BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03070.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470286 jgi|Araly1|470286|fgenesh2_kg.1__240__AT1G03070.1 1439 0.0
> Ahg470286 jgi|Araly1|470286|fgenesh2_kg.1__240__AT1G03070.1
Length=972
Score = 1439 bits (779), Expect = 0.0
Identities = 887/939 (94%), Gaps = 8/939 (1%)
Strand=Plus/Plus
Query 78 AAACAAATTCCGTT-TTTAGAATGTATAAGTGGAATCTTCCTTACCGAAAAGATGACGTG 136
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 40 AAACAAATTCCGTTACTTAGAATGTATAAGTGGAATCTTCCTTACCGGAAAGATGACGTG 99
Query 137 GAGACCGGCCGTGAAGGCGGTGAGAGATCTCTGTATCCGACTATGCTTGAGAGCCCCGAA 196
|||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 GAGACCGG-TG-GTA-GCGGTGAGAGATCTCTGTATCCGACTATGCTTGAGAGCCCCGAA 156
Query 197 CTCCGATGGGGTTTCATCAGAAAGGTATATTCCATAATCGCATTCCAGCTTTTAGCAACC 256
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 157 CTCCGATGGGGTTTCATCCGGAAGGTATATTCCATAATCGCATTCCAGCTCTTAGCAACC 216
Query 257 ATCGCCGTCGCCTCCACGGTGGTTTTTGTCCGTCCGATCGCCGTGTTCTTCGCCACTACT 316
||||||||||||||||||||||| || |||||||| || || |||||||||||||| |||
Sbjct 217 ATCGCCGTCGCCTCCACGGTGGTCTTCGTCCGTCCCATTGCGGTGTTCTTCGCCACCACT 276
Query 317 AGTGCCGGTCTCGCTCTCTGGATTGTCTTAATCATCACGCCTCTTATAGTAATGTGTCCT 376
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 AGTGCCGGTCTTGCTCTCTGGATTGTCTTAATCATCACGCCTCTTATAGTAATGTGTCCT 336
Query 377 TTGTACTATTACCACCAGAAACATCCAGTGAATTATTTGCTTCTAGGGATTTTCACGGTA 436
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 337 TTGTACTATTACCACCAGAAACATCCGGTGAATTACCTGCTTTTAGGGATTTTCACGGTG 396
Query 437 GCTTTGGCTTTCGCCGTCGGATTAACATGTGCTTTCACCAGCGGGAAAGTGATTCTTGAG 496
||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 397 GCTTTAGCTTTTGCCGTTGGATTAACATGTGCTTTCACCAGTGGGAAAGTGATTCTTGAG 456
Query 497 GCAGCGATTTTGACAACAGTAGTGGTGCTTTCCTTAACCGTCTACACCTTTTGGGCAGCA 556
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 457 GCAGCGATTTTGACAACAGTAGTGGTGCTTTCCTTAACCTTTTACACCTTTTGGGCAGCA 516
Query 557 AAGAAAGGATATGACTTTAACTTCCTCGGTCCATTCTTGTTTGGTGCTCTCATCGTTCTC 616
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 517 AAGAAAGGATATGACTTCAATTTCCTTGGTCCATTCTTGTTTGGTGCTCTCATCGTTCTC 576
Query 617 ATGGTCTTTGCCCTTATTCAGATTTTCTTCCCGTTGGGACGGATCTCAGTGATGATCTAT 676
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 577 ATGGTCTTTGCCCTTATTCAGATTTTCTTCCCGTTGGGTCGGATCTCAGTGATGATCTAT 636
Query 677 GGATGTTTGGCTGCGATAATATTCTGCGGGTACATAGTTTACGATACAGACAATCTCATC 736
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 637 GGATGTTTGGCTGCGATAATTTTCTGCGGGTACATAGTATACGATACAGACAATCTCATC 696
Query 737 AAACGTTACAGCTACGATGAGTATATTTGGGCAGCAGTTTCGCTCTACTTAGATATTATC 796
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 697 AAACGTTACAGTTACGATGAGTATATTTGGGCAGCAGTTTCCCTCTACTTAGATATTATC 756
Query 797 AACCTCTTCTTGGCTCTCCTTACCATTTTCAGAGCTGCCGAGTGAAGCTTCTTTACTCCT 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 AACCTCTTCTTGGCTCTCCTTACCATTTTCAGAGCTGCCGAGTGAAGCTTCTTTACTCCT 816
Query 857 TTTTTAAGTCTCGATCAGTGTTATTATCATGTTTTTAAAATGTGTAAATCTCTAATATTG 916
||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 817 TTT--AAGTCTCGATCAGTGT-ATTATCATATCCTTAAAATGTGTAAATCTCTAATATTG 873
Query 917 TTTGTTAACGAAACTTATTTTCTCTGTAGTATTCTCATGTACAAAA-CATAACCTGGCAG 975
||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 874 TTTGTTAACAAAACTCATTTTCTTTGTAGTATTCTCATGTACAAAAACATAACCTGGCAA 933
Query 976 TGTATCTTTTAAAGTAATCGAATAGTATTGAAATTTGCG 1014
||||| ||||||||||||||| |||||||| || |||||
Sbjct 934 TGTATTTTTTAAAGTAATCGAGTAGTATTGGAACTTGCG 972
Score = 75.0 bits (40), Expect = 1e-12
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand=Plus/Plus
Query 18 TTTCTCGCATTTTCTCGGGAAAATCGTAACGAAACAAACAAAATAACTTC 67
|||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 1 TTTCTCGCATTTTCTCGGGAAAATCGTAAC-AAACAAACAAAACAAATTC 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5