BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03210.1 Length=861 Score E Sequences producing significant alignments: (Bits) Value Ahg311422 jgi|Araly1|311422|fgenesh1_pm.C_scaffold_1000202 1254 0.0 > Ahg311422 jgi|Araly1|311422|fgenesh1_pm.C_scaffold_1000202 Length=852 Score = 1254 bits (679), Expect = 0.0 Identities = 808/867 (93%), Gaps = 21/867 (2%) Strand=Plus/Plus Query 1 ATGGCGGAGAAAAAGAGAGTCAAGTACTTCATTGTTGATGCATTCGCTGAATCTGCCTTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGGAGAAAAAGAGAGTCAAGTACTTCATTGTTGATGCATTCGCTGAATCTGCCTTC 60 Query 61 AAAGGGAATCCAGCTGCTGTTTGCTTTCT--A-GA--A-GACGATAACGAGAGAGACGAC 114 ||||||||||||||||||||||||||||| | || | |||||||| ||||||||||| Sbjct 61 AAAGGGAATCCAGCTGCTGTTTGCTTTCTGGACGACGATAACGATAACCAGAGAGACGAC 120 Query 115 GCGTGGCTTCAGTCTCTTGCCACCGAGTTCAATATCTCCGAGACTTGTTTCCTCACTCCG 174 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 121 GCGTGGCTTCAGTCTCTTGCTGCCGAGTTCAACCTCTCCGAGACTTGTTTCCTCACTCCG 180 Query 175 ATCATCGGAGACTTGCCTCGCTTCCGTCTCCGTTGGTTCACTCCAGTCGCTGAGGTGGAT 234 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATCATCGGAGACTTCCCTCGATTCCGTCTCCGTTGGTTCACTCCAGTCGCTGAGGTGGAT 240 Query 235 TTGTGTGGTCATGCAACTTTAGCATCTGCTCACGTTCTCTTCTCAACTGGTTTGGTTGGT 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 241 TTGTGTGGTCATGCAACTTTAGCATCTGCTCACGTTCTCTTCTCAACTGGTTTGATTGTT 300 Query 295 TCAGAGACAGTTGAGTTCGACACATTATCAGGGATTCTAACAGCTAAACATCTCAAAAAT 354 ||||| ||||||||||||| ||||||||||||| |||||||||||||||| || ||||| Sbjct 301 TCAGAAACAGTTGAGTTCGCCACATTATCAGGGGCTCTAACAGCTAAACATGTC-AAAAT 359 Query 355 GATGATGATGGAGAAGAATCAAGTATCGAATTGGATTTCCCTGTTGTTCCAACATATGAA 414 ||||||| | || |||||||||||||||||| |||| || || | |||| Sbjct 360 --TGATGAT------G----AA--ATCGAATTGGATTTCCCTCTTGTACCTACTTTTGAA 405 Query 415 GTCAACTACATTGATGATGATCTCTCTTTGTTCTCCAAAGCCTTGAATGGAGCTACCATT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 GTCAACTACATTGATGATGATCTCTCTTTGTTCTCCAAAGCCTTGAATGGAGCTACCATT 465 Query 475 CTTGATGTCAAAGCCACAAAGAAAGACCTCCTCGTTGTGCTTTCATCTTGGGAAGCTGTT 534 ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 466 GTTGATGTTAAAGCCACAAAGAAGGACATCCTCGTTGTGCTTTCATCTTGGGAAGCTGTC 525 Query 535 ATTGATTTGAAGCCAAGATTAGATGAGATATCGAAATGCCCTTGTGAAGGAATGATGGTG 594 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 ATTGAATTGCAGCCAAGATTAGATGAGATATCGAAATGCCCTTGTGAAGGAATGATGGTG 585 Query 595 ACTGCCGCTGCTTCTGATGGATCTACTTATGATTTCTGTAGTCGCTACTTTGCCCCGAGA 654 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 586 TCTGCCGCTGCTTCTGCTGAATCTACTTATGATTTCTGTAGTCGCTACTTTGCCCCGAGA 645 Query 655 TTCGGAATCAATGAGGACCCTGTTACTGGAAGTGCTCATTGTGCTTTAGCTCATTACTGG 714 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 646 TTCGGAATCAATGAGGACCCTGTTACTGGAAGTGCGCATTGTGCCTTAGCACATTACTGG 705 Query 715 AGCCTCAGGATGAACAAGTGTGATTTCTTCGCCTACCAGGCTTCAAGCAGAGGAGGAACG 774 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 706 AGCCTCAAGATGAACAAGTGTGATTTCTTCGCCTACCAGGCTTCAAGCAGAGGGGGAACG 765 Query 775 TTGAAGGTGCACCTGGACAAAGAGAAGCAGAGGGTTCTACTGAGAGGCAAAGCAGTCACT 834 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 766 TTGAAGGTGCACCTGGACAAAGAGAAGCAGAGGGTTCTGCTCAGAGGCAAAGCAGTCACT 825 Query 835 GTTATGGAAGGTTATGTCTTAGTGTGA 861 ||||||||||||||||||||||| ||| Sbjct 826 GTTATGGAAGGTTATGTCTTAGTTTGA 852 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31870758612 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5