BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03080.1
Length=5736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470287 jgi|Araly1|470287|fgenesh2_kg.1__241__AT1G03080.1 8689 0.0
Ahg490287 jgi|Araly1|490287|fgenesh2_kg.6__3421__AT4G02710.1 1090 0.0
> Ahg470287 jgi|Araly1|470287|fgenesh2_kg.1__241__AT1G03080.1
Length=5301
Score = 8689 bits (4705), Expect = 0.0
Identities = 5106/5302 (96%), Gaps = 18/5302 (0%)
Strand=Plus/Plus
Query 352 ATGACTGCTGTTGTGAATGGTAACTCTAAACGCTATTCTTGGTGGTGGGATAGTCACATA 411
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTGCTCTTGTGAATGGTAACTCTAAACGCTATTCTTGGTGGTGGGATAGTCACATA 60
Query 412 AGCCCCAAGAACTCGAAATGGCTTCAGGAGAATCTTACAGATATGGATAGTAAAGTCAAG 471
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AGTCCCAAGAACTCCAAATGGCTTCAGGAGAATCTTACAGATATGGATAGCAAAGTCAAG 120
Query 472 CAAATGATCAAGGTTATTGAAGAAGATGCTGACTCTTTTGCTAGGCGAGCGGAAATGTAT 531
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 121 CAAATGATCAAGGTTATTGAAGAAGATGCAGACTCTTTTGCTAGGCGAGCAGAAATGTAT 180
Query 532 TACAAGAAGCGGCCTGAGCTTATGAAACTGGTTGAGGAGTTTTATCGAGCATATCGTGCT 591
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACAAAAAGCGGCCTGAGCTTATGAAACTGGTTGAGGAGTTTTATCGAGCATATCGTGCA 240
Query 592 TTGGCTGAAAGATACGATCATGCCACCGGTGTTATTCGTCATGCTCAGCAGACTATGGCT 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGGCTGAAAGATACGATCATGCCACCGGTGTTATTCGTCATGCTCAGCAGACTATGGCA 300
Query 652 GAAGCCTTCCCAAACCAAGACCCTATGATGTTTGGTGAGGAGTCACCTCTCGGTTCTTCC 711
||||||||||||||||||||||| |||||||||||||| ||||| ||||| | |||||||
Sbjct 301 GAAGCCTTCCCAAACCAAGACCCCATGATGTTTGGTGACGAGTCGCCTCTTGCTTCTTCC 360
Query 712 ACCGATGGTTTTGATCCACAAACGCCTGACAGTTATCCACCTATCCGAGCTCCTGTTTAC 771
||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 361 ACCGATGATTTTGATCCACAAACGCCTGAGAGTTATCCACCTATCCGAGCTCCAGTTTAC 420
Query 772 CCAGATGATTTACGAAAAGGTGCTTTTGGGATTTCTTCCTCTCATTTGAGTACCGTTAAG 831
|| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 421 CCCGATGATTTACGAAAAGGTACTTTGGGGATTTCTTCCTCTCATTTGAGTACCGTTAAG 480
Query 832 CGCAATATAGCCTTCATGGAAGACCCTCAGTCTGTGAGTAGCGGGAAAGGTTTTAAAACT 891
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 CGCAATATAGCCTTCATGGAAGACCCTCAGTCTGTGAGTAGTGGGAAAGGTTTTAAAACT 540
Query 892 GCAAAGGCAAGGAAAGGACTGAATTTCAATAATGTTGATGGAAAAGAAATAAATGCTAAG 951
|||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 541 GCAAAGGCAAGGAAGGGACTGAATTTCAATGATGTTGATGGAAAAGAAAGAAATGCTAAG 600
Query 952 GTTCTTTCAGAATCTGAACGCGCAAGCAAAGCTGAGGCTGAAATTGTGGCTTTAAAAGAT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTCTTTCAGAATCTGAACGCGCAAGCAAAGCTGAGGCTGAAATTGTGGCTTTAAAAGAT 660
Query 1012 GCTCTTTCTAAAGTGCAGGCTGAAAAGGAAGCTAGCTTAGCTCAGTTTGATCAGAATTTG 1071
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTCTCTCTAAAGTGCAGGCTGAAAAGGAAGCTAGCTTAGCTCAGTTTGATCAGAATTTG 720
Query 1072 GAGAAACTGTCTAATTTGGAGTCTGAGGTATCTCGTGCACAAGAGGACTCTAGGGTGCTT 1131
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 721 GAAAAACTGTCTAATTTGGAGTCTGAAGTATCTCGTGCACAAGAGGACTCTAGGGGGCTT 780
Query 1132 ATTGAACGAGCCACAAGAGCCGAAGCTGAGGTCGAAACGCTCAGAGAATCCCTCAGCAAA 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTGAACGAGCCACAAGAGCCGAAGCTGAGGTCGAAACGCTCAGAGAATCCCTCAGCAAA 840
Query 1192 GTAGAGGTTGAAAAGGAGTCCAGCCTTCTTCAGTATCAGCAATGTCTGCAAAACATAGCT 1251
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 841 GTAGAGGTTGAAAAGGGGTCCAGCTTTCTTCAGTATCAGCAATGTCTGCAAAACATAGCT 900
Query 1252 GATTTGGAGGATCGCATTTCTCTAGCCCAGAAGGAGGCTGGAGAAGTAGATGAGCGAGCC 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATTTGGAGGATCGCATTTCTCTAGCCCAGAAGGAGGCTGGAGAAGTAGATGAGCGAGCC 960
Query 1312 AACAGAGCCGAAGCTGAAACTCTAGCACTGAAGCAAAGCCTTGTTAGTTCCGAAACTGAC 1371
| ||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||||
Sbjct 961 AGCAGAGCCGAAGCTGAAATTCTATCACTGAAGCAAAGCCTTGTTAGATCCGATACTGAC 1020
Query 1372 AAGGAAGCTGCTCTTGTTCAATATCAACAATGCTTGAAAACCATATCTAACCTGGAAGAG 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAGGAAGCTGCTCTTGTTCAATATCAACAATGCTTGAAAACCATATCTAACCTGGAAGAG 1080
Query 1432 AGGTTGCACAAGGCTGAGGAAGATTCAAGGTTAACCAATCAGCGGGCAGAAAATGCTGAG 1491
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGGTTGCACAAGGCTGAGGAAGAGTCAAGGTTAACCAATCAGCGGGCAGAAAATGCTGAG 1140
Query 1492 GGTGAAGTTGAAAGCTTGAAGCAAAAGGTTTCCAAATTAATTGAAGAGAATGAAGCTTAC 1551
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1141 GGTGAAGTTGAAAGCTTGAAGCAAAAGGTTTCCAAATTAATTGAAGAAAACGAAGCTTAC 1200
Query 1552 GAACTCCAATACCAACAATGTCTGGACACAATTGCAGATTTAAAGCTCAAGCTGTTTCAT 1611
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAACTCCAATACCAACAGTGTCTGGACACAATTGCAGATTTAAAGCTCAAGCTGTTTCAT 1260
Query 1612 GCTCAAGAAGAAACTCAAAGGCTCAGCCGTGAAATAGAGGATGGAGTTGCTAAGTTAAAA 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTCAAGAAGAAACTCAAAGGCTCAGCCGTGAAATAGAGGATGGAGTTGCTAAGTTAAAA 1320
Query 1672 TTTGCAGAGGAAAAATGTGTTGTGCTTGAGAGATCAAATCAAAATCTTCACTCTGAACTG 1731
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1321 TTTGCAGAGGAAAAATGTGTTGTGCTTGAGAGATCAAATCAAAATCTACACTCTGAGCTG 1380
Query 1732 GATGGTCTACTAGAGAAACTGGGGAATCAAAGTCATGAGCTCACGGAGAAACAGAAAGAG 1791
||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1381 GATGGTCTATTGGAGAAACTGGGGAATCAAAGTCATGAGCTCACAGAGAAACAGAAAGAG 1440
Query 1792 TTGGGAAGATTGTGGACTTGTGTACAAGAAGAAAACTTGCGTTTTATGGAAGCTGAGACT 1851
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1441 ATGGGAAGATTGTGGACTTGTGTACAAGAAGAACACTTGCGCTTTATGGAAGCTGAGACC 1500
Query 1852 GCCTTTCAAACCCTACAACAGTTACACTCTCAGTCTCAGGAGGAACTAAGCACTTTGGCA 1911
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 GCTTTTCAAACCCTACAACAATTACACTCTCAGTCTCAGGAGGAGCTAAGCACTTTGGCA 1560
Query 1912 TTGGAACTGCAAAACAGGTCTCAAATCCTGAAAGATATGGAAGCCCGTAACAATGGTTTA 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TTGGAACTGCAAAACAGGTCTCAAATCCTGAAAGATATGGAAGCCCGTAACAATGGTTTA 1620
Query 1972 CAGGAGGAAGTTCAGGAAGCCAAAGACCAGAGCAAAAGCCTCAATGAGCTCAATCTCTCC 2031
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1621 CAGGAGGAAGTTCAGGAAGCCAAAGACCAGAGCAAAAGCCTCAATGAGCTCAATATCTCC 1680
Query 2032 TCGGCTGCATCAATTAAAAGTTTGCAGGAGGAGGTCTCAAAATTACGAGAGACAATACAG 2091
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TCAGCTGCATCAATTAAAAGTTTGCAGGAGGAGGTCTCAAAATTACGAGAGACAATACAG 1740
Query 2092 AAACTTGAGGCAGAAGTTGAACTAAGAGTGGACCAAAGAAATGCTTTGCAGCAAGAAATA 2151
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1741 AAACTTGAAGCAGAAGTTGAACTGAGAGTGGACCAAAGAAATGCTTTGCAGCAAGAAATA 1800
Query 2152 TACTGTCTTAAAGAGGAATTAAGTCAGATAGGGAAGAAACACCAGTCCATGGTAGAACAG 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TACTGTCTTAAAGAGGAATTAAGTCAGATAGGGAAGAAACACCAGTCCATGGTAGAACAG 1860
Query 2212 GTGGAATTGGTTGGTTTACATCCAGAAAGCTTTGGGTCTTCTGTCAAGGAGTTACAGGAG 2271
||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||||||
Sbjct 1861 GTGGAGTTGGTTGGTTTACATCAAGAAGGCTTTGCGTCTTCTGTCAAGGAGTTACAGGAG 1920
Query 2272 GAGAACTCAAAGCTAAAGGAAATCCGGGAAAGAGAAAGTATTGAAAAGACGGCCCTGATT 2331
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1921 GAGAACTCAAAGCTAAAGGAAATCAAGGAAAGAGAAAGTATTGAAAAGACGGCCCTGCTT 1980
Query 2332 GAGAAGTTAGAAATGATGGAAAAGCTTGTTCAGAAAAACCTTCTTCTGGAGAACTCCATA 2391
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1981 GAGAAGTTAGAAATGATGGAAAAGCTTGTTCAGAAAAACCTTCTTCTGGAAAATTCCATA 2040
Query 2392 TCAGATTTGAATGCTGAGCTGGAAACAATCAGAGGAAAGCTGAAAACATTGGAGGAAGCT 2451
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2041 TCAGATTTGAATGCTGAGCTGGAAACAATTAGAGGAAAGTTGAAAACATTGGAGGAAGCT 2100
Query 2452 TCTATGTCACTTGCTGAAGAGAAATCAGGCCTTCATTCTGAGAAGGACATGTTGATTTCC 2511
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2101 TCTATGTCACTTGCAGAAGAGAAATCAGGCCTTCATTCTGAGAAGGACATGTTGATATCC 2160
Query 2512 CGTCTGCAGAGTGCTACAGAAAACAGCAAGAAACTCTCTGAGGAAAACATGGTACTGGAG 2571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 CGTCTGCAGAGTGCTACAGAAAACAGCAAGAAACTCTCTGAGGAAAACATGGTACTGGAG 2220
Query 2572 AATTCTCTTTTTAATGCCAATGTAGAACTTGAAGAACTCAAGTCGAAATTGAAAAGCCTA 2631
|||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct 2221 AATTCTCTTTTTAATGCCAATGCAGAACTCGAAGAACTCAAGTCAAAATTGAAAAGCCTA 2280
Query 2632 GAAGAATCATGCCACCTGCTGAATGATGACAAGACCACTTTAACTAGTGAAAGAGAAAGC 2691
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2281 GAAGAATCATGCCACCTGTTGAATGATGACAAGTCCAGTTTAACTAGTGAAAGAGAAAGC 2340
Query 2692 CTACTCTCTCATATTGATACAATGAGAAAAAGAATTGAAGATCTGGAGAAAGAACATGCA 2751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2341 CTACTCTCTCATATTGATACAATGAGAAAAAGAATTGAAGATCTGGAGAAAGAACAGGCA 2400
Query 2752 GAATTAAAAGTGAAAGTTTTGGAATTAGCGACTGAGAGGGAGTCTTCTCTTCAGAAAATT 2811
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2401 GAATTAAAAGCGAAAGTTTTGGAATTAGCGACCGAGAGGGAGTCTTCTCTTCAGAAAATT 2460
Query 2812 GAAGAGTTGGGAGTGTCTTTAAATGCCAAGGACTGTGAGTATGCTAGTTTTGTGCAATTT 2871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 GAAGAGTTGGGAGTGTCTTTAAATGCCAAGGACTGTGAGTATGCTAGTTTTGTGCAATTC 2520
Query 2872 TCAGAGAGTCGGATGAATGGCATGGAATCAACGATCCATCACCTTCAAGATGAAAATCAA 2931
|| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2521 TCTGAGAGTCGGATGAATGCCATGGAATCAAAGATCCTTCACCTTCAAGATGAAAATCAA 2580
Query 2932 TGCCGGGTGAGAGAATATCAAGTGGAACTGGATCGAGCTCATGATGCTCACATTGAGATT 2991
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2581 TGCCGGGAGAGAGAATATCAAATGGAACTGGATCGAGCTCATGATGCTCACATTGAGATT 2640
Query 2992 ATTGTTCTGCAGAAATGTTTGCAGGACTGGCTTGAGAAGAGTTCCTCTTTGATTGCTGAG 3051
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2641 ATTGTTCTGCAGAAATGTTTGCAGGGCTGGCTTGAGAAGAGTTCCTCTTTGATTGCTGAG 2700
Query 3052 AATCAGGATATTAAAGAGGCTTCTAAACTGTTAGAGAAGCTAGTTTCTGAACTAGAA-GA 3110
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2701 AATCAGAATATCAAAGAGGCTTCTAAACTGTTAGAGAAGCTAGTTTCTGAACT-GAAAGA 2759
Query 3111 GGAAAATATTGGGAAACAAGTGCAGATTGACTCCTCGATTAACTGCATTAAAATACTGAG 3170
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2760 GGAAAATATTGGGAAACAAGTGCATATTGACTCCTCGATTAACTGCATTAAAATACTGAG 2819
Query 3171 AACAGGGATCTACCAGGTATTGATGAAGCTTGAAATAATTCCAGGTATAGGTTCCGGTGA 3230
||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2820 AACGGGGATCTACCAAGTATTGAAGAAGCTTGAAATAATTCCAGGTATAGATTCCGGTGA 2879
Query 3231 TGAGAACTCGCGAGACCAGAGAAATATGCATGATATATTGAATAGACTTGAAGACATGCA 3290
|||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||
Sbjct 2880 TGAGAACTCGCGAGACCAGAAAAATATGCATGACATCTTGAATAGACTTGATGACATGCA 2939
Query 3291 AACTATGCTTTTGAGCATTCGGGATGAAAACCAGCACTCTGCCATAGAGAACCTCGTCCT 3350
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2940 AACTATGCTTTTGAGGATTCGGGATGAAAACCAGCACTCTGCCATTGAGAACCTCGTCCT 2999
Query 3351 TATTGAATTTCTTCGGCAACTTAAATCAGAAGCTGTAGGTATTGAAACAGAGAAGAAAAT 3410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3000 TATTGAATTTCTTCGGCAACTTAAATCAGAAGCTGTAGGTATTGAAACAGAGAAGAAATT 3059
Query 3411 CCTTGAGGAAGAACTTGAATCTCAGTGTCAGCAGCTCTCGTTTTCGCGGGATGAGACCCA 3470
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 3060 CCTTGAGGAAGAACTTGAATCTCAGTGTCAGCAGCTCTTGTTTTCGCAGGATGAGACTCA 3119
Query 3471 GAAACTTATCTTCGTGAACGGAGAATTGACCACAAAAGTTAATCAAGGAGTCAACAGAGA 3530
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3120 GAAACTTATCTTCGTGAACGGAGAATTGACCACAAAAGTTAATGAAGGAGTCAACAGAGA 3179
Query 3531 AAAGGTTTTGATGGTGGAAATTGAGGATTTTCACAGGCAGGTGTTGCAGTTACGAGATGA 3590
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3180 AAAAGTTTTGATGGTGGAAATTGAGGATTTGCACAGGCAGGTGTTGCAGTTACGAGATGA 3239
Query 3591 CTACACCATTCTACAGGGAGATAATAACAAAACGTTGGATGAGAAAGCATACTTGACAAA 3650
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3240 CTACACCATTTTGCAGGGAGATAATTACAAAACGTTGGATGAGAAAGCATACTTGACAAA 3299
Query 3651 GTCAACATTGCAGTTGGAGGAGGAGAAATGTAAACTAGAAGATGATATCTCTTTGCTTCT 3710
|| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 3300 GTTGACATTGCAGTTGGAGGAGGAGAAACATAAACTAGAAGAGGATATCTCTTTGCTTCT 3359
Query 3711 GTCGGAGACTATATATCAAAGCAATCTCATCATTCTGTTGGAGGATGTCATCTTGGAAAA 3770
||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||
Sbjct 3360 GTCGGAGACTATATATCAAAGCAGTCTCATCATTCTATTGGAGGATGTCGTCTTGGAAAA 3419
Query 3771 GCTTTCAGGAGCAATGAAACTAAACGAGGATCTAGACAGACTCAGTATTGTCAAGTGTAA 3830
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 3420 ACTTTCAGGAGCAATGAAACTAAACGAGGATTTAGACAGACTCTGTATTGTCAAGTGTAA 3479
Query 3831 GCTTGAGGAAGAGGTAAGAGAGCTTGGTGATAAGTTAAAATCTGCAGACATTGCGAACTT 3890
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 3480 GCTTGAGGAAGAGGTAAGGGAGGTTGGTGATAAGTTAAAATCTGCAGACATTGCGAACTT 3539
Query 3891 TCAGCTTCAAGTTGTGCTAGAGAAATCGAATGCCGAACTACTCTCTGCCAGATCAGCCAA 3950
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3540 TCAGCTTCAAGGTGTGCTAGACAAATCGAATGCCGAACTACTCTCTGCCAGATCAGCCAA 3599
Query 3951 TGTTCATTTGGAACATGAAATAGCTAATGTGAAGG-T---T-----CAGAAGGAGAAAGA 4001
||||||||||||||||||||| ||||||||||||| | | |||||||||| |||
Sbjct 3600 TGTTCATTTGGAACATGAAATTGCTAATGTGAAGGATCAGTTGGATCAGAAGGAGAGAGA 3659
Query 4002 GCTTTTAGAAGCAATGCTGATGATCTCCATCATGCAAAATGAAAAATCTGAATTATCTAA 4061
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| ||
Sbjct 3660 GCTTTTAGAAGCAATGCTGATGATCTCCACCATGCAGAATGAAAAATTTGAATTATCAAA 3719
Query 4062 GGCAGTGGAGGGTTTAGAATGTAGATACAAGGAAGCTAAAGCGATAGAAGAGGATAGGGA 4121
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 3720 GGCAGTGGAGGGTTTAGAATGTAGATACAAGGAAGCTAAAGCAATAGAAGAGGATAAGGA 3779
Query 4122 TAAGCAGGTCTTGAGACTCCGTGGAGATTACGATGAGCAGGTTAAGAAGAATAGTCATTC 4181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3780 TAAGCAGGTCTTGAGACTCCGTGGAGATTACGATGAGCAGGTTAAGAAGAATAGTCATTC 3839
Query 4182 GAACGAAGCTAATCTGAAATTGGAAGCTGACTTGATGAACTTACTCATGGAACTCGAAGA 4241
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3840 GAATGAAGCTAATCTGAAATTGGAAGCTGACTTGATGAACTTACTCATGGAACTCGAAGA 3899
Query 4242 AATCAAAGTGGAGAAGGAAAATCTGAACCAGGAGCTTTTTACAGAAAGGAATGAGATTGA 4301
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3900 AATCAAAGGGGAGAAGGAAAATCTGAACCAGGAGCTTTTTACAGAAAGGAATGAGAATGA 3959
Query 4302 ACTATGGGAGTCTCAGTCTGCAACATTGTTTGGAGAGTTGCAGATTTCGGCTGTTCATGA 4361
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3960 ACTATGGGAGTCTCAATCTGCAACATTGTTTGGAGAGTTGCAGATTTCGGCTGTTCATGA 4019
Query 4362 AACATTGCTTGAAGGGTTGACCAATGAGCTGGTCGAAGCATGTAAGAACCTTGAAAGCAG 4421
|||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 4020 AACATTGCTTGAAGGGTTGACCCATGAGCTGGCCGAAGCCTGTAAGAACCTTGAAAGCAG 4079
Query 4422 AAGCACGTTAAAAGACAGGGAGATTGAGCAGCTTAAAGGAAGAGTGAACAACTTAGAAGA 4481
|||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 4080 AAGCACATTAAAAGACAGAGAGATTGAGCAGCTTAAAGGAAGACTGAACAACTTAGAAGA 4139
Query 4482 TGCGAACAAAGGACAAAACGATCTTATGTGCAAATACGCCCAAGCTATTTTCCTGTTGAA 4541
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4140 TGCGAACAAAGGACAAAATGATCTTATGTGCAAATACGCCCAAGCTATTTTCCTGTTGAA 4199
Query 4542 GGAAAGCATACAATCTCTGGAAAAACATGCAATGCTTCACGAATTCGAGAATGGACCAGC 4601
||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct 4200 AGAAAGCATACAATCTCTGGAAAAACATGCCATGCCTCACGAATTCGAGAATGAACCAGC 4259
Query 4602 CACAGAAACTGCTTCATTGGTGGATAACAGCGATGGCTTCTTAGAGATACAAGAATTGCA 4661
|||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 4260 CACAGACACTGCTTCATTGGTGGATAACAACGATAGCTTCTTAGAGATACAAGAATTGCG 4319
Query 4662 TTTGAGAATTAAAGCTATTGAGGAGGCAATAACCAAAAAGCTTGCAATGGAAGAACTAAA 4721
||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct 4320 TTTGAGAATCAAAGCTATTGAGGAGGCAGTAACCAAAAAGCTTGCAATTGAAGAATTAAA 4379
Query 4722 AACTTCCTCTGCCCGAAGAAGCAGAAGGAGAAATGGAAGCCTCCGGAAACAGAACCATGA 4781
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 4380 AACTTCCTCTGCCCGAAGAAGCAGAAGAAGAAGTGGAAGCCTGCGGAAACAGAACCATGA 4439
Query 4782 AATCTACTCCGAGGAAACCGAGATGATCACAAAAGATATCGTACTCGATCAGGTTTCTGA 4841
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4440 AATCCACTCCGAGGAAACCGAGATGATCACAAAAGATATCGTACTCGACCAGGTTTCTGA 4499
Query 4842 TTGCTCATCATATGGGATAAGTACGAGAGACATTTTGAAGATAGAAGATGATCACAGTTT 4901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4500 TTGCTCATCATATGGGATAAGTACGAGAGACATTTTGAAGATAGAAGATGATCACAGTTT 4559
Query 4902 AGAGGCAAAGTCACAAAATCCTCCGAAAGGTAAATCCTTGTCTGAAGAGTCATTGGTTGT 4961
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4560 AGAGGTGAAGTCACAAAACCCTCCGAAAGGTAAATCCTTGTCTGAAGAGTCATTGGTTGT 4619
Query 4962 GGACAAACTAGAGATCTCCGATAGATTCACGGATCCAAACAAAGATGCAAACAAGAGGAA 5021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4620 GGACAAACTAGAGATCTCCGATAGATTCACGGATCCAAACAAAGATGCAAACAAGAGGAA 4679
Query 5022 AGTTCTCGAGAGACTTAATTCAGATTTACAGAAGCTCTCAAATCTTCATGTCGCCGTTGA 5081
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 4680 AGTTCTCGAGAGACTTGATTCAGATTTACAGAAGCTCGCAAATCTTCATGTCGCCGTTGA 4739
Query 5082 AGATTTGAAAATCAAAGTGGAGACAGAGGAGAAAGACGAGAAAGGAAAAGAAAACGAGTA 5141
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4740 AGATTTGAAAAGCAAAGTGGAGACAGAGGAGCAAGACGAGAAAGGAAAAGAAAACGAGTA 4799
Query 5142 CGAGACGATCAAGGGACAGATCAACGAAGCTGAAGAAGCATTAGAGAAACTGTTAAGCAT 5201
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 4800 CGAGACGATCAAGGGACAGATCAATGAAGCTGAAGAAGCATTAGAGAAACTATTAAGCAT 4859
Query 5202 CAACAGGAAACTGGTGACGAAAGTTCAAAATGGATTTGAAAGATCAGATGGAAGCAAATC 5261
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 4860 CAACAGGAAACTGGTGACGAAAGTCCAAAACGGATTTGAGAGATCAGATGGAAGCAAATC 4919
Query 5262 ATCAATGGATCTTGATGAGAATGAGAGTAGCAGAAGGAGGAGGATATCAGAACAGGCGAG 5321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4920 GTCAATGGATCTTGATGAGAATGAGAGTAGCAGAAGGAGGAGGATATCAGAACAGGCGAG 4979
Query 5322 AAGAGGATCAGAGAAGATTGGTAGGTTACAGTTGGAGATACAGAGATTACAGTTTCTGTT 5381
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4980 AAGAGGATCAGAGAAGATTGGTAGGTTACAGTTGGAGATACAGAGATTGCAGTTTCTGTT 5039
Query 5382 ACTGAAACTGGAAGGAGATAGAGAGGATCGAGCAAAAGCAAAGATATCGGATAGCAAAAC 5441
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5040 ACTAAAATTGGAAGGAGATAGAGAGGATCGAGCAAAAGCAAAGATATCGGATAGCAAAAC 5099
Query 5442 GAGGATTCTTCTTCGGGATTATATCTATAGCGGAGTGAGAGGTGAGCGACGAAAGAGGAT 5501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5100 GAGGATTCTTCTTCGGGATTATATCTATAGCGGAGTGAGAGGTGAGCGACGAAAGAGGAT 5159
Query 5502 TAAAAAGCGGTTTGCGTTTTGTGGGTGCGTGCAACCGCCTCCATCTCCTTGATAGTTAGA 5561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5160 AAAAAAGCGGTTTGCGTTTTGTGGGTGCGTGCAACCGCCTCCATCTCCTTGATAGTTAGA 5219
Query 5562 ACT--G---T-T-GTTGCAAGTAAGCTAAATAATGTTCATGTGAATGGAAACGTATTGAA 5614
||| | | | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 5220 ACTTAGAACTGTTGTTGCAAGTAAGCTAAATAATGTTCATGTGAATGGAAACGAATTGAA 5279
Query 5615 GTTTGATATGAAAGAGAAACAC 5636
||||||||||||||||||||||
Sbjct 5280 GTTTGATATGAAAGAGAAACAC 5301
> Ahg490287 jgi|Araly1|490287|fgenesh2_kg.6__3421__AT4G02710.1
Length=3363
Score = 1090 bits (590), Expect = 0.0
Identities = 1351/1705 (79%), Gaps = 106/1705 (6%)
Strand=Plus/Plus
Query 371 GTAACTCTAAACG---CTATTCTTGGTGGTGGGATAGTCAC-ATAAGCCCCAAGAACTCG 426
||||||| ||||| ||||| |||||||||||||||||| || | ||||||||| ||
Sbjct 20 GTAACTCGAAACGTATGTATTCATGGTGGTGGGATAGTCACAAT-ACCCCCAAGAATTCT 78
Query 427 AAATGGCTTCAGGAGAATCTTACAGATATGGATAGTAAAGTCAAGCAAATGATCAAGGTT 486
||||||||||||||||||||| |||||||||||| ||| || ||||| ||||| ||||||
Sbjct 79 AAATGGCTTCAGGAGAATCTTGCAGATATGGATAATAATGTGAAGCAGATGATTAAGGTT 138
Query 487 ATTGAAGAAGATGCTGACTCTTTTGCTAGGCGAGCGGAAATGTATTACAAG-AAGCGGCC 545
||||||||||||| || || ||||||||| |||| || ||||||||| | || || ||
Sbjct 139 CTTGAAGAAGATGCAGATTCCTTTGCTAGGAGAGCAGAGATGTATTAC-CGTAAACGTCC 197
Query 546 TGAGCTTATGAAACTGGTTGAGGAGTTTTATCGAGCATATCGTGCTTTGGCTGAAAGATA 605
||||||||||||| | ||||| ||||| || || |||||||| ||||| ||||| |||||
Sbjct 198 TGAGCTTATGAAATTAGTTGAAGAGTTCTACCGTGCATATCGCGCTTTAGCTGAGAGATA 257
Query 606 CGATCATGCCACCGGTGTTATTCGTC-ATGCTCA-GCAGACTATGGCTGAAGCCTTCCCA 663
||||||| || || | || || | | ||||| | ||||||| || ||||| ||||||
Sbjct 258 TAATCATGCAACGGGCG-TAATCCACAAGGCTCATG-AGACTATAGCAGAAGCGTTCCCA 315
Query 664 AACCAAG-ACCCTATGATGTTTGGTGAGGAGTCACCTCTCGGTTCTTCCACCGATGGTTT 722
||||||| || | |||| || ||||| ||||||| | | ||| ||| || ||| | |
Sbjct 316 AACCAAGTTCCGT-TGATATTCGGTGATGAGTCACATGTTGGTGCTTTGACAAATGATGT 374
Query 723 TGATCCACAAACGCCTGACAGTTA--TCCACCTATCCGAGCTCCTGTTTACCCAGATGAT 780
|||||||||||| || || | || ||| ||| | ||||||| | | ||||||||||
Sbjct 375 TGATCCACAAACACCGGATA--TACTTCCTCCTTTTCGAGCTCGGGGTAACCCAGATGAG 432
Query 781 TTACGAAAAGGTGCTTTTGGGATT-TCTTCCTCTCAT-TTGAGT-ACCGTTAAG-CGCAA 836
|| | ||||| || ||||||| || |||| |||||| | | | | || ||| | ||
Sbjct 433 TTGCAAAAAGATGGTTTTGGG-TTCTCTTTATCTCATGTCCA-TGA-TGTCAAGAAG-AA 488
Query 837 TATAGCCTTCATG-GAAGACCCTCAGTCTGTGAGTAGCGGGAAAGGTTTTAAAACTGCAA 895
||||| || | | ||||| |||| || ||||||| || || ||| || |
Sbjct 489 TATAGATTTTA-GTGAAGAACCTCCGTTTGTGAGT------AATGG----CAAA--GC-A 534
Query 896 AGGCAAGGAAAGGACTGAATTTCAATAATGTTGATGGAAAAGAAATAAATG--CT-AAGG 952
| | || | |||||| ||||||||| ||| |||||||||| || ||||| | ||||
Sbjct 535 A-G-AA-G--AGGACTCAATTTCAATGATGGGGATGGAAAAGGAAGAAATGATTTCAAGG 589
Query 953 ------TTCTTTCAGAATCTGAACGCGCAAGCAAAGCTGAGGCTGAAATTGTGGCTTTAA 1006
|||| |||| ||||||||| || ||||||||||| ||||| ||||||||||||
Sbjct 590 CTCATATTCTATCAGGATCTGAACGGGCTAGCAAAGCTGAAGCTGAGGTTGTGGCTTTAA 649
Query 1007 AAGA-TGCTCTTTCTAAAG-TGCAGGCTGAAAAGGAAGCTAGCTTAGCTCAGTTTGATCA 1064
|||| | | |||||| ||| |||||| |||||| |||||||||||||| |||||||| |
Sbjct 650 AAGACT-CCCTTTCT-AAGATGCAGGTTGAAAAAGAAGCTAGCTTAGCACAGTTTGAGAA 707
Query 1065 GAATTTGGAGAAACTGTCTAATTTGGAGTCTGAGGTATCTCGTGCACAAGAGGACTCTAG 1124
||||||||||| |||||| ||| | || ||||| ||||||||||||||||| ||||| ||
Sbjct 708 GAATTTGGAGAGACTGTCAAATCTAGAATCTGAAGTATCTCGTGCACAAGAAGACTCAAG 767
Query 1125 GGTG-CTTATTGAAC-GAGCCACAAGAGCCGAAGCTGAGGTCGAAACGCTCAGAGAATCC 1182
|| | |||| | || ||||| |||| || ||||||||| || |||||||||||||| ||
Sbjct 768 GG-GACTTAACG-ACAGAGCCGCAAGTGCAGAAGCTGAGATCCAAACGCTCAGAGAAACC 825
Query 1183 CTC-AGCAAAGTAGAGGT-TGAAAAGGAGTCCAGCCTTCTTCAGTATCAGCAATGTC-TG 1239
||| | |||| |||| || ||||||||| ||||||||||||| |||| | |||| | ||
Sbjct 826 CTCTA-CAAACTAGA-GTCTGAAAAGGAATCCAGCCTTCTTCGGTATGAAAAATG-CTTG 882
Query 1240 CAAAACATAGCTGATTTGGAGGATCGCA-TTTCTCTAGCCCAGAAGGAGGCTGGAGAAGT 1298
||||| ||||| ||||||| ||| | | | ||| ||||||| ||||| ||||||||| |
Sbjct 883 CAAAAGGTAGCTAATTTGGAAGAT-GGACTCTCTGTAGCCCATAAGGAAGCTGGAGAAAT 941
Query 1299 AGATGAGCGAGCCAACAGAGCCGAAGCTGAAACTCTAGCACTGAAGCAAAGCCTTGTTAG 1358
| |||||||||||| || ||| ||||||||| |||| || ||||||| ||||||| ||
Sbjct 942 AAATGAGCGAGCCAGCAAAGCTGAAGCTGAAGCTCTCGCTTTGAAGCAGAGCCTTGCTAA 1001
Query 1359 TTCCGAAACTGACAAGGAAGCTGCTCTTGTTCAATATCAA-CAATGCTTGAAAACCATAT 1417
| |||||||||||||||||||||||||||||||| || ||||||||||| || || |
Sbjct 1002 AGCAGAAACTGACAAGGAAGCTGCTCTTGTTCAATA-CAGGCAATGCTTGAATACGATTT 1060
Query 1418 CTAACCTGGAAGAGAGGTTGCAC-AAGGCTGAGGAAGATTCAAGG-TTAACCAATCAGCG 1475
||||||| |||||||| || | ||||||||||||||| ||||| ||| | ||| |||
Sbjct 1061 CTAACCTAGAAGAGAGACTG-AGGAAGGCTGAGGAAGATGCAAGGCTTATC-AATGAGCA 1118
Query 1476 GGCAGAAAATGCTGAGGGT-GAAGTTGAAAGCTTGAAGCAAAAGGTTTCCAAATTAATTG 1534
||| ||||| |||| || | |||||||||| ||||||||||| ||| || ||||| ||
Sbjct 1119 GGCTGAAAAGGCTG-GGATAGAAGTTGAAAACTTGAAGCAAACGGTCTCGAAATTGATC- 1176
Query 1535 AAG-AGAATGAAGCTTAC-GAACTCCAATACCAACAATGTCTGGACACAATTGCAGATTT 1592
||| | || ||||||| | ||||| || | |||||| || || | | ||||| ||| |
Sbjct 1177 AAGGATAAGGAAGCTT-CTGAACTTCAGTTCCAACAGTGCCTAAATATTATTGCGGATCT 1235
Query 1593 AAA-GCTCAAGCTGTTTCATGCTCAAGAAGAAACTCAAAGGCTCAGCCGTGAAATAGAGG 1651
||| | | || || || |||||||||||||| ||||| || |||| |||||||||||
Sbjct 1236 AAAAG-TAAAACTACACCACGCTCAAGAAGAAACACAAAGTCTTAGCCTTGAAATAGAGG 1294
Query 1652 ATGGAGTTGCTAAGTTAAAATTTGCAGAGGAAAAATGTGTTGTGCTTGAGAGATCAAATC 1711
||||||||||||||||||| ||| | ||||| |||||| |||||||||||||||||||||
Sbjct 1295 ATGGAGTTGCTAAGTTAAAGTTTTCTGAGGAGAAATGTCTTGTGCTTGAGAGATCAAATC 1354
Query 1712 AAAATCTTCACTCTGAACTGGATGGTCTACTAG-AGAAACTGGGGAATCAAAGTCATGA- 1769
| ||||| |||||||| |||||| |||| || | |||||||||||||||||||||| ||
Sbjct 1355 AGAATCTCCACTCTGAGCTGGATAGTCT-CTTGGAGAAACTGGGGAATCAAAGTCA-GAA 1412
Query 1770 GCTCACGGAGAAACAGAA-AGAGTTGGG-AAGATTGTGGACTTGTGTACAAGAAGAAAAC 1827
| |||| ||||| || || |||| ||| || |||||||| ||||||||||||||| |
Sbjct 1413 GTTCACAGAGAAGCA-AACAGAGCTGGTCAA-ATTGTGGAGTTGTGTACAAGAAGAGCAT 1470
Query 1828 TTGCGTTTT-ATGGAAGCTGAGACTGCCTTTCAAACCCTACAACAGTTACACTCTCAGTC 1886
|||||||| | | |||||||||| || |||||||||||||| || || |||||||||||
Sbjct 1471 TTGCGTTTCCAAG-AAGCTGAGACCGCATTTCAAACCCTACAGCAATTGCACTCTCAGTC 1529
Query 1887 TCA-GGAGGAACT-AAGCACTTTGGCAT-TGGAACTGCAAAACAGGTCTCAAATCCTGAA 1943
||| || ||| || || | |||||| | ||||||| |||| ||||||||| ||| ||||
Sbjct 1530 TCAAGG-GGAGCTCAATAA-TTTGGC-TGTGGAACTTCAAACCAGGTCTCAGATCATGAA 1586
Query 1944 AGATATGGA-AGCCCGTAACAATG-GTTTACAGGAGGAAGTTCAGGAAGCCAAAGACC-A 2000
||| ||||| | || | |||| || ||| || |||||| || || ||| ||| || |
Sbjct 1587 AGACATGGAGAACC-GAAACAGTGAGTTG-CATGAGGAAATTGAGCAAGTCAA-GATTGA 1643
Query 2001 GAGCAAAAGCCTCAATGAGCTCAAT 2025
|| |||| | |||||||||||||||
Sbjct 1644 GAACAAAGGTCTCAATGAGCTCAAT 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 217270684257
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5