BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03130.1 Length=892 Score E Sequences producing significant alignments: (Bits) Value Ahg918978 jgi|Araly1|918978|scaffold_100259.1 1109 0.0 > Ahg918978 jgi|Araly1|918978|scaffold_100259.1 Length=661 Score = 1109 bits (600), Expect = 0.0 Identities = 635/651 (98%), Gaps = 5/651 (1%) Strand=Plus/Plus Query 43 AAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGCCATAACAACCA 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10 AAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGCCATAACAACCA 69 Query 103 CTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCATCAAGCCACCGTCCCAAGTCTCTCT 162 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 70 CTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCAACAAGCCACCGTCCCAAGTCTCTCT 129 Query 163 CCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCTCCTCTGCTGCCCCAGCCG 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 CCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCTCCTCTGCTGCCCCAGCCG 189 Query 223 TG--A-AAGAAGCTCCAGTTGGATTCACTCCCCCGCAGCTAGACCCAAACACACCATCAC 279 || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 TGAAAGAAGAAGCTCCGGTTGGATTCACTCCCCCGCAGCTAGACCCAAACACACCATCAC 249 Query 280 CAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGCACAAGTAGAGGAATTTTACG 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 CAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGCACAAGTAGAGGAATTTTACG 309 Query 340 TGATCACATGGAACTCACCGAAAGAACAAATCTTTGAGATGCCAACAGGAGGAGCTGCGA 399 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 310 TCATCACATGGAACTCACCGAAGGAACAAATCTTTGAGATGCCAACAGGAGGAGCTGCGA 369 Query 400 TAATGAGAGAAGGACCGAATCTATTGAAACTGGCGAGGAAAGAACAGTGTTTGGCTTTAG 459 |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| Sbjct 370 TAATGAGAGAAGGACCGAATCTGTTGAAACTAGCGAGGAAAGAACAGTGCTTGGCTTTAG 429 Query 460 GTACGAGGTTGAGGTC-AAAGTACAAGATCACTTACCAGTTTTACAGAGTGTTCCCTAAC 518 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 430 GTACGAGGTTGAGGTCTAAA-TACAAGATCACTTACCAGTTTTACAGAGTGTTCCCTAAC 488 Query 519 GGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTATCCAGAGAAAGCGAATCCAGGA 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 GGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTATCCAGAGAAAGCGAATCCAGGA 548 Query 579 AGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAAAATGTTAGTCCCATTGAGGTT 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 AGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAAAATGTTAGTCCCATTGAGGTT 608 Query 639 AAATTCACTGGGAAACAATCTTATGATTTGTAAGATTTTAATTCGTATTTT 689 ||||||||||| |||||||||||||||||||||| ||| | |||||||||| Sbjct 609 AAATTCACTGGAAAACAATCTTATGATTTGTAAGGTTTGATTTCGTATTTT 659 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33052569039 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5