BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03140.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918979 jgi|Araly1|918979|scaffold_100260.1 2211 0.0
Ahg473339 jgi|Araly1|473339|fgenesh2_kg.1__3293__AT1G54590.1 752 0.0
> Ahg918979 jgi|Araly1|918979|scaffold_100260.1
Length=1295
Score = 2211 bits (1197), Expect = 0.0
Identities = 1270/1304 (97%), Gaps = 9/1304 (1%)
Strand=Plus/Plus
Query 61 CGATTGAAGAAACCTTTCCGATGGATCTGCTCAGGGAAGAGATTCTGAAGAAACGTAAGA 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1 CGATTGAAGAAACCTTTCCGATGGATCTGCTCAGAGAAGAGATTCTGAAGAAACGGAAGA 60
Query 121 GTCTAGCTGAGGAATCTGGTGGTAAGAAGTTCTTCAAGCGGTCTGAGATCGAGCAGAAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCTAGCTGAGGAATCTGGTGGTAAGAAGTTCTTCAAGCGGTCTGAGATCGAGCAGAAGA 120
Query 181 AAATCCAGAAGCTTCGAGAGGAAGAACGACGCGAGCACGAGCTTAAGGCTCAGCGGAGAG 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATCCAGAAGCTTCGAGAAGAAGAACGACGCGAGCACGAGCTTAAGGCTCAGCGGAGA- 179
Query 241 CCGCCGCCGCCGCTTCCGGTGGAGATGGAAAATCATCCGGCTCTGCTCCTGGTTCTTCTA 300
||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 180 --------GCCGCTTCCGGTGGAGATGGAAAATTATCCGGTTCTGCTCCTGGTTCTTCTA 231
Query 301 ACGCAGCTACGTCTGCGTCTTCCAAATCCTCTGCATCGGACGCTGCTGCTATCGCCGATT 360
||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 232 ACGCATCTGCATCTGCGTCTTCCAAATCCTCCGCATCGGACGCTGCTGCTATCGCCGATT 291
Query 361 CAAAAGCCCTAACCGACGAAAACCTAATTCTCCCGAGGCAGGAAGTGATTCGTCGTTTGA 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CAAAATCCCTAACCGACGAAAACCTAATTCTCCCGAGGCAGGAAGTGATTCGTCGTTTGA 351
Query 421 GATTCCTTAAGCAGCCGATGACTCTCTTCGGAGAAGATGATCAATCGCGGCTCGATCGAC 480
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 352 GATTCCTTAAGCAGCCGATGACTCTCTTCGGAGAAGACGATCAAGCGCGGCTCGATCGAC 411
Query 481 TCAAGTACGTTTTGAAGGAAGGATTGTTCGAGGTTGATAGTGATATGACTGAAGGACAGA 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 412 TCAAGTACGTTTTGAAGGAAGGATTGTTCGAGGTTGATAGCGATATGACTGAAGGACAGA 471
Query 541 CGAATGATTTCTTGCGTGACATCGCAGAGCTTaagaagaggcagaagagtggtatgatgg 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 472 CGAACGATTTCTTGCGTGACATCGCAGAGCTTAAGAAGAGGCAGAAGAGTGGTATCATGG 531
Query 601 gagataggaagaggaagagtagagatgagagaggaagagacgaaggtgatagaggtgaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GAGATAGGAAGAGGAAGAGTAGAGATGAGAGAGGAAGAGACGAAGGTGATAGAGGTGAAA 591
Query 661 caagggaagaTGAACTTAGTGGTGGTGAATCGAGTGATGTTGATGCTGATAAAGATATGA 720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CGAGGGAAGATGAACTTAGTGGTGGTGAATCGAGTGATGTTGATGCTGATAAAGATATGA 651
Query 721 AACGTTTGAAAGCTAACTTTGAGGATCTATGCGATGAGGATAAGATCCTTGTGTTTTATA 780
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 652 AGCGTTTGAAAGCTAACTTTGAGGATCTATGCGATGAGGATAAGATCCTTGTGTTTTACA 711
Query 781 AGAAGCTGTTGATTGAATGGAAACAGGAGCTTGATGCGATGGAGAACACTGAGAGGAGAA 840
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 712 AGAAGCTATTGATTGAATGGAAGCAGGAGCTTGATGCAATGGAGAACACTGAGAGGAGAA 771
Query 841 CTGCAAAAGGGAAACAGATGGTAGCCACTTTTAAGCAGTGTGCTAGGTATCTAGTTCCTC 900
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 772 CTGCCAAAGGGAAACAGATGGTAGCCACTTTTAAGCAGTGTGCTAGGTATCTTGTTCCTC 831
Query 901 TCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTGACATTCGTCAAGCTTTAATGGTGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTGACATTCGTCAAGCTTTAATGGTGA 891
Query 961 TGGTTAACCACTGCATAAAGCGAGACTACCTTGCTGCAATGGACCACTACATCAAACTAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGGTTAACCACTGCATAAAGCGAGACTACCTTGCTGCAATGGACCACTACATCAAACTAG 951
Query 1021 CTATCGGGAACGCGCCATGGCCTATTGGAGTGACTATGGTTGGTATTCACGAACGTTCAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CTATCGGGAACGCGCCATGGCCTATTGGAGTGACTATGGTTGGTATTCACGAACGTTCAG 1011
Query 1081 CTCGAGAGAAGATTTACACCAACAGTGTTGCTCACATCATGAACGATGAAACCACTCGCA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CTCGAGAGAAGATTTACACCAACAGTGTTGCTCACATCATGAACGATGAAACCACTCGCA 1071
Query 1141 AGTATCTTCAGTCAGTTAAAAGACTGATGACTTTCTGTCAAAGACGTTATCCAACTATGC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AGTATCTTCAGTCAGTTAAAAGACTGATGACTTTCTGTCAAAGACGTTATCCAACTATGC 1131
Query 1201 CTTCTAAAGCCGTTGAGTTCAATAGCTTAGCCAACGGAAGCGACTTACAGTCTTTGCTAG 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1132 CTTCTAAAGCCGTTGAGTTCAATAGCTTAGCCAACGGAAGCGACTTACAGTCCTTGCTAG 1191
Query 1261 CCGAAGAGAGATTCTTTGGTGGTAATCGTGAACAGGTCTCAGAGGAGAGACTCCGGCTCA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CCGAAGAGAGATTCTTTGGTGGTAATCGTGAACAGGTCTCAGAGGAGAGACTCCGGCTCA 1251
Query 1321 TGCCTTCTCAGAGCGAAAGCTAGTCTTACTGTGTTTTCTGCTTT 1364
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1252 TGCCTTCTCAGAGCGAAAGCTAGTCTTACTGCGTTTTCTGCTTT 1295
> Ahg473339 jgi|Araly1|473339|fgenesh2_kg.1__3293__AT1G54590.1
Length=774
Score = 752 bits (407), Expect = 0.0
Identities = 573/652 (88%), Gaps = 15/652 (2%)
Strand=Plus/Plus
Query 704 TGCTGATAA--AG-ATATGAAACGTTTG--A-AAGCTAACTTT-GAGGATCTATGCGATG 756
||||||||| || || |||| |||||| | ||||| | ||| |||||| ||||||| |
Sbjct 126 TGCTGATAAGGAGAATTTGAAGCGTTTGAAAGAAGCTGA-TTTCGAGGATTTATGCGACG 184
Query 757 AGGATAAGATCCTTGTGTTTTATAAGAAGCTGTTGATTGAATGGAAACAGGAGCTTGATG 816
|||| ||||| |||||||| | |||||| | ||| |||||||||| ||||| |||||||
Sbjct 185 AGGACAAGATTCTTGTGTTCTGCAAGAAGTTATTGCTTGAATGGAAGCAGGAACTTGATG 244
Query 817 CGATGGAGAACACTGAGAGGAGAACTGCAAAAGGGAAACAGATGGTAGCCACTTTTAAGC 876
| ||||| |||||||||||||||||||| | ||||||||||||| |||||| |||||| |
Sbjct 245 CTATGGAAAACACTGAGAGGAGAACTGCTATAGGGAAACAGATGCTAGCCATTTTTAACC 304
Query 877 AGTGTGCTAGGTATCTAGTTCCTCTCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTG 936
||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||
Sbjct 305 AGTGTGCTAGGTATCTAACTCCTCTCTTCCACTTATGCCGGAACAAGGGTTTACCAGCTG 364
Query 937 ACATTCGTCAAGCTTTAATGGTGATGGTTAACCACTGCATAAAGCGAGACTACCTTGCTG 996
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 365 ACATTCGTCAAGCTTTAATGGTGATGGTTAACTGCTGCATAAAGCGAGACTACCTCGATG 424
Query 997 CAATGGAC-CACTACATCAAACTAGCTATCGGGAACGCGCCATGGCCTATTGGAGTGACT 1055
|||||| | || | |||||||||||| || ||||| || |||||||| || || ||||||
Sbjct 425 CAATGG-CTCAATTCATCAAACTAGCCATAGGGAATGCACCATGGCCCATCGGTGTGACT 483
Query 1056 ATGGTTGGTATTCACGAACGTTCAGCTCGAGAGAAGA-TT-TA-CACCAACAGTGTTGCT 1112
||||||||||||||||||||||| || |||||||||| || || || || |||||||||
Sbjct 484 ATGGTTGGTATTCACGAACGTTCTGCCCGAGAGAAGATTTCTACCAGCAGTAGTGTTGCT 543
Query 1113 CACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACT 603
Query 1173 TTCTGTCAAAGACGTTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCC 1232
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTCTGTCAAAGACGCTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCC 663
Query 1233 AACGGAAGCGACTTACAGTCTTTGCTAGCCGAAGAGAGATTCTTTGGTGGTAATCGTGAA 1292
||||||||||| |||||||| ||||| || | ||||||||||| ||||| | |||| ||
Sbjct 664 AACGGAAGCGAATTACAGTCGTTGCTCGCTGGAGAGAGATTCTGTGGTGCTGATCGCCAA 723
Query 1293 C-AGGTCTCAGAGGAGAGACTCCGGCTCATGCCTTCTCAGAGCGAAAGCTAG 1343
| || |||| ||||| |||||||| |||||||||||| | ||||| ||||
Sbjct 724 CGAG-TCTCCGAGGATAGACTCCGAATCATGCCTTCTCTCAACGAAATCTAG 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5