BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03590.1 Length=2003 Score E Sequences producing significant alignments: (Bits) Value Ahg910021 jgi|Araly1|910021|Al_scaffold_0001_275 2298 0.0 Ahg490221 jgi|Araly1|490221|fgenesh2_kg.6__3355__AT4G03415.1 1026 0.0 > Ahg910021 jgi|Araly1|910021|Al_scaffold_0001_275 Length=1383 Score = 2298 bits (1244), Expect = 0.0 Identities = 1334/1379 (97%), Gaps = 0/1379 (0%) Strand=Plus/Plus Query 389 ATGGGAGGTTGTATCTCTAAGACTTCGTGGAGCAATGAAGAGCCTATGCATCGCCCATGT 448 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGGAGGTTGTATCTCTAAGAGTTCGTGGAGCAATGAAGAGCCTATGCATCGCCCGTGT 60 Query 449 CTTGGGATGGGATGTTGTGGGAGCAAAATGGGGAAGAGAGGTTTTTCAGACCGCATGGTT 508 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 61 CTCGGGATGGGATGTTGTGGGAGCAAAATGGGGAAGAGAGGTTTTTCAGACCGCATCGTT 120 Query 509 TCACTTCATAACTTGGTTTCTATACCGAATCGGATCATTGGGAATGGAAAGAGCAGGAGT 568 || ||||||||||| ||||||||||||||||||||||| || || ||||||||||||||| Sbjct 121 TCGCTTCATAACTTAGTTTCTATACCGAATCGGATCATCGGTAACGGAAAGAGCAGGAGT 180 Query 569 TCTTGCATTTTCACTCAACAGGGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGG 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTTGCATTTTCACTCAACAGGGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGG 240 Query 629 GAAGATTTTATGTCGAAAGATGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCTCAT 688 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 GAAGATTTTATGTCGAAAGATGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCCCAT 300 Query 689 GGTCATCTTGTTGCTCGTAAAGTGAGAGATTCATTGCCTGTAAAGTTGCTGTCCCTCCTG 748 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 301 GGTCATCTTGTTGCTCGTAAAGTGAGGGATTCATTGCCTGTAAAGTTGCTGTCTCTCCTG 360 Query 749 AATTCCATTAAGTCGAAGCAAAATGGACCCATAGGAACTCGTGCAAGCAAATCCGATAGC 808 ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| Sbjct 361 AATTCCATTAAGTCGAAGCAAAATGGATCCACAGGAACTCGTACAAGCAAATCCGATAGC 420 Query 809 CTAGAAGCTGAGAAAGAAGAATCTACTGAGGAGGATAAATTGAATTTCTTATGGGAGGAA 868 |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 421 CTAGAAGCTGAGAAGGAAGAATCTACTGAGGAGCATAAATTAAATTTCTTATGGGAGGAA 480 Query 869 GCTTTCTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAA 928 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCTTTCTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAA 540 Query 929 TGCTTCTGCAGTGGCTGCACAGCTGTTACAATCATTAAGCAGGGATCAAATCTATACATG 988 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| Sbjct 541 TGCTTCTGCAGTGGCTGCACGGCTGTTACAATCATTAAGCAGGGGTCAAATCTATTCATG 600 Query 989 GGTAACATTGGGGATTCTCGGGCGATACTTGGATCTAAAGACAGCAATGATTCGATGATT 1048 || |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || Sbjct 601 GGAAACATTGGGGATTCTCGGGCGATACTTGGATCCAAAGACATCAACGATTCGATGGTT 660 Query 1049 GCAGTTCAGCTAACAGTAGACTTAAAACCTGACTTGCCAAGGGAAGCTGAGAGGATCAAA 1108 ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 661 GCAGTTCAGCTAACAGTTGACTTAAAGCCTGACTTACCAAGGGAAGCTGAGAGGATCAAA 720 Query 1109 CAGTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTA 1168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CAGTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTA 780 Query 1169 CCATTTGATAATGCTCCTGGATTAGCCATGGCTAGAGCTTTCGGTGATTTCTGTCTGAAA 1228 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 781 CCATTTGATAATGCTCCTGGATTAGCTATGGCTAGAGCTTTCGGTGATTTCTGTCTGAAA 840 Query 1229 GACTATGGAGTGATTTCGATACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCAG 1288 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GACTACGGTGTGATTTCGATACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCAG 900 Query 1289 TTCATTGTCTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTAGTTGAA 1348 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 901 TTCATTGTCTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTGGTTGAA 960 Query 1349 GTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGGCTCGTGGTGGATTCAGCTGTA 1408 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 961 GTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGACTCGTGGTGGATTCAGCTGTA 1020 Query 1409 CGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTGTTTG 1468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTGTTTG 1080 Query 1469 TTTCTCGACGGCAGAATGGACTCAGAGACATCAGATAACGAAGAACAATGCTTCTCTTCG 1528 ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1081 TTTCTAGACGGCAGAATGGACTCAGAGTCATCGGATAACGAAGAACAATGCTTCTCTTCG 1140 Query 1529 GCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAGAAAT 1588 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAGAAAC 1200 Query 1589 GTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTATGGTAAAGTGATTGCA 1648 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1201 GTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTACGGTAATGTGATTGCA 1260 Query 1649 GAGGCTGATAATGCAGAGAAGGAGAAAACGAGGGAAGGAGAACAGAACTGGTCGGGACTA 1708 ||| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 1261 GAGACTGATAATGCAGAGAAGGAGAAAACGACGGTAGGAGAACAGAACTGGTCAGGACTA 1320 Query 1709 GAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGGAACC 1767 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1321 GAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGAAACC 1379 > Ahg490221 jgi|Araly1|490221|fgenesh2_kg.6__3355__AT4G03415.1 Length=1407 Score = 1026 bits (555), Expect = 0.0 Identities = 1127/1396 (81%), Gaps = 68/1396 (5%) Strand=Plus/Plus Query 416 TGGAGCAAT-GA-AG-AGCCTATGCATCGCCCATGTCTTGGGATGGGATGTTGTGGGAGC 472 ||||||||| || || ||||| ||| | | |||| ||| ||||| || ||||||| |||| Sbjct 46 TGGAGCAATGGAGAGAAGCCTGTGCGTAGGCCATATCTCGGGATTGGTTGTTGTGTGAGC 105 Query 473 AAAATGGG-GAAGAG-AGGTTTTTCAGACCGCATGGTTTCACTT-CATAACTTGGTTTCT 529 |||| ||| |||||| | | |||||||||| ||| || || || || | |||| |||| Sbjct 106 AAAA-GGGCGAAGAGAACG-TTTTCAGACCACATTGTCTC-GTTGCAGAGCTTGACTTCT 162 Query 530 ATACCGAATCGGATCATTGGGAATGGAAAGAGCAGGAGTTCTTGCATTTTCACTCAACAG 589 ||||| |||||||||| | | ||||||||||| ||||| |||||||||||||| Sbjct 163 ATACCAAATCGGATCACCACTAGCAGCAAGAGCAGGAGCTCTTGTATTTTCACTCAACAA 222 Query 590 GGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGGGAAGATTTTATGTC-GAAAGA 648 |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| Sbjct 223 GGACGCAAGGGTATTAATCAGGACGCCATGATTGTGTGGGAAGATTTTATGTCTG-AAGA 281 Query 649 TGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCTCATGGTCATCTTGTTGCTCGTAA 708 ||| |||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||| Sbjct 282 TGTGACCTTTTGTGGTGTATTTGATGGTCATGGTCCTTATGGTCATCTTGTTGCTCGTAA 341 Query 709 AGTGAGAGATTCATTGCCTGTAAAGTTGCTGTCCCTCCTGAATTC-CATTAAGTCGAAGC 767 |||||||||| |||||||||| ||||||| ||| || | || | | || |||| |||| Sbjct 342 AGTGAGAGATACATTGCCTGTGAAGTTGCAGTCTTTCTTTCATACGC-TTCAGTCAAAGC 400 Query 768 AAAATGGACCCATAGGAACTCG-T---G--------CAAGCAAATCCGATAG-CCTAGAA 814 |||| || | | ||||||||| | | |||||||||| | | | || |||| Sbjct 401 AAAACGGTTCGAAAGGAACTCGATTCAGAAGAAATTCAAGCAAATCGGCT-GTCCAAGAA 459 Query 815 GCTGAGAAAGAAGAATCTACTGAGGAGGATAAATTGAATTTCTTATGGG-AGGAAGCTTT 873 || | ||||||| |||| || ||||||||| | || ||| |||| || ||||||| Sbjct 460 GCCGTTAAAGAAGGATCT---GACGAGGATAAACTAAAAGGCTTGTGGGGAG-AAGCTTT 515 Query 874 CTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAATGCTT 933 ||||||||| || || || |||||||||||||| ||||| ||||||||||| || || || Sbjct 516 CTTGAAATCTTTTAAAGCCATGGATAAGGAACTACGATCTCATCCTAATCTGGACTGTTT 575 Query 934 CTGCAGTGGCTGCACAG-CTGTTACAAT-CATTAAGCAGGGATCAAATCTATACATGGGT 991 ||| |||||| | || | | || ||||| | |||| ||||| || ||||| | |||||| Sbjct 576 CTGTAGTGGCAGTACTGGC-GTAACAATTC-TTAAACAGGGGTCTAATCTCTTCATGGGA 633 Query 992 AACATTGGGGATTCTCGGGCGATACTTGGATCTAAAGACAGCAATGATTCGATGATTGCA 1051 |||||||||||||||||||| || |||||||| ||||| || || ||||| ||| | ||| Sbjct 634 AACATTGGGGATTCTCGGGCCATCCTTGGATCAAAAGATAGTAACGATTCTATGGTGGCA 693 Query 1052 GTTCAGCTAACAGTAGA-CTTAAAACCTGACTTGCCAAGGGAAGCTGAGAGGATCAAACA 1110 ||| |||||||| || || || || || || || |||||||||||||||||||||| Sbjct 694 ACTCAACTAACAGTTGATCTGAAG-CCGGATTTACCGAGGGAAGCTGAGAGGATCAAACG 752 Query 1111 GTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTACC 1170 |||||||||| | || |||||| || ||||||||||||||||| | ||||||||| |||| Sbjct 753 GTGTAAAGGTCGAGTATTTGCATTGGAAGACGAGCCAGAGGTGCCGCGAGTTTGGTTACC 812 Query 1171 ATT-TGATAATGCTCCTGGATTAGCCATGGCTAGAGC-TTTCGGTGATTTCTGTCTGAAA 1228 || |||| |||| |||||||| ||||||||||| || ||| ||||| |||||||| ||| Sbjct 813 -TTATGATGATGCACCTGGATTGGCCATGGCTAGGGCGTTT-GGTGACTTCTGTCTAAAA 870 Query 1229 GACTATGGAGTGATTTC-GATACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCA 1287 || |||||||| ||||| | |||| |||||| ||||||||||||||||||| | |||||| Sbjct 871 GATTATGGAGTCATTTCAG-TACCTGAGTTCACTCACCGTGTTCTTACAGACAAAGATCA 929 Query 1288 GTTCATTGT-CTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTAGTTG 1346 |||||||| |||| |||| || ||||| ||||||||| ||||||| |||||||| |||| Sbjct 930 ATTCATTGTTCTTG-CCTCGGACGGAGTATGGGATGTGTTAAGCAATGAAGAAGTGGTTG 988 Query 1347 A-AGTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGG-CTCGTGGTGGATTCAGC 1404 | | || |||| |||||||||||||| |||||||| |||||| | | ||||| | || || Sbjct 989 ACA-TTATAGCTTCAGCTACAAGCCGAGCATCAGCGGCTAGGAC-CTTGGTGAACTCGGC 1046 Query 1405 TGTACGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTG 1464 || || ||||||||||| |||||||||||||| || ||||||||||||||||| || || Sbjct 1047 TGCGCGTGAATGGAAACTGAAGTACCCGACTTCCAAAATGGATGATTGTGCAGTGGTATG 1106 Query 1465 TTTGTTTCTCGACGGCAGAATGGACTCAGAGACATCAGATAACGAAGAACAATGCTTCTC 1524 ||||||||| || || | |||||| || ||| || ||| | || ||||| ||||||| Sbjct 1107 TTTGTTTCTGGATGGGAAAATGGATTCTGAG---TCGGATTATGATGAACAGGGCTTCTC 1163 Query 1525 TTCGGCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAG 1584 ||| |||||||| || ||||||||||| || |||| || ||||||| ||||| || || Sbjct 1164 TTCAGCAACAAATGCTGTAGAATCAGATGACGGCCAAAGATCAGAACCATGTCTCCAAAG 1223 Query 1585 AAA-TGTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTATGGTAAAGTGA 1643 ||| | ||||||| ||||||| ||| | ||||||||||| | | ||| ||||| |||| Sbjct 1224 AAACT-TCACAGTTAGATCATCCTCA--G-ATCAAGAAAACGAGACTTACGGTAATGTGA 1279 Query 1644 TTGCAGAGGCTGATAATGCAGAGAAGGAGAAAACGAGGGAAGGAGAACAGAACTGGTCGG 1703 | ||||| ||||| |||||| | ||||||||| | | ||||| || ||||||| || Sbjct 1280 ATACAGAGACTGAT---GCAGAGGATGAGAAAACG-GT-A-GGAGATCAAAACTGGTTGG 1333 Query 1704 GACTAGAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGG 1763 | |||||||| || || || |||||||| ||||| || |||||||||||| ||| |||| Sbjct 1334 GTCTAGAAGGCGTCACACGCGTGAACTCACTTGTCCAGCTTCCGAGATTCTCTGAAGAG- 1392 Query 1764 AA--CCAAAGACTTGA 1777 || |||| ||||||| Sbjct 1393 AAGTCCAA-GACTTGA 1407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75304414365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5