BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02330.1 Length=1058 Score E Sequences producing significant alignments: (Bits) Value Ahg918883 jgi|Araly1|918883|scaffold_100164.1 1399 0.0 > Ahg918883 jgi|Araly1|918883|scaffold_100164.1 Length=874 Score = 1399 bits (757), Expect = 0.0 Identities = 841/881 (95%), Gaps = 8/881 (1%) Strand=Plus/Plus Query 72 TCCGATAGTTTCTGGCTGCGATGCCGCCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGG 131 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 TCCGATAGTTTCTGTCTGCGATGCCACCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGG 60 Query 132 AGGAAGAAGAAGATAATGATGTAAACAAAGCCGCAATTTCAGAGGAAGAAGAGAAGCGAA 191 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 AGGAAGAGGAAGATAATGATGTAAACAAAGCCGCAATTTCAGATGAAGAAGAGAAGCGAA 120 Query 192 GATTGGCGTTAGAGGAGGTGAAGTTTTTGCAGAAGCTGCGAGAGAGGAAATTAGGTATCC 251 |||| ||||| ||||||||||||||| ||||||||||| ||||||| |||||||| |||| Sbjct 121 GATTAGCGTTGGAGGAGGTGAAGTTTCTGCAGAAGCTGAGAGAGAGAAAATTAGGGATCC 180 Query 252 CAGCTTTATCTTCTACGGCGCAATCTAGCATCGGAAAAGTGAAACCAGTGGAGAAAACTG 311 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 181 CAGCTTTA---TCTACGGCGCAATCTAGCATCGGAAAAGCGAAACCAGTGGAGAAAACTG 237 Query 312 AAACTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTG 371 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 AAGCTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTG 297 Query 372 TTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAACGGG 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 298 TTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAAAGGG 357 Query 432 G-AAGAAATATTGATGATGCAGAGGAGGTTGAGAACGAATTGAAGCGAGTGGAAGATGAG 490 | ||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 358 GGAAGAA-TATTGATGATGCAGAGGAAGTTGAGAATGAATTGAAGCGAGTGGAAGATGAG 416 Query 491 TTATATAAGATACCTGATCATCTTAAAGTCAAGAAGCGTAGCTCGGAAGAGAGCTCGACG 550 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 417 TTATATAAGATACCTGATCATCTTAAAGTTAAGAAGCGGAGCTCGGAAGAGAGCTCGACG 476 Query 551 CAGTGGACTACCGGAATAGCAGAAGTCCAACTCCCAATTGAATACAAGCTGAAGAACATT 610 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 477 CAATGGACTACCGGAATAGCAGAAGTCCAACTCCCAATCGAATACAAGCTGAAGAACATT 536 Query 611 GAAGAAACTGAAGCTGCCAAGAAGCTTTTGCAAGAGAGGAGACTTATGGGTCGGCCAAAG 670 |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 537 GAAGAAACAGAAGCTGCCAAGAAGCTTCTGCAAGAGAGGAGGCTTATGGGTCGGCCAAAA 596 Query 671 TCAGAGTTTAGTATCCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTAT 730 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TCAGAGTTTAGCATTCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTAT 656 Query 731 GCTGAGAAGCTTAGGAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCG 790 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GCTGAGAAGCTTAGAAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCG 716 Query 791 GACGGTGAAGCAGCTAAACCTTCTACTAGCAGTAGTACTAATAATAATGCTGATTCAGGG 850 || ||||||| ||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 717 GATGGTGAAGGTGCTAAACCTTCTACTAGCAGTAGTA--AC-AATAATGCTGATTCAGGG 773 Query 851 AAAAGCAGACAAGCAGCAACTGATCAAATCATGTTGGAACGATTTCGCAAGAGAGAGCGT 910 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 774 AAAAGCAGACAAGCAGCAACTGATCAAATCATGTTAGAACGATTTCGCAAGAGAGAGCGT 833 Query 911 AACCGTGTAATGCGAAGATAAAAGTAAAAACATGTTTGCAG 951 ||||||||||||||||||||||||||||| ||||||||||| Sbjct 834 AACCGTGTAATGCGAAGATAAAAGTAAAAGCATGTTTGCAG 874 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39380973261 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5