BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02850.4 Length=1804 Score E Sequences producing significant alignments: (Bits) Value Ahg909946 jgi|Araly1|909946|Al_scaffold_0001_200 913 0.0 > Ahg909946 jgi|Araly1|909946|Al_scaffold_0001_200 Length=1482 Score = 913 bits (494), Expect = 0.0 Identities = 539/561 (96%), Gaps = 2/561 (0%) Strand=Plus/Plus Query 256 TCA-TGCCGGACACTCCGGAGTAGCAGCTGGAAATGTTGCATGTGACCAGTATCACAAAT 314 ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 242 TCACTGCAGGACACTCCGGAGTAGCAGCTGGAAGTGTTGCATGTGACCAGTATCACAAAT 301 Query 315 ACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCTATAT 374 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 302 ACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCCATAT 361 Query 375 CCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATCAATCCCAAGGGGCTACAATACT 434 ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 362 CCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATTAATGTCAAGGGGCTACAATACT 421 Query 435 ACAACAATCTTATTGATGAATTGATCACTCATGGAATCCAGCCACATGTTACATTGCACC 494 |||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 422 ACAACAGTCTTATTGATGAATTGATCGCTCATGGAATCCAGCCACACGTTACATTGCACC 481 Query 495 ACTTTGATCTCCCACAGGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCG 554 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 ACTTTGATCTTCCACAAGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCG 541 Query 555 TGAGAGACTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCAC 614 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TGAGAGGCTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCAC 601 Query 615 ATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGAATAA 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 602 ATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGATTAA 661 Query 675 CACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAAAGGAAACTCTTCCA 734 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 662 CACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAATGGAAACTCTTCCA 721 Query 735 TTGAGCCTTACATTGCCGTACACAACATGTTGCTCGCACACGCTTCTGCAACAATCTTAT 794 ||||||||||||||||||||||||||||||||| || || ||||||||||||| ||||| Sbjct 722 CTGAGCCTTACATTGCCGTACACAACATGTTGCTTGCGCATGCTTCTGCAACAAACTTAT 781 Query 795 ACAAGCAACAGTACAAGGTTC 815 |||||||||| |||||| ||| Sbjct 782 ACAAGCAACAATACAAG-TTC 801 Score = 512 bits (277), Expect = 3e-144 Identities = 323/345 (94%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 874 TACACAGTACAAGCAACATGGATCAGTAGGCATTAGCGTATACACATATGGAGCTGTCCC 933 |||| ||| ||||||||||||||||||||||||||||||||||||||| || | |||||| Sbjct 793 TACA-AGTTCAAGCAACATGGATCAGTAGGCATTAGCGTATACACATACGGTGTTGTCCC 851 Query 934 TTTAACTAACTCTGTGA-AGGATAAGCAGGCAACAGCTAGAGTGAATGACTTCTATATTG 992 |||||||||||||| || |||||||||||||||| |||||||| |||||||||||||||| Sbjct 852 TTTAACTAACTCTG-GAGAGGATAAGCAGGCAACTGCTAGAGTAAATGACTTCTATATTG 910 Query 993 GTTGGATTTTACATCCGTTGGTGTTTGGTGATTATCCTGAGACGATGAAGACCAATGTTG 1052 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 911 GTTGGATTTTACATCCGTTGGTGTTTGGCGATTATCCTGAGAGGATGAAGACCAATGTTG 970 Query 1053 GGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGAACAAGTTAAAGGCGCATTTGATT 1112 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 971 GGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGGACAAGTTAAGGGCGCATTTGATT 1030 Query 1113 TCGTTGGAGTGATAAATTACATGGCGCTTTATGTCAAAGACAACTCTTCCTCTCTGAAAC 1172 || |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 1031 TCTTTGGAGTGATAAATTACATGGCACTTTACGTCAAGGACAACTCTTCCTCTCTGAAAC 1090 Query 1173 CTAATCTCCAGGATTTCAACACAGATATAGCCGTGGAAATGACCT 1217 | ||| |||||||||||| |||||| || |||||||||||||||| Sbjct 1091 CAAATGTCCAGGATTTCACCACAGACATGGCCGTGGAAATGACCT 1135 Score = 440 bits (238), Expect = 2e-122 Identities = 305/335 (91%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 1340 ATGACTCCTCACAGCTCATCACTTGTGGACACAACAAGGGTGAAGTATCTGAGCTCGTAC 1399 |||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||| ||| Sbjct 1141 ATGACTCCTCACAGGTCATCACTTGAGGACACAACGAGGGTTAAGTATCTGAGCTCATAC 1200 Query 1400 ATTAAAGCAGTGCTTCATTCACTCAGCAGGAAAGGATCGGACGTAAAAGGGTATTTTCAG 1459 ||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||| Sbjct 1201 ATTGAAGCAGTGCTTCATTCA---ATCAGGAAAGGATCGAACGTAAAAGGGTATTTTCAG 1257 Query 1460 TGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGGTACGAGAGGAGCTTTGGATTATTG 1519 ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1258 TGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGCTACGAGAAGAGCTTTGGATTATTT 1317 Query 1520 TACGTGGACTTCAAGGATCCTTCTCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTAC 1579 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1318 TACGTGAACTTCAAGGATCCTTATCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTAC 1377 Query 1580 TCTTCCTTCCTCAAGGGAACACTGCACCATCCATCA-----T-A--TGCTTCGTCTTGAT 1631 ||||||||||||| |||||||||||||||||||||| | | |||||| ||||||| Sbjct 1378 TCTTCCTTCCTCATGGGAACACTGCACCATCCATCAGACCATCACATGCTTCATCTTGAT 1437 Query 1632 CATTTGA-T--TTCAATGGTTATAATGCTTAGTTG 1663 ||||||| | ||||||| |||||||||||||||| Sbjct 1438 CATTTGACTACTTCAATGTTTATAATGCTTAGTTG 1472 Score = 183 bits (99), Expect = 3e-45 Identities = 107/111 (96%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 154 CTTCCCTCCAGGCTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGC 213 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CTTCCCTCTAGACTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGC 122 Query 214 TGACGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCATGCCGG 264 ||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 123 TGAAGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCACGCCGG 173 Score = 99.0 bits (53), Expect = 1e-19 Identities = 62/66 (94%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 65 ATGAAGTTATTGAGCAATAGTCTAATGTTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCA 124 |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1 ATGAAGTTCTTGAGCAATAGTCTCATGCTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCA 60 Query 125 GT-TTC 129 || ||| Sbjct 61 GTCTTC 66 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67724455610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5