BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02680.1

Length=907
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918919 jgi|Araly1|918919|scaffold_100200.1                        599    1e-170


> Ahg918919 jgi|Araly1|918919|scaffold_100200.1
Length=415

 Score =  599 bits (324),  Expect = 1e-170
 Identities = 375/398 (94%), Gaps = 10/398 (3%)
 Strand=Plus/Plus

Query  129  AGAAG-AGATGAGTAACACACCAGCAGCGGCGGCGTCATCATCGTCTAAATCGAAAGCTG  187
            ||||| |||||||||||||||||||| |||| | |       ||||||||||||||||||
Sbjct  13   AGAAGAAGATGAGTAACACACCAGCAACGGC-G-G-------CGTCTAAATCGAAAGCTG  63

Query  188  CGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACTCTCTTTCAAAAAGAATTGCAGCATA  247
            |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  64   CGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACCCTCTTTCAGAAAGAATTGCAGCATA  123

Query  248  TGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGTCTGTGGCGCTTGTAGAAG  307
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  124  TGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGACTGTGGCGCTTGTAGAAG  183

Query  308  ACATTGTTGTGGAATACGTCACAGATTTGACACATAAAGCTCAAGAAATTGGTTCAAAGC  367
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  184  ACATTGTTGTGGAATACGTCACAGATTTGACACATAAGGCTCAAGAAATTGGTTCAAAGC  243

Query  368  GAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGA  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  244  GAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGA  303

Query  428  ACCGCTGTAGAGAACTGTTGGCGATGCAGGAAGAGCTGAAACAAGCACGCAAAGCTTTTG  487
            |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  304  ACCGGTGTAGAGAACTGTTGGCGATGCAAGAAGAGCTGAAACAAGCACGCAAAGCTTTTG  363

Query  488  ATGTCGACGAAAAGGAACTCGTTGATTGATCTTGCTTT  525
            |||| || || |||||||| ||||||||| ||| ||||
Sbjct  364  ATGTGGATGAGAAGGAACTAGTTGATTGACCTTTCTTT  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33624412794


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5