BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02710.1
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470229 jgi|Araly1|470229|fgenesh2_kg.1__183__AT1G02710.1 261 2e-69
> Ahg470229 jgi|Araly1|470229|fgenesh2_kg.1__183__AT1G02710.1
Length=261
Score = 261 bits (141), Expect = 2e-69
Identities = 247/292 (85%), Gaps = 32/292 (11%)
Strand=Plus/Plus
Query 1 ATGGAAGCAGAAATCGTCGGGGAAGCTTCTGCGGCTGTGATAATGATCGGTGGTCTCGGC 60
||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCAGATATCCCCGGGGACGCTTCTGCGGCTGTGATAATGATCGGTGGTCTCGGC 60
Query 61 TTATTCGGAACACATTCATTGCAAGCCGGCGGCAACGGCGGTGGAAGCGGCAAGGGGCAG 120
||||||||||| |||||||||||||||||||||| ||||||||||||||| | || ||
Sbjct 61 TTATTCGGAACGCATTCATTGCAAGCCGGCGGCATCGGCGGTGGAAGCGG-A-GG---AG 115
Query 121 TGGTTACAtggtggtggtggtgaaggaggaggaggagaaggaggtggtggagaaggcggt 180
| | |||||||| | | | |||||||| | ||| ||||||||||
Sbjct 116 -G---A---GGTGGTGG-----A-G-A--AGGAGGAG--G----TGG---AGAAGGCGGT 150
Query 181 ggcggaCAGAAAATCTCTAAG-GGGGGTGGAGGCGGTGGTAGCGGTGGAGGACAAAGGAG 239
||||||||||||||||||| | |||||||||||||||||||||||||||||||| || |
Sbjct 151 GGCGGACAGAAAATCTCTA-GCGGGGGTGGAGGCGGTGGTAGCGGTGGAGGACATAGAAT 209
Query 240 TTCTAGTGGTGGCGGAGGAGGCGGAGGGGAAGGCGACGGAGGAGGTGGCTGA 291
|||||||||||||||||| || ||||| ||||| ||||||||||||||||||
Sbjct 210 TTCTAGTGGTGGCGGAGGCGGTGGAGGTGAAGGTGACGGAGGAGGTGGCTGA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10187542263
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5