCTTCCTTCTCTTCACCACTCTCCC  120
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59    GCAGGCTGAGCTTAATTCTACGGTCTAGATTCATCCCTTCCTTCTCTTCACCACTCTCCC  118

Query  121   TCTTCGTCGTCCTCGCTGCTGTTCCTCTTCCGATCTACTTTTCCGGTCTACTCTCCGGCA  180
             ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct  119   TCTTCGTCGTCCTCGCTGCCGTTCCTTTTCCGATCTACTTTTCCGGTCTACTCTCCGGCA  178

Query  181   GAAACAACAAGCCGCTTTCAGTTATGAGACTCAACTCCAACTTAGCTTCTTCAATGGTGG  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179   GAAACAACAAGCCGCTTTCAGTTATGAGACTCAACTCCAACTTAGCTTCTTCAATGGTGG  238

Query  241   AATCGAATATTTCTTGTACCACTTTCAATATCTTGGCTCCGATTTATAAACGCGTTGATC  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239   AATCGAATATTTCTTGTACCACTTTCAATATCTTGGCTCCGATTTATAAACGCGTTGATC  298

Query  301   AAAAGAATCATAGCACTCGAGAGAGCGATT-TCCGCACGCTTTGGTTAGCTCGTAACCAG  359
             ||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct  299   AAAAGAATCATAGCATTCGAGAGAGCGATTCTC-GCTCGCTTTGGTTAGCTCGTAACCAG  357

Query  360   AGGATTTTAGATTTGTTACTCCATCAACGCTCTTCAGTTATCTGTCTCCAGGAAGTTTGG  419
             ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  358   AGGATTTTAGATTTGCTAATCCATCAACGCTCTTCAGTTATCTGTCTCCAGGAAGTTTGG  417

Query  420   GTTGGGAATGAGGAATTAGTGAACATGTACCACCACCAGCTTT-CATCTTCAGGCTACAC  478
             |||||||||||||||||||| |||||||||||| | ||||||  || |||||||||||||
Sbjct  418   GTTGGGAATGAGGAATTAGTCAACATGTACCACGAGCAGCTTGGCA-CTTCAGGCTACAC  476

Query  479   TATTTATC-AGTTGGCTAGAACAAACAGTCGTGGTGATGGTCTTTTAACAGCCATTCATA  537
             ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  477   TATTT-TCCAGTTGGCTAGAACAAACAGTCGTGGTGATGGTCTTTTAACAGCCATACATA  535

Query  538   AGGACCATTTTAAAGTTGTAAATTACCGGGAGCTGCTCTTTAACGATTTTGGAGACCGTG  597
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  536   AGGACCACTTTAAAGTTGTAAATTACCGGGAGCTGCTCTTTAACGATTTTGGAGACCGTG  595

Query  598   TTGCTCAGCTCTTACATGTCAAAACAGTTATTCCCTTTCCGCTTAATGGAAAGCAAGACG  657
             ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  596   TTGCTCAGCTCTTACATGTCAAAACAGTTATTCCCTTTCCGCTTAATGGGAAGCAAGAAG  655

Query  658   TTCAACAAGAAGTTATTATAGTGAACACTCACCTCTTGTTTCCTCACGATTCTAGTTTGT  717
             ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  656   TTCAACAAGAAGTCATTATAGTGAACACTCACCTGTTGTTTCCTCACGATTCTAGTTTGT  715

Query  718   CTATTGTAAGACTGCATCAGGTTTACAAAATTCTTGAATATCTGGAAGCTTACCAAAAGG  777
             ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  716   CTATTGTAAGACTTCATGAGGTTTACAAAATTCTTGAATATCTGGAAGCTTACCAAAAGG  775

Query  778   AAAATAAACTTAATCACATGCCCATTATTCTCTGCGGTGACTGGAATGGAAGCAAACGCG  837
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  776   AAATTAAACTTAATCACATGCCCATTATTCTCTGCGGTGACTGGAATGGAAGCAAACGCG  835

Query  838   GGCATGTCTACAAATTTTTGAGATCTCAAGGGTTTATTTCATCATACGATGATGCTCATC  897
             |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct  836   GGCATGTCTACAAATTCTTGAGATCTCAAGGGTTCATATCATCATACGATGATGCTCACC  895

Query  898   AGTATACCGACAGTGATGCTCATAGGTGGGTTAGCCACAGAAACCACAGGGGAAATATTT  957
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  896   AGTATACCGACAGTGATGCTCATAGGTGGGTTAGCCACAGAAACCACAGGGGAAATATAT  955

Query  958   GCGGAGTTGATTTCATATGGCTCTGTAACCCTAGTGATTCAAGAAAACCATTGAGAACAA  1017
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  956   GCGGAGTTGATTTCATATGGCTCTGTAACCCTAGCGATTCAAGAAAACCATTGAGAACAA  1015

Query  1018  GTTGGGTGGAAGCTGTTTTCAGCATTATCAAGTATCAACTACACAAAGCTTCCATAGCCG  1077
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1016  GTTGGGTGGAAGCTGTTTTCAGCATTATCAAGTATCAACTCCACAAAGCTTCCATAGCCG  1075

Query  1078  AGGACGATGCCTTTACTTTTCTTGGGGCAAAAAATCACAGTGATTCACTAACCTACTCTG  1137
             |||||||||  ||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  1076  AGGACGATGTATTTGCTTTTCTTGGGGCAAATAATCACAGTGATTCACTCACCTACTCTG  1135

Query  1138  ACTTTTGCCTAGCACTTCAAAAGGTAAATCTAACGGGTATTCCACATGGACTTAGCTTCG  1197
             |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  1136  ACTTTTGCCTAGCACTTCAAAAGGTAAATCTAACAGGTATTCCGCATGGACTTAGCTTCG  1195

Query  1198  AAGAGACAAAAGAGCTATGGGTCCGAGCTGATCTTGATGGAAATGGTGTCTTCGACTATG  1257
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1196  AAGAGACAAAAGAGCTATGGGTTCGAGCTGATCTTGATGGAAATGGTGTCTTCGACTATG  1255

Query  1258  AAGAACTTAAGAAAATTTGGAACATGACGATGGTAAATCAACCTGGAAACTGCAAAGAGA  1317
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1256  AAGAACTTAAGAAAATTTGGAACATGACGATGGTAAATCAACCTGGAAACTGCAAAGAGA  1315

Query  1318  GTGTGATGGAGAGTAAGAAAGAAGAAGGAGAAGATGAAGCAATCGGATTGAAAGTGAATA  1377
             |||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  1316  GTGTGATGGAGAGTGACAAAGATGAAGGAGATGATGAAGCAATCGGATTGAAAGTGAATA  1375

Query  1378  AAGCAATTTTGTTTCCACAAGAAGCAGAGAAAGGATTGTGGCCGGAGAATTACAATATAT  1437
             ||||  | |||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  1376  AAGCTGTATTGTATCCACAAGAAGCAGAGAAAGGATTGTGGCCGGAGAATTACAATCTGT  1435

Query  1438  CCGATCATGCTTGTCTCACCGTACAATTCTCTCCAGTCAAAATGCTTTGTAGCTAAATTT  1497
             ||||||||||||| ||||||||||||||||| || ||||||||||| || |||||| |||
Sbjct  1436  CCGATCATGCTTGCCTCACCGTACAATTCTCGCCGGTCAAAATGCTATGCAGCTAAGTTT  1495

Query  1498  TGTTTAATTACGGCTCTTGTAAATGTAAAGAAGCAATGAGATTGAGATTTGCAATGAGA  1556
             |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1496  TGTTTAAT-ATGGCTCTTGTAATTGTAAAGAAGCAATGAGATTGAGATTTGCAATGAGA  1553



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61668106655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5