BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02270.1 Length=1645 Score E Sequences producing significant alignments: (Bits) Value Ahg470188 jgi|Araly1|470188|fgenesh2_kg.1__142__AT1G02270.1 2516 0.0 > Ahg470188 jgi|Araly1|470188|fgenesh2_kg.1__142__AT1G02270.1 Length=1553 Score = 2516 bits (1362), Expect = 0.0 Identities = 1495/1559 (96%), Gaps = 9/1559 (1%) Strand=Plus/Plus Query 1 AAAAAGATCTGTTGAGAGAATTCGAAAGAAAAACTCAAATGCAAAGCCATCAGAATCGAA 60 |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 AAAAAGATCT-TT-TGAGAATTCGAAAAAAAAACTCAAATGCAAAGCCATCAGAATCGAA 58 Query 61 GCAGGCTGAGCTTGATTCTACGGTCTAGATTCATCCCTTCCTTCTCTTCACCACTCTCCC 120 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 GCAGGCTGAGCTTAATTCTACGGTCTAGATTCATCCCTTCCTTCTCTTCACCACTCTCCC 118 Query 121 TCTTCGTCGTCCTCGCTGCTGTTCCTCTTCCGATCTACTTTTCCGGTCTACTCTCCGGCA 180 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 119 TCTTCGTCGTCCTCGCTGCCGTTCCTTTTCCGATCTACTTTTCCGGTCTACTCTCCGGCA 178 Query 181 GAAACAACAAGCCGCTTTCAGTTATGAGACTCAACTCCAACTTAGCTTCTTCAATGGTGG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GAAACAACAAGCCGCTTTCAGTTATGAGACTCAACTCCAACTTAGCTTCTTCAATGGTGG 238 Query 241 AATCGAATATTTCTTGTACCACTTTCAATATCTTGGCTCCGATTTATAAACGCGTTGATC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AATCGAATATTTCTTGTACCACTTTCAATATCTTGGCTCCGATTTATAAACGCGTTGATC 298 Query 301 AAAAGAATCATAGCACTCGAGAGAGCGATT-TCCGCACGCTTTGGTTAGCTCGTAACCAG 359 ||||||||||||||| |||||||||||||| || || ||||||||||||||||||||||| Sbjct 299 AAAAGAATCATAGCATTCGAGAGAGCGATTCTC-GCTCGCTTTGGTTAGCTCGTAACCAG 357 Query 360 AGGATTTTAGATTTGTTACTCCATCAACGCTCTTCAGTTATCTGTCTCCAGGAAGTTTGG 419 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 358 AGGATTTTAGATTTGCTAATCCATCAACGCTCTTCAGTTATCTGTCTCCAGGAAGTTTGG 417 Query 420 GTTGGGAATGAGGAATTAGTGAACATGTACCACCACCAGCTTT-CATCTTCAGGCTACAC 478 |||||||||||||||||||| |||||||||||| | |||||| || ||||||||||||| Sbjct 418 GTTGGGAATGAGGAATTAGTCAACATGTACCACGAGCAGCTTGGCA-CTTCAGGCTACAC 476 Query 479 TATTTATC-AGTTGGCTAGAACAAACAGTCGTGGTGATGGTCTTTTAACAGCCATTCATA 537 ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 477 TATTT-TCCAGTTGGCTAGAACAAACAGTCGTGGTGATGGTCTTTTAACAGCCATACATA 535 Query 538 AGGACCATTTTAAAGTTGTAAATTACCGGGAGCTGCTCTTTAACGATTTTGGAGACCGTG 597 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 AGGACCACTTTAAAGTTGTAAATTACCGGGAGCTGCTCTTTAACGATTTTGGAGACCGTG 595 Query 598 TTGCTCAGCTCTTACATGTCAAAACAGTTATTCCCTTTCCGCTTAATGGAAAGCAAGACG 657 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 596 TTGCTCAGCTCTTACATGTCAAAACAGTTATTCCCTTTCCGCTTAATGGGAAGCAAGAAG 655 Query 658 TTCAACAAGAAGTTATTATAGTGAACACTCACCTCTTGTTTCCTCACGATTCTAGTTTGT 717 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 656 TTCAACAAGAAGTCATTATAGTGAACACTCACCTGTTGTTTCCTCACGATTCTAGTTTGT 715 Query 718 CTATTGTAAGACTGCATCAGGTTTACAAAATTCTTGAATATCTGGAAGCTTACCAAAAGG 777 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 716 CTATTGTAAGACTTCATGAGGTTTACAAAATTCTTGAATATCTGGAAGCTTACCAAAAGG 775 Query 778 AAAATAAACTTAATCACATGCCCATTATTCTCTGCGGTGACTGGAATGGAAGCAAACGCG 837 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 AAATTAAACTTAATCACATGCCCATTATTCTCTGCGGTGACTGGAATGGAAGCAAACGCG 835 Query 838 GGCATGTCTACAAATTTTTGAGATCTCAAGGGTTTATTTCATCATACGATGATGCTCATC 897 |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| | Sbjct 836 GGCATGTCTACAAATTCTTGAGATCTCAAGGGTTCATATCATCATACGATGATGCTCACC 895 Query 898 AGTATACCGACAGTGATGCTCATAGGTGGGTTAGCCACAGAAACCACAGGGGAAATATTT 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 896 AGTATACCGACAGTGATGCTCATAGGTGGGTTAGCCACAGAAACCACAGGGGAAATATAT 955 Query 958 GCGGAGTTGATTTCATATGGCTCTGTAACCCTAGTGATTCAAGAAAACCATTGAGAACAA 1017 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 956 GCGGAGTTGATTTCATATGGCTCTGTAACCCTAGCGATTCAAGAAAACCATTGAGAACAA 1015 Query 1018 GTTGGGTGGAAGCTGTTTTCAGCATTATCAAGTATCAACTACACAAAGCTTCCATAGCCG 1077 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1016 GTTGGGTGGAAGCTGTTTTCAGCATTATCAAGTATCAACTCCACAAAGCTTCCATAGCCG 1075 Query 1078 AGGACGATGCCTTTACTTTTCTTGGGGCAAAAAATCACAGTGATTCACTAACCTACTCTG 1137 ||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1076 AGGACGATGTATTTGCTTTTCTTGGGGCAAATAATCACAGTGATTCACTCACCTACTCTG 1135 Query 1138 ACTTTTGCCTAGCACTTCAAAAGGTAAATCTAACGGGTATTCCACATGGACTTAGCTTCG 1197 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1136 ACTTTTGCCTAGCACTTCAAAAGGTAAATCTAACAGGTATTCCGCATGGACTTAGCTTCG 1195 Query 1198 AAGAGACAAAAGAGCTATGGGTCCGAGCTGATCTTGATGGAAATGGTGTCTTCGACTATG 1257 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1196 AAGAGACAAAAGAGCTATGGGTTCGAGCTGATCTTGATGGAAATGGTGTCTTCGACTATG 1255 Query 1258 AAGAACTTAAGAAAATTTGGAACATGACGATGGTAAATCAACCTGGAAACTGCAAAGAGA 1317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 AAGAACTTAAGAAAATTTGGAACATGACGATGGTAAATCAACCTGGAAACTGCAAAGAGA 1315 Query 1318 GTGTGATGGAGAGTAAGAAAGAAGAAGGAGAAGATGAAGCAATCGGATTGAAAGTGAATA 1377 |||||||||||||| | ||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1316 GTGTGATGGAGAGTGACAAAGATGAAGGAGATGATGAAGCAATCGGATTGAAAGTGAATA 1375 Query 1378 AAGCAATTTTGTTTCCACAAGAAGCAGAGAAAGGATTGTGGCCGGAGAATTACAATATAT 1437 |||| | |||| ||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1376 AAGCTGTATTGTATCCACAAGAAGCAGAGAAAGGATTGTGGCCGGAGAATTACAATCTGT 1435 Query 1438 CCGATCATGCTTGTCTCACCGTACAATTCTCTCCAGTCAAAATGCTTTGTAGCTAAATTT 1497 ||||||||||||| ||||||||||||||||| || ||||||||||| || |||||| ||| Sbjct 1436 CCGATCATGCTTGCCTCACCGTACAATTCTCGCCGGTCAAAATGCTATGCAGCTAAGTTT 1495 Query 1498 TGTTTAATTACGGCTCTTGTAAATGTAAAGAAGCAATGAGATTGAGATTTGCAATGAGA 1556 |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1496 TGTTTAAT-ATGGCTCTTGTAATTGTAAAGAAGCAATGAGATTGAGATTTGCAATGAGA 1553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61668106655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5