BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02750.1 Length=1000 Score E Sequences producing significant alignments: (Bits) Value Ahg470234 jgi|Araly1|470234|fgenesh2_kg.1__188__AT1G02750.1 1179 0.0 Ahg490351 jgi|Araly1|490351|fgenesh2_kg.6__3485__AT4G02200.1 189 3e-47 > Ahg470234 jgi|Araly1|470234|fgenesh2_kg.1__188__AT1G02750.1 Length=919 Score = 1179 bits (638), Expect = 0.0 Identities = 858/955 (90%), Gaps = 52/955 (5%) Strand=Plus/Plus Query 55 GTAGTTTCTTGACATTTTCTTTCTGCTATCTCTTACACAATTGGGTATTTAGCTGACACG 114 |||||||||||||| | |||||| |||||| |||||||||||||||||||||||||| Sbjct 1 GTAGTTTCTTGACA---T-TTTCTG-TATCTCACACACAATTGGGTATTTAGCTGACACG 55 Query 115 ACGAAGAAGGTCTCTCATCAATTATCTGAGATTTTTACATAAG---AAAGGC-T-CCGA- 168 |||||| ||| || |||||||||||||||||||| | ||| | | | || Sbjct 56 ACGAAGGAGG----TC-TCAATTATCTGAGATTTTTATAAAAGCTCCGATTCGTGGAGAT 110 Query 169 -C--AAAGCAGATGGAAGACGATATGTGGTGCGTTAGCTCATCTGGTTCTTCTAGAAGCT 225 | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 111 TCATAAATCAGATGGAAGACGATATGTGGTGCGTTAGCTCATCTGGTTCTTCAAGAAGCT 170 Query 226 ATCGATCGGAAACTGCTGCTAAGTATCAATCAGGGCCTTATCAAGATTTGGAAGAGTTTG 285 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 171 ATCGATCAGAAACTGCTGCTAAGTATCAATCAGGGCCTTATCTAGATTTGGAAGAGTTTG 230 Query 286 AAGAAGTTGACGACGATATAGCAGTGGAGTATCC-ATGCCCGTTTTGCGCAAGTGATTAT 344 |||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||| Sbjct 231 AAGAAGTT---GACGATATAGCAGTGGAGTA-CCAATGCCCGTTTTGCGCGAGTGATTAT 286 Query 345 GATTTAGTTGAATTGTGTCACCATATCGACGAAGAACATCGTCATGAAGCTAACAATGGG 404 |||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 287 GATTTAATTGAATTGTGTCACCATATCGACGAAGAACATCATCTTGAAGCTAACAATGGG 346 Query 405 ATATGTCCTGTATGTAGCAAAAGGGTGAAGATGCATATGGTGGATCATATAACATCACAT 464 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347 ATATGTCCTGTTTGTAGCAAAAGGGTGAAGATGCATATGGTGGATCATATAACATCACAT 406 Query 465 CATAGAGATGTCTTGAAGAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTA 524 ||| | | ||| | ||||||||||| ||||||||||||||||||| | Sbjct 407 CAT----A------G-AGA-T------AAGGAAATGTCGTACAGGGAAGATCCATATTCA 448 Query 525 TCTGATAAATATCTTCAACCTCATCTTGATGAGTTGCCACCATCTATGAATCATCATCAG 584 |||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 449 TCTGATAAATATTTTCAACCTCCTCTTGATGAGTCGCCACCATCTATGACTCATCATCAT 508 Query 585 CATCCCTCTAA---ACATGTTTCCGATCAATTTTTATCGTTCATCAACAATTCTGCATTA 641 | | ||||||| ||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 509 CGTACCTCTAATTTTGTTGTTTCCGATCAATTTTTATCATTCATCGACAATTCTGCGTTA 568 Query 642 CCAAATCAGACCAAGCTTGTGCTGCCTGATTCAAGTGTAGAAGACAAGAATCCGATTAAG 701 |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| Sbjct 569 CCAAATCAGACCAAGCTTGTGCAGCCTGATTCAAGTGTAGAAAACAAGAATCTGATTAAG 628 Query 702 GATTCGTCAGCAGCAAAAG-AGGGTACATCGTCGTGTCCTTTATCGGATAGTGATAAATT 760 ||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||| Sbjct 629 GATTCGTCAACAGCAAAAGAAGGG-ACATCGTCGTCTCCTTTATCGGATAGTGATAAATT 687 Query 761 GGAGAAGGCAAAGAAGTGTGAGTTTGTACAGGGACTGTTGTCATCAGCCATGTTTGATGA 820 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 688 GGAGAAGGCAAAGAAGTGTGAGTTTGTACAGGGACTATTGTCATCAGCCATGTTTGGTGA 747 Query 821 TGAATGTGACT-CTTCTGAGTAAAATAAAGATGTGAAGTCGCCAATGGGAAAGG-CAGGT 878 |||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 748 TGAATGCGACTTCTTCTGAGTAAAATAAAGATGTGAAGTCGCCAATGGGGAAGGGCAGGT 807 Query 879 GATTGTCATTGTTGTAATTTTATTCAGCTCTATTTATATATATGCATCTTTTTTACAGAC 938 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 808 GATTGTCATTGTTGTAATTT-ATTCAGCTCTATTTATATAT--GCATCTTTTTTACAGAC 864 Query 939 ATAACACTAGCTTTAGCCTTATAATATAAGCTGATGAGTTTTCAGTTTGTTTCTT 993 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 865 ATAACACTAGCTTTAGTCTTATAATATAAGCTGATGAGTTTTCAGTTTGTTTCTT 919 > Ahg490351 jgi|Araly1|490351|fgenesh2_kg.6__3485__AT4G02200.1 Length=1196 Score = 189 bits (102), Expect = 3e-47 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 306 GCAGTGGAGTATCCATGCCCGTTTTGCGCAAG-TGATTATGATTTAGTTGAATTGTGTCA 364 |||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||| Sbjct 186 GCAGTGGATTATCCATGCCCGTTTTGTTC-AGATGATTATGATTTAGTTGAATTGTGTCA 244 Query 365 CCATATCGACGAAGAACATCGTC-ATGAAGCTAACAATGGGATATGTCCTGTATGTAGCA 423 ||||||||| || || |||| | | || |||||||||||||||||||| || ||||||| Sbjct 245 CCATATCGATGAGGAGCATCAACTA-GACGCTAACAATGGGATATGTCCGGTTTGTAGCA 303 Query 424 AAAGGGTGAAGATGCATATGGTGGATCATATAAC-ATCACATCATAGAGATGTCTTGAAG 482 | ||||||||||||||||||| ||||| || || | | || |||||||||||||| ||| Sbjct 304 GACGGGTGAAGATGCATATGGTTGATCACATTACCA-CGCAGCATAGAGATGTCTTCAAG 362 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37169844075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5