BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02930.1 Length=1049 Score E Sequences producing significant alignments: (Bits) Value Ahg470264 jgi|Araly1|470264|fgenesh2_kg.1__218__AT1G02930.1 1365 0.0 Ahg470263 jgi|Araly1|470263|fgenesh2_kg.1__217__AT1G02920.1 1033 0.0 > Ahg470264 jgi|Araly1|470264|fgenesh2_kg.1__218__AT1G02930.1 Length=918 Score = 1365 bits (739), Expect = 0.0 Identities = 866/926 (94%), Gaps = 14/926 (2%) Strand=Plus/Plus Query 35 TTTTATCCaaaaaa-caaaataaaaaaGAGTATTCAAGCTTGGTGGCGCCGTTTG-TTTT 92 |||||||||||||| ||||| |||||||||||||||| ||||||||||| |||| |||| Sbjct 1 TTTTATCCAAAAAATAAAAAT-AAAAAGAGTATTCAAGATTGGTGGCGCCTTTTGCTTTT 59 Query 93 TGGTTTATTCACTAAAGTTACTCTGTTTTAGTTGTATAAATACACACT-CCCATTTGTGT 151 | ||||||||||| ||||||||||| ||||||||||||||||||| | |||| |||||| Sbjct 60 T-GTTTATTCACT-AAGTTACTCTG-TTTAGTTGTATAAATACAC-TTCCCCA-TTGTGT 114 Query 152 ATTTCTTTTCATCAATCACAAAGATCTCTCTACTTCAATAAATCTCCACCTTAC-TTTAA 210 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||| ||||| Sbjct 115 ATTTCTTTTCATCAACCACAAAGATCTCTCTACTTCAACAAATCTCCACATTACTTTTAA 174 Query 211 GAACAAGAAAAACACAGTATTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTT 270 |||||| ||||| |||| ||||| ||||||||||||||||||||| || |||||||||| Sbjct 175 GAACAAAAAAAAAACAGCGTTAACTAATGGCAGGAATCAAAGTTTTTGGCCACCCAGCTT 234 Query 271 CCACAGCCACTAGAAGAGTTCTCATCGCTCTTCACGAGAAGAATGTCGACTTTGAATTCG 330 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 235 CCACAGCCACGAGAAGAGTTCTCATCGCTCTACACGAGAAGAATGTCGACTTTGAATTCG 294 Query 331 TTCATGTCGAGCTCAAAGATGGTGAACACAAGAAAGAGCCTTTCATCCTTCGCAACCCCT 390 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 295 TTCATGTCGAGCTCAAAGATGGTGAACACAAGAAAGAGCCTTACATCCTTCGCAACCCCT 354 Query 391 TTGGTAAAGTTCCAGCCTTTGAAGATGGAGACTTCAAGATTTTCGAATCAAGAGCAATTA 450 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 355 TTGGTAAAGTTCCAGCCTTTGAAGATGGAGACTTCAAGATTTTCGAGTCAAGAGCAATCA 414 Query 451 CTCAATACATAGCTCATGAATTCTCAGACAAAGGAAACAACCTTCTCTCAACTGGCAAGG 510 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 415 CTCAATACATAGCTCATGAATTCTCAGACAAAGGAAACAACCTTCTCTCAGCTGGCAAAG 474 Query 511 ACATGGCGATCATAGCCATGGGCATTGAAATTGAGTCGCATGAGTTTGACCCAGTTGGTT 570 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 475 ACATGGCGATCATAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGATCCAGTTGGTT 534 Query 571 CAAAGCTTGTTTGGGAGCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCG 630 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 535 CCAAGCTTGTTTGGGAGCAAGTCTTGAAGCCTTTGTATGGTATGACCACAGACAAAACCG 594 Query 631 TTGTTGAAGAAGAAGAGGCTAAGCTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTG 690 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 595 TTGTTGAAGAAGAAGAGGCTAAGTTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTG 654 Query 691 GTGAGTCCAAGTATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTG 750 ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 655 GTGAGTCTAAGTATTTGGCTGCTGATCACTTCACTTTGGTCGATCTTCACACTATCCCTG 714 Query 751 TGATTCAATACTTACTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTGA 810 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 715 TGATTCAGTACTTGCTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCA 774 Query 811 GTGCTTGGGTTGCTGACATCACTTCAAGGCCTTCTGCTCAGAAGGTTCTTTAAGTGAATC 870 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 775 GTGCTTGGGTTGCTGACATCACTTCTAGGCCTTCTGCTCAAAAGGTTCTTTAAGTGAATC 834 Query 871 TCAAACTATTT-A-TCGATCAGAAGATGTAATAAAAGTGGCGATGACCTAATTGCCCAAT 928 || |||| | | | | |||| ||||||||||||||||||||||||||||||| Sbjct 835 AGAAG--ATTTGAATAAAAGTGGCGATGAAATAAAAGTGGCGATGACCTAATTGCCCAAT 892 Query 929 TCTCATAAACTCtgtttttctttttg 954 |||||| ||||||||||||||||||| Sbjct 893 TCTCATCAACTCTGTTTTTCTTTTTG 918 > Ahg470263 jgi|Araly1|470263|fgenesh2_kg.1__217__AT1G02920.1 Length=831 Score = 1033 bits (559), Expect = 0.0 Identities = 668/718 (93%), Gaps = 17/718 (2%) Strand=Plus/Plus Query 229 ATTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAG 288 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 ATTAACAAATGGGAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAG 62 Query 289 TTCTCATCGCTCTTCACGAGAAGAATGTCGACTTTGAATTCGTTCATGTCGAGCTCAAAG 348 ||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||||| Sbjct 63 TTCTCATCGCTCTACACGAGAAGAATCTCGACTTCGAATTCGTTCATATCGAGCTCAAAG 122 Query 349 ATGGTGAACACAAGAAAGAGCCTTTCATCCTTCGCAACCCCTTTGGTAAAGTTCCAGCCT 408 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 123 ATGGTGAACACAAGAAAGAGCCTTTCATCTTTCGCAACCCTTTTGGTAAAGTTCCAGCCT 182 Query 409 TTGAAGATGGAGACTTCAAGATTTTCGAATCAAGAGCAATTACTCAATACATAGCTCATG 468 |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 183 TTGAAGATGGAGACTTGAAGCTTTTCGAATCAAGAGCAATTACTCAATACATAGCTCAT- 241 Query 469 AATT-CTCAGACAAAGGAAA-CAACCTTCTCTCAAC-TGG---CAAGGACATGGCGATCA 522 || ||||||||||||||| ||| ||| |||| | ||| ||||| ||| ||| ||| Sbjct 242 TTTTACTCAGACAAAGGAAACCAA-CTTGTCTC-CCTTGGCTCCAAGGCCATTGCGGTCA 299 Query 523 TAGCCATGGGCATTGAAATTGAGTCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTT 582 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 300 TAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTT 359 Query 583 GGGAGCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAAG 642 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 360 GGGAGCAAGTCTTTAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAGG 419 Query 643 AAGAGGCTAAGCTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTGGTGAGTCCAAGT 702 |||||| |||| |||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 420 AAGAGGTTAAGTTAGCCAAAGTTCTCGATGTTTACGAACACAGGCTTGGTGAGTCTAAGT 479 Query 703 ATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAATACT 762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAATACT 539 Query 763 TACTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTGAGTGCTTGGGTTG 822 | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 540 TGCTTGGTACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCAGTGCTTGGGTTG 599 Query 823 CTGACATCACTTCAAGGCCTTCTGCTCAGAAGGTTCTTTAAGTGAATCTCAAACTATTTA 882 |||| |||||||| |||||||||||||||||||||||||||| ||||| ||||| || | Sbjct 600 CTGATATCACTTCTAGGCCTTCTGCTCAGAAGGTTCTTTAAGCGAATCAAAAACTGTT-A 658 Query 883 TCGATCAGAAGAT-GTAATAAAAGTGGCGATGACCTAATTGCCC-AATTCTCATAAAC 938 |||||||||| | |||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 659 ---ATCAGAAGATTG-AATAAA-GTGGCGATGACCTCATTGCCCCAATTCTCATAAAC 711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39037867008 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5