BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03160.1 Length=2878 Score E Sequences producing significant alignments: (Bits) Value Ahg470295 jgi|Araly1|470295|fgenesh2_kg.1__249__AT1G03160.1 3312 0.0 > Ahg470295 jgi|Araly1|470295|fgenesh2_kg.1__249__AT1G03160.1 Length=2897 Score = 3312 bits (1793), Expect = 0.0 Identities = 1911/1970 (97%), Gaps = 0/1970 (0%) Strand=Plus/Plus Query 909 TGAACTGCCGGAGAAAAAGAATTCTGCTGGCTTCATAAAATTAGAGGACAAACAGAAACT 968 ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 928 TGACCTGCCGGAGAAAAACAATTCTGCTGGGTTCATAAAATTAGAGGACAAACAGAAACT 987 Query 969 AATAGTAGAAATGGAGAAATCTGTGTTGAGAGAGACGATTGAAATCATCCACAAGGCGGC 1028 |||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 988 AATAATAGAAATGGAGAAATCAGTGTTGAGAGAGACGATTGAAATCATCCAGAAGGCGGC 1047 Query 1029 TCCACTGATGGAGGAAGTCTCCCTTCTAATTGATGCTGTTTCTCGGATCGATGAGCCGTT 1088 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1048 TCCACTGATGGAGGAGGTCTCCCTTCTAATTGATGCTGTTTCTCGGATTGATGAGCCGTT 1107 Query 1089 TCTGATGGTTATAGTGGGGGAATTTAACTCTGGAAAATCAACGGTTATCAATGCACTTCT 1148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1108 TCTGATGGTTATAGTGGGGGAATTTAACTCTGGAAAATCAACGGTTATCAATGCACTTCT 1167 Query 1149 TGGGAAGAGATACCTGAAAGAAGGGGTAGTCCCCACTACCAATGAAATCACGTTTCTGTG 1208 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1168 TGGGAAGAGATACCTGAAAGAGGGGGTAGTCCCCACTACCAATGAAATCACTTTTCTGTG 1227 Query 1209 CTACTCTGACTTGGAATCCGAAGAGCAACAACGTTGCCAAACACATCCAGATGGCCAATA 1268 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1228 CTACTCTGACTTGGAATCCGAAGAGCAACAACGATGCCAAACGCATCCAGATGGCCAATA 1287 Query 1269 TGTATGCTATCTTCCTGCACCAATACTTAAGGATATAAATATTGTTGACACACCTGGGAC 1328 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1288 TGTATGCTATCTTCCTGCACCAATACTTAAGGATATTAATATTGTTGACACACCTGGGAC 1347 Query 1329 CAATGTGATCCTTCAAAGGCAACAGCGTCTTACAGAAGAATTTGTTCCACGTGCAGATTT 1388 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1348 CAATGTGATCCTTCAAAGGCAACAACGTCTTACAGAAGAATTTGTTCCACGTGCAGATTT 1407 Query 1389 GCTTGTTTTTGTTCTTTCTGCTGACCGCCCTTTAACTGAAAGTGAGGTTGCGTTTCTCCG 1448 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1408 GCTTGTTTTCGTTCTTTCTGCTGACCGCCCTTTAACTGAAAGTGAGGTTGCGTTTCTCCG 1467 Query 1449 GTACACACAGCAGTGGAAAAAGAAATTTGTGTTTATTCTGAATAAATCTGATATCTATCG 1508 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1468 GTACACACAGCAGTGGAAGAAGAAATTTGTGTTTATTCTGAATAAATCTGATATCTACCG 1527 Query 1509 TGATGCTCGTGAGCTTGAGGAAGCTATTTCATTTGTTAAAGAGAATACACGGAAGTTGCT 1568 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1528 TGATGCCCGTGAGCTTGAGGAAGCGATTTCATTTGTTAAAGAGAATACACGGAAGTTGCT 1587 Query 1569 TAATACAGAAAATGTGATATTGTATCCGGTGTCCGCACGGTCTGCTCTTGAGGCGAAGCT 1628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1588 TAATACAGAAAATGTGATATTGTATCCGGTGTCCGCACGGTCTGCTCTTGAGGCGAAGCT 1647 Query 1629 TTCAACAGCTTCTTTGGTTGGCAGAGATGATCTTGAGATCGCAGATCCTGGTTCTAATTG 1688 |||||||||||| || ||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1648 TTCAACAGCTTCGTTAGTTGGCAGAGATGATCTTGAGGTCTCAGATCCTGGTTCTAATTG 1707 Query 1689 GAGAGTCCAGAGCTTCAATGAACTTGAGAAATTTCTTTATAGCTTCTTGGATAGCTCAAC 1748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1708 GAGAGTCCAGAGCTTCAATGAACTTGAGAAATTTCTTTATAGCTTCTTGGATAGCTCAAC 1767 Query 1749 AGCTACCGGGATGGAGAGAATAAGGCTTAAATTGGAGACACCCATGGCGATTGCTGAGCG 1808 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1768 TGCTACTGGGATGGAGAGAATAAGGCTTAAATTGGAGACACCCATGGCGATTGCTGAGCG 1827 Query 1809 TCTCCTTTCTTCTGTGGAAGCTCTTGTGAGACAAGATTGCCTAGCTGCTAGGGAAGACTT 1868 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1828 TCTCCTTGCTTCTGTGGAATCTCTTGTGAGACAAGATTGCCTAGCTGCTAGGGAAGACTT 1887 Query 1869 GGCTTCAGCAGACAAGATTATCAGTCGAACTAAAGAATACGCGCTTAAGATGGAATATGA 1928 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1888 GGCTTCAGCAGACAAGATTATCAATCGAACTAAAGAATACGCGCTTAAGATGGAATATGA 1947 Query 1929 GAGCATTTCTTGGAGAAGGCAGGCTCTCTCGTTGATTGATAATGCCAGATTACAAGTTGT 1988 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1948 GAGCATTTCTTGGAGAAGGCAGGCTCTCTCGTTGATTGATAATGCCAGATTACAAGTTGT 2007 Query 1989 TGATCTGATAGGAACTACCCTGCGACTATCAAGCCTTGATCTTGCGATCTCGTACGTGTT 2048 |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 2008 TGATCTAATAGGAACTACCCTGCGACTATCAAGCCTTGATCTTGCGGTCTCTTACGTGTT 2067 Query 2049 CAAAGGGGAAAAATCGGCCTCAGTAGCAGCTACATCCAAAGTTCAAGGTGAAATACTCGC 2108 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2068 CAAAGGGGAAAACTCGGCCTCAGTAGCAGCTACATCCAAAGTTCAAGGTGAAATACTCGC 2127 Query 2109 TCCAGCACTCACAAATGCGAAAGAATTGCTTGGAAAATATGCTGAATGGCTACAATCAAA 2168 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 2128 TCCAGCACTCACAAATGCTAAAGAGTTGCTTGGAAAATATGCTGAATGGCTACAATCAAA 2187 Query 2169 TACTGCCCGTGAAGGGAGTCTGTCTCTGAAATCATTCGAAAACAAATGGCCAACATATGT 2228 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2188 TACTGCCCGTGAAGGGAGTCTGTCCCTGAAATCATTCGAAAACAAATGGCCAACATATGT 2247 Query 2229 CAATTCAAAAACGCAATTGGGCATAGACACATATGACTTACTTCAGAAAACTGATAAAGT 2288 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 2248 CAATTCAAAAACTCAATTGGGCATAGACACATATGACTTACTTCGGAAAACTGATAAATT 2307 Query 2289 CAGCTTGAAAACAATACAGAACTTGAGTGCCGGAACCACATCAAAACGATTGGAACAAGA 2348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2308 CAGCTTGAAAACAATACAGAACTTGAGTGCCGGAACCACATCAAAACGATTGGAACAAGA 2367 Query 2349 TATTCGAGAAGTGTTCTTTGTGACAGTTGGTGGGCTTGGAGCTGCAGGACTGTCTGCATC 2408 |||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| Sbjct 2368 TATTCGAGAAGTGTTCGTTGTGACAGTTGGTGGGCTTGGAGCTGCGGGACTATCTGCATC 2427 Query 2409 ACTTCTAACCTCAGTGCTACCGACCACACTGGAAGATCTTCTTGCTCTTGGCCTTTGCTC 2468 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 2428 ACTTCTAACCTCAGTGCTACCCACCACATTGGAAGATCTTCTTGCTCTTGGCCTTTGCTC 2487 Query 2469 CGCTGGAGGGTATGTGGCTATAGCAAACTTCCCATATCGAAGACAGGCTATAATTGGTAA 2528 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 2488 CGCTGGAGGGTATGTGGCTATAGCAAACTTCCCATATCGAAGACAATCTATAATTGGCAA 2547 Query 2529 GGTGAATAAAGTGGCTGATGCGTTGGCTCAACAGCTCGAAGACGCTATGCAAAAAGATCT 2588 ||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| Sbjct 2548 GGTGAATAAAGTGGCTGATGCGTTGGCTCAACAACTCGAAGATTCTATGCGAAAAGATCT 2607 Query 2589 TTCAGATGCGACGAGTAATCTAGTTAACTTTGTGAATATTGTTGCCAAGCCTTATCGAGA 2648 |||||||||||| | ||||||||| || ||||||||||| |||||||||||||||||||| Sbjct 2608 TTCAGATGCGACTAATAATCTAGTAAATTTTGTGAATATCGTTGCCAAGCCTTATCGAGA 2667 Query 2649 AGAAGCTCAGCTAAGACTTGATCGTCTTTTAGGAATCCAGAAAGAATTATCAGATATTAG 2708 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2668 AGAAGCTCAGCTAAGACTTGATCGTCTTTTAGGAATCCAGAAAGAACTATCAGATATTAG 2727 Query 2709 AAGTAAATTACAGTTGCTACAAGTTGATATTGATAACCTTCATGTATCACGAGACGAGAT 2768 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2728 AAGTAAATTACAGTTGCTACAAGTTGATATTGATAACCTTCATGTATCACGAGATGAGAT 2787 Query 2769 GAGACTTTAGCTATTCCAACACAATGTCGGGTTTTCCCTTCTTGACATTGTTCAGTGGGG 2828 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2788 GAGACTTTAGCTGTTCCAACACAATGTCGGGTTTTCCCTTCTTGACATTGTTCAGTGGGG 2847 Query 2829 GGCAAGTGTATGTACTTTGTCATAATGAATAATACCTGCCAGTTCCGACT 2878 |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2848 GGCAAGTGTATGTACTTTGTCATAATGAATAAGACCTGCCAGTTCCGACT 2897 Score = 1266 bits (685), Expect = 0.0 Identities = 835/905 (92%), Gaps = 20/905 (2%) Strand=Plus/Plus Query 15 tctcactctctctctttctctctccatgagaactctaatctctcACCGGCAATGTGTGAC 74 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTCTCTCTCTCTCTCTCTCCATGAGAACTCTAATCTCTCACCGGCAATGTGTGAC 60 Query 75 GTCACCGTTTCTTATCTCCGCCGCATCTCCACCGTTTCCTGGCCGGTGCTTTAAGTTATC 134 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 GTCACCGTTTCTTATCTCCGCCGCATCTCCACCGTTTCCTGGCCGGTGCTTTCAGTTATC 120 Query 135 CTCCTTTACTCCTCCACGTCATAGGCGTTTTTCTTCTCTCTCGATCAGAAACATTTCGCA 194 ||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||| Sbjct 121 ATCCTTTACTGCTCCACGTCATAGGCGTCTTCCTTCTCTCTCGATCAGAAACGTTTCGCA 180 Query 195 TGAATCCGCCGATCAGACTTCTTCTTCTAGGCCGCGAACTCTTTATCCTGGTGGTTACAA 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGAATCCGCCGATCAGACTTCTTCTTCTAGGCCGCGAACTCTTTATCCTGGTGGTTACAA 240 Query 255 GCGTCCCGAACTCGCCGTTCCCGGTTTACTTCTCCGGCTAGACGCCGACGAGGTTATGAG 314 ||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| Sbjct 241 GCGTCCCGAACTCGCCGTTCCCGGTCTACTTCTCCGGCTAGACGCGGATGAGGTTATGAG 300 Query 315 CGGGAATCGTGAAGAGACTCTTGATTTGGTCGACCGTGCTTTAGCTAAATCGGTTCAAAT 374 || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 301 TGGAAATCGTGAAGAGACTGTCGATTTGGTCGACCGTGCTTTAGCTAAATCGGTTCAAAT 360 Query 375 CGTCGTGATTGATGGCGGAGCCACCGCTGGTAAGCTCTACGAGGCGGCTTGTTTGCTGAA 434 ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| Sbjct 361 CGTCGTGATTGATGGCGGAGCTACCGCTGGTAAGCTCTATGAGGTGGCTTGTTTGCTGAA 420 Query 435 ATCACTTGTCAAAGGCCGTGCTTACCTCTTGATCGCTGAACGTGTTGATATCGCCTCCGC 494 |||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 421 ATCACTTGTCAAGGGTCGTGCTTACCTCTTGATCGCCGAACGCGTTGATATCGCCTCCGC 480 Query 495 CGTTGGTGCTAGTGGTGTTGCTCTCTCCGACGAAGGTCTTCCGGCGATTGTGGCGAGAAA 554 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 481 CGTTGATGCTAGTGGTGTTGCTCTCTCCGACGAAGGTCTTCCGGCGATAGTGGCGAGAAA 540 Query 555 CACATTGATGGGATCCAACCCCGACTCGGTACTTCTTCCACTGGTAGCTCGGATTGTGAA 614 |||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||| Sbjct 541 CACATTGATGGGATCCAATCCCGACTCGGTAGTTCTTCCATTGGTAGCTAGGATTGTGAA 600 Query 615 GGATGTTGATTCTGCTCTAATTGCCTCAAGCTCCGAGGGTGCTGATTTCCTTATACTTGG 674 |||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| Sbjct 601 GGATGTTGATTCTGCTCTAAGTGCCTCTAGCTCTGAGGGTGCTGATTTCCTTATACTTGG 660 Query 675 ATCTGGTGAAGA-AGATACGCAAGTG----G-CGGATTCTTTGTTGAAGAGCGTGAAAAT 728 | ||||||||| | | | | || | | |||||||||||||||||||||||||| Sbjct 661 AAGTGGTGAAGATAAACAAGTGGGTTTATTGTCAGATTCTTTGTTGAAGAGCGTGAAAAT 720 Query 729 ACCGATATATGTGACTTGCAG-AGGCAATGAAGAAGCTAAAGAAGAATTGCAGTTACTGA 787 ||||| | ||| |||||||| || ||| |||| | || ||| ||||||||||||| Sbjct 721 TCCGATTTTTGTTACTTGCAGCAG-CAA--AAGA-G--AA-GAA---TTGCAGTTACTGA 770 Query 788 AATCAGGTGTTTCTGGTTTTGTTATTTCGTTGAAAGATTTGCGTTCTTCTAGGGATGTAG 847 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 771 AATCAGGTGCTTCTGGTTTTGTTATTTCGTTGAAAGATCTGCGTTCTTCTAGGGATGTAG 830 Query 848 CTCTTCGCCAGAGTCTTGATGGAGCTTATGTTGTAAATAATCATGAGACACAAAATATGA 907 ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| || Sbjct 831 CTCTTCGCCAGTGTCTTGATGGAGCTTATGTTGTAAAT---CATGAAACACAAAATAAGA 887 Query 908 ATGAA 912 ||||| Sbjct 888 ATGAA 892 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108633378740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5