BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02820.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg918938 jgi|Araly1|918938|scaffold_100219.1 401 2e-111 > Ahg918938 jgi|Araly1|918938|scaffold_100219.1 Length=334 Score = 401 bits (217), Expect = 2e-111 Identities = 300/336 (89%), Gaps = 21/336 (6%) Strand=Plus/Plus Query 151 TCGTAAAACCTATAAACCACAATGGCTCGTTCTCTCGCTAACGCTAAGATCCAATCCGTC 210 ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 TCGAAAAACC-ATAAACCACAATGGCTCGTTCTCTCGCTAACGCTAAGATCCTCTCCGTC 59 Query 211 TTCGGCTCCGAAAAGCTCTCGAACGCCGTTTTCAGACGAGGGTTTGCCGCCGCAGCCAAA 270 |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 60 TTCGTCTCCGAAAAGCTCTCAAACGCCGTTTTCAGACGAGGGTTTGCAGCCGCAGCCAAA 119 Query 271 ACGGCGTTAGATGGAAGCGTTT----C----G-A---------CCGCGGAGATGAAGAAG 312 |||||||||||||| ||||||| | | | ||||||||||||||||| Sbjct 120 ACGGCGTTAGATGGGAGCGTTTCGAGCGGTGGAACCGCTTCTGCCGCGGAGATGAAGAAG 179 Query 313 AGA-GCTGGGGAAGCTTCAAGCGAGAAGGCACCATGGGTTCCAGATCCTAAAACCGGTTA 371 | | | ||||||| |||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 180 A-ATGTTGGGGAATCTTCAAGCGAGAAGGCTCCATGGGTTCCAGACCCTAAAACCGGTTA 238 Query 372 TTACAGACCGGAAACCGTTTCTGAGGAGATTGACCCGGCTGAGCTACGAGCTATTCTCTT 431 ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| Sbjct 239 TTACAGACCGGAAACCGTTTCCGAGGAGATTGACCCGGCGGAGCTACGAGCTGTTCTCTT 298 Query 432 GAACAACAAGCAATAAATTTATTAAAAACCGTATTT 467 |||||||||||||||||||||||||||| ||||||| Sbjct 299 GAACAACAAGCAATAAATTTATTAAAAATCGTATTT 334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5