BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02680.1 Length=907 Score E Sequences producing significant alignments: (Bits) Value Ahg918919 jgi|Araly1|918919|scaffold_100200.1 599 1e-170 > Ahg918919 jgi|Araly1|918919|scaffold_100200.1 Length=415 Score = 599 bits (324), Expect = 1e-170 Identities = 375/398 (94%), Gaps = 10/398 (3%) Strand=Plus/Plus Query 129 AGAAG-AGATGAGTAACACACCAGCAGCGGCGGCGTCATCATCGTCTAAATCGAAAGCTG 187 ||||| |||||||||||||||||||| |||| | | |||||||||||||||||| Sbjct 13 AGAAGAAGATGAGTAACACACCAGCAACGGC-G-G-------CGTCTAAATCGAAAGCTG 63 Query 188 CGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACTCTCTTTCAAAAAGAATTGCAGCATA 247 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 64 CGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACCCTCTTTCAGAAAGAATTGCAGCATA 123 Query 248 TGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGTCTGTGGCGCTTGTAGAAG 307 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 124 TGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGACTGTGGCGCTTGTAGAAG 183 Query 308 ACATTGTTGTGGAATACGTCACAGATTTGACACATAAAGCTCAAGAAATTGGTTCAAAGC 367 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 184 ACATTGTTGTGGAATACGTCACAGATTTGACACATAAGGCTCAAGAAATTGGTTCAAAGC 243 Query 368 GAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGA 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 GAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGA 303 Query 428 ACCGCTGTAGAGAACTGTTGGCGATGCAGGAAGAGCTGAAACAAGCACGCAAAGCTTTTG 487 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 304 ACCGGTGTAGAGAACTGTTGGCGATGCAAGAAGAGCTGAAACAAGCACGCAAAGCTTTTG 363 Query 488 ATGTCGACGAAAAGGAACTCGTTGATTGATCTTGCTTT 525 |||| || || |||||||| ||||||||| ||| |||| Sbjct 364 ATGTGGATGAGAAGGAACTAGTTGATTGACCTTTCTTT 401 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33624412794 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5