BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02816.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470240 jgi|Araly1|470240|fgenesh2_kg.1__194__AT1G02816.1 968 0.0
> Ahg470240 jgi|Araly1|470240|fgenesh2_kg.1__194__AT1G02816.1
Length=907
Score = 968 bits (524), Expect = 0.0
Identities = 639/691 (92%), Gaps = 21/691 (3%)
Strand=Plus/Plus
Query 176 CATGACTCTGCTTCCGATTTCAATCTTCTTCTTCTTTTTATT-TTGCATTCCTTCGCCAT 234
|||||||||||||||||||||||||||||||||||| || || || | || || | |||
Sbjct 142 CATGACTCTGCTTCCGATTTCAATCTTCTTCTTCTTCTTCTTCTT-C-TT--TTTGTCAT 197
Query 235 TAAT---CGCCGCCGCTAAC-GATGACGATATACCGACGGCGTACACTCTCCTCCAAAGC 290
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 198 TAATCGCCGCCGCCGCT-ACAGATGACGATATACCGACGGCGTACACTCTCCTCCAAAGC 256
Query 291 TACAACTTTCCCGTCGGGATTCTTCCTAAAGGAGTGGTGTCATATGATTTAGATAAATCT 350
|||||||||||||||||||| |||||||||||||| || || |||||| ||||| ||||
Sbjct 257 TACAACTTTCCCGTCGGGATCCTTCCTAAAGGAGTCGTATCGTATGATCTAGATGAATCC 316
Query 351 ACTGGTCA-ATTCCACGCGTATTTCAACAAATCGTGCAGTTTCGCTCTTCAAGGCTCTTA 409
||||| || ||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 317 ACTGG-CAGATTCCACGCCTATTTCAACAAATCGTGCAGTTTCGCTCTTCAAGGTTCTTA 375
Query 410 CCAATTGGATTACAAATCGACAATCTCTGGATACATATCGGAGAACAAGATCACGAAGCT 469
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 376 CCAATTGGATTACAAATCGACAATCTCTGGCTACATATCGGAGAACAAGATCACGAAACT 435
Query 470 TACCGGCGTGAAGGTGAAAGTTCTCTTCTTGTGGCTCAACATCGTTGAGGTTATTAGGAA 529
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 436 TACCGGCGTGAAGGTGAAAGTTCTCTTTTTGTGGCTCAATATCGTTGAGGTTATTAGGAA 495
Query 530 CGGAGACGAACTCGAGTTCTCCGTTGGGATCACATCGGCGAACTTCGAGATCGATGAGTT 589
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 496 CGAAGACGAACTCGAGTTCTCCGTCGGGATCACATCGGCGAACTTCGAGATCGATGAGTT 555
Query 590 TTACGAGTCGCCACAGTGTGGTTGCGGATTTGATTGCAAAACGAAGACGAAGACTTTGGG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTACGAGTCGCCACAGTGTGGTTGCGGATTTGATTGCAAAACGAAGACGAAGACTTTGGG 615
Query 650 AAGAAACCCTTTTGTTTCTTCGGTTTAAAGGTTAAGACTTCTTATTGCAGAATCTGAACT 709
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 616 AAGAAACCCTTTTGTTTCTTCGGTTTAAAGGTTAAGACTTTTTATTGCAAAATCTGAACT 675
Query 710 CTTTGGATGATTTATGTTCTTTCTCCAATCATTTAATTTTT----CAATCAATGCT-TT- 763
||||||||| | ||||||||||||||||||||| ||||||| | ||||||||| ||
Sbjct 676 CTTTGGATGCTCTATGTTCTTTCTCCAATCATT-AATTTTTTTTTCGATCAATGCTCTTT 734
Query 764 GTTTGTATCTCTTCTTAGGATCGAACCGAT-AAGTTGTATTTATGAACCGATCAGGAATA 822
|||||||||||||| |||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 735 GTTTGTATCTCTTCGTAGGATTGAACCGATGAA-TTGTATTTATGAACCGACCAGGAATA 793
Query 823 AAACAGTGGTGGAAAAAGTTAATTCTTATGT 853
|||| ||||||| ||||||| |||||||||
Sbjct 794 AAACGGTGGTGGGAAAAGTTGTTTCTTATGT 824
Score = 150 bits (81), Expect = 2e-35
Identities = 124/143 (87%), Gaps = 9/143 (6%)
Strand=Plus/Plus
Query 1 CTGATCAGATGTGCCAGCTATACAAAAGTCTCTCACGTCTCTCCCAGA-A-AAC-TCTTA 57
||||||||||| |||||| || ||||||||||||||||| ||||||| | | | |||
Sbjct 1 CTGATCAGATGGGCCAGC--TAGAAAAGTCTCTCACGTCTGTCCCAGAGATTTCTTTTTA 58
Query 58 TTTTATCGCCGAGAAAGTGACGGAAAACGAAATCCAAACGGGATAA-T--AAA-CCTAAA 113
|||| |||||||||||||||||||||||||||||||||| |||||| | ||| ||||||
Sbjct 59 TTTTCTCGCCGAGAAAGTGACGGAAAACGAAATCCAAACTGGATAAATCTAAAACCTAAA 118
Query 114 ACCTAAATTAGTGATTTAGCTAC 136
||||||| ||||||||| |||||
Sbjct 119 ACCTAAAGTAGTGATTTTGCTAC 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5