BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02620.1

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918912 jgi|Araly1|918912|scaffold_100193.1                        568    3e-161
  Ahg919135 jgi|Araly1|919135|scaffold_100416.1                        422    2e-117


> Ahg918912 jgi|Araly1|918912|scaffold_100193.1
Length=622

 Score =  568 bits (307),  Expect = 3e-161
 Identities = 332/344 (97%), Gaps = 1/344 (0%)
 Strand=Plus/Plus

Query  47   AGGTTGATGCTCTGGTCTACTTAGTGGATGCTTATGACCAGGAGAGATTTGCAGAATCAA  106
            ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  280  AGGTTGATGCGGTGGTCTACTTAGTGGATGCTTATGACAAGGAGAGATTTGCAGAATCAA  339

Query  107  AAAAGGAGCTTGATGCACTTCTCTCAGACGAATCCTTAGCCACTGTCCCATTCCTCATCT  166
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  340  AAAAGGAGCTTGATGCACTTCTCTCAGATGAATCCTTAGCCACTGTCCCATTCCTCATCC  399

Query  167  TAGGAAACAAAATCGACATACCTTACGCTGCATCTGAGGACGAGCTTCGATTCCATCTTG  226
            |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  400  TAGGGAACAAAATCGACATACCTTACGCTGCATCTGAGGACGAGCTTCGATACCATCTTG  459

Query  227  GCCTCTCCAATTTCACAACTGGTAAAGGCAAAGTGAATCTAACTGATTCGAATGTGAGAC  286
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  460  GTCTCTCCAATTTCACAACTGGTAAAGGCAAAGTGAATCTAACTGATTCGAATGTGAGAC  519

Query  287  CATTGGAGGTGTTTATGTGCAGCATTGTTAGAAAAATGGGATATGGTGAAGGCTTCAAGT  346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  520  CATTGGAGGTGTTTATGTGCAGCATTGTTAGAAAAATGGGATATGGTGAAGGCTTCAAGT  579

Query  347  GGCTCTCTCAATACATCAAATAAGATCGCCCTATCGCTTTAAGT  390
            |||||||||||||||||||||| |||||| ||||| |||| |||
Sbjct  580  GGCTCTCTCAATACATCAAATA-GATCGCGCTATCCCTTTGAGT  622


> Ahg919135 jgi|Araly1|919135|scaffold_100416.1
Length=1647

 Score =  422 bits (228),  Expect = 2e-117
 Identities = 242/249 (97%), Gaps = 0/249 (0%)
 Strand=Plus/Minus

Query  439  GGACCAGAGAAGCCTTCATTCTTCAGGAAGCGTTTGCTGCGCGGACCGACCAGACTAGCA  498
            |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  648  GGACCAGAGAAGCCTTCATTCTTCAGGAAGAGTTTGATGCGCGGACCGACCAGACTAGCA  589

Query  499  TCACAGTATGGGGGAAGCGGACACAAGTTGATGTCCCAATAGACAAACGACTCACCCTCG  558
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  588  TCACAGTAGGGGGGAAGCGGACACAACTTGATGTCCCAATAGACAAACGACTCACCCTCG  529

Query  559  TACTTCACAGCCTCCAAGTCTTTCAATTTAGCGAGTCTTGTTGATAAATCTGTAGGAAGT  618
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  528  TACTTTACAGCCTCCAAGTCTTTCAATTTAGCGAGTCTTGTTGATAAATCTGTAGGAAGT  469

Query  619  GGAGGCCGCTCGTCTGTCCAGGGCTGATCGCGACTCATCATATCGCTCTCCATCAGATAA  678
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  468  GGAGGCCGCTCGTCCGTCCACGGCTGATCGCGACTCATCATATCGCTCTCCATCAGATAA  409

Query  679  GCAGTCACA  687
            |||||||||
Sbjct  408  GCAGTCACA  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25237371054


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5