BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02620.1 Length=687 Score E Sequences producing significant alignments: (Bits) Value Ahg918912 jgi|Araly1|918912|scaffold_100193.1 568 3e-161 Ahg919135 jgi|Araly1|919135|scaffold_100416.1 422 2e-117 > Ahg918912 jgi|Araly1|918912|scaffold_100193.1 Length=622 Score = 568 bits (307), Expect = 3e-161 Identities = 332/344 (97%), Gaps = 1/344 (0%) Strand=Plus/Plus Query 47 AGGTTGATGCTCTGGTCTACTTAGTGGATGCTTATGACCAGGAGAGATTTGCAGAATCAA 106 |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 280 AGGTTGATGCGGTGGTCTACTTAGTGGATGCTTATGACAAGGAGAGATTTGCAGAATCAA 339 Query 107 AAAAGGAGCTTGATGCACTTCTCTCAGACGAATCCTTAGCCACTGTCCCATTCCTCATCT 166 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 340 AAAAGGAGCTTGATGCACTTCTCTCAGATGAATCCTTAGCCACTGTCCCATTCCTCATCC 399 Query 167 TAGGAAACAAAATCGACATACCTTACGCTGCATCTGAGGACGAGCTTCGATTCCATCTTG 226 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 400 TAGGGAACAAAATCGACATACCTTACGCTGCATCTGAGGACGAGCTTCGATACCATCTTG 459 Query 227 GCCTCTCCAATTTCACAACTGGTAAAGGCAAAGTGAATCTAACTGATTCGAATGTGAGAC 286 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 GTCTCTCCAATTTCACAACTGGTAAAGGCAAAGTGAATCTAACTGATTCGAATGTGAGAC 519 Query 287 CATTGGAGGTGTTTATGTGCAGCATTGTTAGAAAAATGGGATATGGTGAAGGCTTCAAGT 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 CATTGGAGGTGTTTATGTGCAGCATTGTTAGAAAAATGGGATATGGTGAAGGCTTCAAGT 579 Query 347 GGCTCTCTCAATACATCAAATAAGATCGCCCTATCGCTTTAAGT 390 |||||||||||||||||||||| |||||| ||||| |||| ||| Sbjct 580 GGCTCTCTCAATACATCAAATA-GATCGCGCTATCCCTTTGAGT 622 > Ahg919135 jgi|Araly1|919135|scaffold_100416.1 Length=1647 Score = 422 bits (228), Expect = 2e-117 Identities = 242/249 (97%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 439 GGACCAGAGAAGCCTTCATTCTTCAGGAAGCGTTTGCTGCGCGGACCGACCAGACTAGCA 498 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 648 GGACCAGAGAAGCCTTCATTCTTCAGGAAGAGTTTGATGCGCGGACCGACCAGACTAGCA 589 Query 499 TCACAGTATGGGGGAAGCGGACACAAGTTGATGTCCCAATAGACAAACGACTCACCCTCG 558 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 588 TCACAGTAGGGGGGAAGCGGACACAACTTGATGTCCCAATAGACAAACGACTCACCCTCG 529 Query 559 TACTTCACAGCCTCCAAGTCTTTCAATTTAGCGAGTCTTGTTGATAAATCTGTAGGAAGT 618 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 TACTTTACAGCCTCCAAGTCTTTCAATTTAGCGAGTCTTGTTGATAAATCTGTAGGAAGT 469 Query 619 GGAGGCCGCTCGTCTGTCCAGGGCTGATCGCGACTCATCATATCGCTCTCCATCAGATAA 678 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 468 GGAGGCCGCTCGTCCGTCCACGGCTGATCGCGACTCATCATATCGCTCTCCATCAGATAA 409 Query 679 GCAGTCACA 687 ||||||||| Sbjct 408 GCAGTCACA 400 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25237371054 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5