BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02305.1 Length=1407 Score E Sequences producing significant alignments: (Bits) Value Ahg918881 jgi|Araly1|918881|scaffold_100162.1 1858 0.0 Ahg918880 jgi|Araly1|918880|scaffold_100161.1 1461 0.0 Ahg490415 jgi|Araly1|490415|fgenesh2_kg.6__3549__AT4G01610.1 857 0.0 > Ahg918881 jgi|Araly1|918881|scaffold_100162.1 Length=1125 Score = 1858 bits (1006), Expect = 0.0 Identities = 1087/1126 (97%), Gaps = 6/1126 (1%) Strand=Plus/Plus Query 113 CAGAAGAGAAAGATCCATGGCTGATAATTGTATCAGACTTCTTCACTCAGCCTCTGTTTT 172 |||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||| Sbjct 5 CAGAAGAGAAAGATTCATGGCTGATAATTGTATCA-A--ACTTCACTTAGCCTCTGTTTT 61 Query 173 CTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGGGTATTGCAGCTGAAAA 232 ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 62 CTTCTTTTTAGGGCTTCTAATTTCATCCTTCAAC---TTGCAGGGTATTGCAGCAGAAAA 118 Query 233 TCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGAATGAGATTGTAAAGGAAGTCAA 292 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 119 TCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGAATGAGATTGTCAAGGAAGTCAA 178 Query 293 TGAGAATCCAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTGT 352 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 179 TGAGAATCCAAACGCTGGATGGAAAGCTGCTTTCAATGATCGGTTTGCAAACGTCACTGT 238 Query 353 TGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGT 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGT 298 Query 413 GCCTATTGTAAGCCATGATATATCTTTGAAGCTTCCAAAAGAATTTGATGCTAGAACCGC 472 |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 299 ACCTATTGTGAGTCATGATATATCTTTGAAGCTTCCTAAAGAATTTGATGCTAGAACCGC 358 Query 473 TTGGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCACTGTGGTTCTTGCTG 532 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 359 TTGGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCATTGTGGTTCATGCTG 418 Query 533 GGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATGT 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 419 GGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATAT 478 Query 593 TTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAA 652 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 479 TTCTTTATCTGTCAATGATCTCTTAGCATGTTGTGGATTCCTTTGCGGACAAGGTTGTAA 538 Query 653 TGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGA 712 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 539 CGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTAACTGAAGA 598 Query 713 GTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCGCTTACCC 772 ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 599 GTGTGATCCATACTTTGACAATACTGGCTGCTCTCACCCGGGATGTGAACCCGCTTACCC 658 Query 773 TACACCAAAATGTGCAAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACA 832 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TACACCAAAATGTGCGAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACA 718 Query 833 TTATGGTGTTAGTGCGTACAAGGTCAGATCTCACCCTGATGACATTATGGCAGAAGTTTA 892 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTATGGTGTTAGCGCGTACAAGGTCAGATCTCACCCTGATGACATTATGGCAGAAGTTTA 778 Query 893 CAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCGCATTACAAATC 952 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 779 CAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCACATTACAAATC 838 Query 953 TGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAACTTATTGG 1012 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 839 AGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAGCTTATTGG 898 Query 1013 CTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 1072 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 958 Query 1073 CTGGGGTGATGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACA 1132 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CTGGGGAGATGATGGTTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACA 1018 Query 1133 TGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTACTACTTCAGA 1192 |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1019 TGGTGTTGTAGCCGGTTTACCTTCAGACAGGAACGTATTTAAAGGTATTACTACTTCAGA 1078 Query 1193 TGATCTTCTTGTTTCCTCATTTTAAACAGGAATATGTGTCTCTACT 1238 |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1079 TGATCTTCTTGTTTCCTCATTTTAAACAGGAAGATGTGTCTCTACT 1124 > Ahg918880 jgi|Araly1|918880|scaffold_100161.1 Length=1122 Score = 1461 bits (791), Expect = 0.0 Identities = 1019/1127 (90%), Gaps = 23/1127 (2%) Strand=Plus/Plus Query 119 AGAAAGATCCATGGCTGATA---ATTGTATCAGACTTCTTCACTCAGCCTCTGTTTTCTT 175 ||| |||| ||||||||||| |||||||||||||||||||| ||||| | | || || Sbjct 11 AGAGAGATTCATGGCTGATAGTTGTTGTATCAGACTTCTTCACTTAGCCT-T-TGTT-TT 67 Query 176 CTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGGGTATTGCAGCTGAAAATCT 235 | || |||| ||||||||||||||||| |||||||||| |||||| | |||||| Sbjct 68 C---TT---GCTTTTAATTTCATCCTTCAAC---TTGCAGGGTACTGCAGCAGGAAATCT 118 Query 236 TTCCAAGCAGAAACTGACCTCA-TGGATTCTTCAGAATGAGATTGTAAAGGAAGTCAATG 294 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 119 TTCCAAGCAGAAACTGACCTCACT-GATTCTTCAGAATGAGATTGTAAAGGAAGTCAATG 177 Query 295 AGAATCCAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTGTTG 354 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 178 AGAATCCAAACGCTGGATGGAAAGCTTCTTTGAATGATCGGTTTGCAAACGCCACCGTTG 237 Query 355 CAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGTGC 414 ||||||||||||| || |||||||||||||||||||||||||||| || || ||||| | Sbjct 238 CAGAGTTTAAGCGTCTCCTTGGTGTTAAACCAACACCAAAGACGGCATACTTAGGTGTAC 297 Query 415 CTATTGTAAGCCATGATATATCTTTGAAGCTTCCAAAAGAATTTGATGCTAGAACCGCTT 474 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 298 CTATTGTAAGACATGATATATCTTTGAAGCTTCCAAAAGAATTTGATGCTAGAACAGCTT 357 Query 475 GGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCACTGTGGTTCTTGCTGGG 534 ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 358 GGTCACAGTGCACAAGTATTCCAAGGATCTTAGATCAGGGTCATTGTGGTTCTTGCTGGG 417 Query 535 CCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATGTTT 594 | ||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||| Sbjct 418 CATTTGGTGCTGTTGAATCACTGTCCGACAGGTTTTGCATCAAATATAACTTGAATGTTT 477 Query 595 CTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAATG 654 | ||||||| ||||||| || |||||||||||||||| |||||||||| ||||||||||| Sbjct 478 CCTTATCTGCCAATGATGTTGTAGCATGTTGTGGATTACTTTGCGGTCTAGGTTGTAATG 537 Query 655 GTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGAGT 714 |||||| |||||| | ||| |||| ||||||||| ||||||||||||| || ||||||| Sbjct 538 GTGGATTCCCAATGGGTGCATGGCTGTACTTTAAATACCACGGTGTAGTAACCGAAGAGT 597 Query 715 GTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCGCTTACCCTA 774 ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 598 GTGATCCATACTTTGACAATACTGGTTGCTCTCACCCGGGATGTGAACCCGGTTACCCTA 657 Query 775 CACCAAAATGTGCAAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACATT 834 |||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||| | Sbjct 658 CACCAAAATGTGTGAGGAAATGTGTTAGCGAAAACCAGCTATGGGGTGAATCAAAACACT 717 Query 835 ATGGTGTTAGTGCGTACA-AGGTCAGATC-TCACCCTGATGACATTATGGCAGAAGTTTA 892 ||||||| | || |||| | ||| ||| | ||||| | |||||||||||||| ||||| Sbjct 718 ATGGTGTCAACGCATACAGAA-TCA-ATCATGACCCTCAAGACATTATGGCAGAGGTTTA 775 Query 893 CAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCGCATTACAAATC 952 ||| || |||||||| |||||||| || || ||||||||||||||||| ||||||||||| Sbjct 776 CAAGAACGGACCTGTCGAGGTTGCTTTTACCGTTTACGAGGACTTTGCACATTACAAATC 835 Query 953 TGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAACTTATTGG 1012 |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 836 AGGAGTGTACAAGCACATAACGGGTACTAAGATTGGAGGTCATGCTGTTAAGCTTATTGG 895 Query 1013 CTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 1072 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 896 CTGGGGAACTTCTGATGACGGCGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 955 Query 1073 CTGGGGTGATGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACA 1132 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 956 CTGGGGTGATGATGGTTACTTCAAGATCAGGAGAGGAACGAACGAATGTGGCATTGAACA 1015 Query 1133 TGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTT-AAAGGTATTACTACTTCAG 1191 ||||||||||| ||||||||||||||||||||||| ||| |||| ||| || ||||||| Sbjct 1016 CGGTGTTGTAGCCGGTTTACCTTCAGACAGGAACGT-GTTTAAAGATATAACCACTTCAG 1074 Query 1192 ATGATCTTCTTGTTTCCTCATTTTAAACAGGAATATGTGTCTCTACT 1238 |||||||||| |||||||||||||||||| || ||||||||||||| Sbjct 1075 ATGATCTTCTGGTTTCCTCATTTTAAACAACAAGATGTGTCTCTACT 1121 > Ahg490415 jgi|Araly1|490415|fgenesh2_kg.6__3549__AT4G01610.1 Length=1368 Score = 857 bits (464), Expect = 0.0 Identities = 811/979 (83%), Gaps = 21/979 (2%) Strand=Plus/Plus Query 210 TTGCAGGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTC-ATGGATTCTTCA 268 ||| ||||||| ||||| ||||||||| |||| |||||||||| ||| | ||| ||||| Sbjct 210 TTGAAGGGTATAGCAGCAGAAAATCTTACCAAACAGAAACTGAACTCGA-AGATACTTCA 268 Query 269 GAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCTTCTTTCAA 328 | |||||||||| ||| ||||||| | |||||||||||||||||||||||| || | || Sbjct 269 GGATGAGATTGTGAAGAAAGTCAACCAAAATCCAAACGCTGGATGGAAAGCTGCTATAAA 328 Query 329 TGATCGGTTTGCAAACGCCACTGTTGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAAC 388 |||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 329 TGATCGATTTTCAAACGCCACTGTTGCAGAGTTTAAGCGCCTTCTCGGTGTTAAACCAAC 388 Query 389 ACCAAAGACGGAATTT-TTGGGTGTGCCTATTGTAAGCCATGATATATCTTTGAAGCTTC 447 ||| |||| | | ||| || ||||| ||| |||||||||||||| |||||||||||| | Sbjct 389 ACCGAAGAAGCA-TTTCTTAGGTGTTCCTGTTGTAAGCCATGATCCATCTTTGAAGCTAC 447 Query 448 CAAAAGAATTTGATGCTAGAACCGCTTGGTCACAGTGCACCAGTATTGGAAGGATCTTAG 507 | |||| |||||||||||||| |||||| |||| ||||| |||||||||| |||||||| Sbjct 448 CTAAAGCTTTTGATGCTAGAACTGCTTGGCCACAATGCACTAGTATTGGAAAGATCTTAG 507 Query 508 ATCAGGGTCACTGTGGTTCTTGCTGGGCCTTTGGTGCTGTTGAATCACTGTCTGACAGAT 567 ||||||| || ||||||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct 508 ATCAGGGACATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTATCTGATAGAT 567 Query 568 TCTGCATCAAATATAACATGAATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTG 627 |||| ||| ||| | |||||| ||||| |||| || ||||||||| |||| ||||| | Sbjct 568 TCTGTATCCAATTTGGCATGAACATTTCTCTATCAGTTAATGATCTTCTAGCTTGTTGCG 627 Query 628 GATTCCTTTGCGGTCAAGGTTGTAATGGTGGATACCCAATTGCTGCGTGGCGGTACTTTA 687 |||||| ||| ||| | |||||| | ||||| |||||||||||||| |||| |||||| Sbjct 628 GATTCCGTTGTGGTGATGGTTGTGACGGTGGCTACCCAATTGCTGCTTGGCAATACTTTT 687 Query 688 AGCACCA-CGGTGTAGTCACTGAAGAGTGTGATCCATACTTCGACAATACTGGTTGCTCG 746 | | | |||||| || || |||||||||||||||||||| || ||||| || ||||| Sbjct 688 CGTAT-AGCGGTGTTGTAACCGAAGAGTGTGATCCATACTTTGATAATACCGGATGCTCT 746 Query 747 CACCCGGGATGTGAACCCGCTTACCCTACACCAAAATGTGCAAGGAAATGTGTTAGCGGA 806 |||||||| |||||||| || || |||||||| | |||| |||||||| ||||||| | Sbjct 747 CACCCGGGTTGTGAACCGGCATATCCTACACCGAGATGTTTGAGGAAATGCGTTAGCG-A 805 Query 807 -AACCAGCTTTGGCGTGAATCAAAACATTATGGTGTTAGTGCGTACAAGGTCAGAT-CTC 864 ||| | || ||| | || || || ||||| |||| ||| | |||| || | || || Sbjct 806 CAACAAACTATGGAGCGAGTCGAAGCATTACAGTGTCAGTACATACACTGTTA-ATTCT- 863 Query 865 AC-CCTGATGACATTATGGCAGAAGTTTACAAAAATGGACCTGTTGAGGT-TGCCTTCAC 922 | || | || || |||||||| ||||| || |||||||||||||| || | | || || Sbjct 864 AGTCCACAAGATATCATGGCAGAGGTTTATAAGAATGGACCTGTTGAAGTCT-CTTTTAC 922 Query 923 TGTTTACGAGGACTTTGCGCATTACAAATCTGGAGTGTACAAGCACATAACAGG-TACTA 981 |||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| | ||| Sbjct 923 TGTTTATGAGGATTTTGCTCATTACAAATCTGGAGTCTATAAGCACATAACAGGAT-CTA 981 Query 982 ACATTGGAGGTCATGCTGTTAAACTTATTGGCTGGGGAACTT-CTGATGACGGTGAAGAT 1040 ||||||||||||||||||||||||||||||| ||||||||| | | || || |||||| Sbjct 982 ACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCA-ACGAAGGCGAAGAT 1040 Query 1041 TATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATGATGGGTACTTCAAGATC 1100 ||||||||| | ||||||||||||||| || |||||||||||||||| || |||| ||| Sbjct 1041 TATTGGTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTATTTCATGATA 1100 Query 1101 AGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCA-GA 1159 ||||||||||| || |||||||| |||||| ||| || |||||||| |||||| | Sbjct 1101 AGGAGAGGAACTAATGAATGTGGAATTGAAGATGAACCAGTGGCTGGTTTGCCTTCAAG- 1159 Query 1160 CAGGAACGTAGTTAAAGGT 1178 |||||| || ||| ||||| Sbjct 1160 CAGGAATGT-GTTTAAGGT 1177 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52602628345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5