BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02820.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918938 jgi|Araly1|918938|scaffold_100219.1                        401    2e-111


> Ahg918938 jgi|Araly1|918938|scaffold_100219.1
Length=334

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 300/336 (89%), Gaps = 21/336 (6%)
 Strand=Plus/Plus

Query  151  TCGTAAAACCTATAAACCACAATGGCTCGTTCTCTCGCTAACGCTAAGATCCAATCCGTC  210
            ||| |||||| |||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  1    TCGAAAAACC-ATAAACCACAATGGCTCGTTCTCTCGCTAACGCTAAGATCCTCTCCGTC  59

Query  211  TTCGGCTCCGAAAAGCTCTCGAACGCCGTTTTCAGACGAGGGTTTGCCGCCGCAGCCAAA  270
            |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  60   TTCGTCTCCGAAAAGCTCTCAAACGCCGTTTTCAGACGAGGGTTTGCAGCCGCAGCCAAA  119

Query  271  ACGGCGTTAGATGGAAGCGTTT----C----G-A---------CCGCGGAGATGAAGAAG  312
            |||||||||||||| |||||||    |    | |         |||||||||||||||||
Sbjct  120  ACGGCGTTAGATGGGAGCGTTTCGAGCGGTGGAACCGCTTCTGCCGCGGAGATGAAGAAG  179

Query  313  AGA-GCTGGGGAAGCTTCAAGCGAGAAGGCACCATGGGTTCCAGATCCTAAAACCGGTTA  371
            | | | ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  180  A-ATGTTGGGGAATCTTCAAGCGAGAAGGCTCCATGGGTTCCAGACCCTAAAACCGGTTA  238

Query  372  TTACAGACCGGAAACCGTTTCTGAGGAGATTGACCCGGCTGAGCTACGAGCTATTCTCTT  431
            ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct  239  TTACAGACCGGAAACCGTTTCCGAGGAGATTGACCCGGCGGAGCTACGAGCTGTTCTCTT  298

Query  432  GAACAACAAGCAATAAATTTATTAAAAACCGTATTT  467
            |||||||||||||||||||||||||||| |||||||
Sbjct  299  GAACAACAAGCAATAAATTTATTAAAAATCGTATTT  334



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5