BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03600.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470332 jgi|Araly1|470332|fgenesh2_kg.1__286__AT1G03600.1 1050 0.0
> Ahg470332 jgi|Araly1|470332|fgenesh2_kg.1__286__AT1G03600.1
Length=733
Score = 1050 bits (568), Expect = 0.0
Identities = 672/720 (93%), Gaps = 16/720 (2%)
Strand=Plus/Plus
Query 30 GAGTTCCGACAATGGCTTCAGCATCAGCGACAGCTACTCTTCTCAAACCCAATCTTCCGC 89
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1 GAGTTCCGACAATGGCATCAGCTTCAGCGACAGCTACTCTTCTCAAACCCAATCCTCCGC 60
Query 90 CGCATAAACCGACCATCATCGCCTCCTCCGTATCTCCGCCTCTTCCTCCTCCACGTCGCA 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCATAAACCGACCATCATCGCCTCCTCCGTATCTCCGCCTCTTCCTCCTCCACGTCGCA 120
Query 150 ACCACCTCCTCCGCCGCGATTTCCTCTCCCTGGCGGCAACATCCACGCTTCTAACACAAT 209
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ACCACCTCCTCCGCCGCGATTTCCTCTCCCTAGCGGCAACATCCACGCTTCTAACACAAT 180
Query 210 CGATTCAGTTTCTAGCTCCGGCGCCGGTCT-CCGCCGCTGAAGATGAAGAGTATATCAAA 268
|||||| |||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 181 CGATTCCGTTTCTAGCTCCGGCGCCAG-CTTCCGCCGCTGAAGATGAAGAGTATATCAAA 239
Query 269 GATACGTCGGCAGTGATCAGTAAAGTAAGGAGTACGCTTTCGATGCAGAAGACAGATCCG 328
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GATACATCGGCAGTGATCAGTAAAGTTAGGAGTACGCTTTCGATGCAGAAGACAGATCCA 299
Query 329 AATGTGGCTGATGCGGTGGCGGAGCTGAGAGAAGCGTCGAATTCTTGGGTTGCCAAGTAC 388
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 300 AATGTGGCTGATGCGGTGGCAGAGCTGAGAGAAGCGTCGAATTCTTGGGTTGCTAAGTAC 359
Query 389 CGGAAAGAGAAAGCTCTTCTCGGAAAAGCTTCTTTCCGGGATATATACTCGGCGTTGAAT 448
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 CGGAAAGAGAAAGCTCTTCTCGGAAAAGCTTCTTTCCGGGATATTTACTCGGCGTTGAAT 419
Query 449 GCTGTTTCAGGTCATTATGTGAGTTTTGGTCCGACGGCTCCGATTCCGGCGAAGAGGAAG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCTGTTTCAGGTCATTATGTGAGTTTTGGTCCGACGGCTCCGATTCCGGCGAAGAGGAAG 479
Query 509 GCGAGGATTCTTGAAGAGATGGAAACTGCTGAGAAAGCTCTCACAAGAGGAAGATGAAAA 568
|| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 480 GCAAGGATTCTTGAAGAGATGGAAACTGCTGAGAAGGCTCTCTCAAGAGGAAGATGAAAA 539
Query 569 AACTG-CAGTCAGGCCTTCTTCTCCATTTTCTTGTTGATGAAAATTTTATTTTCCTAAAA 627
| || || | ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 540 AT-TGACAATTTCTTCTTCTCCTCCATTTTCTTGTTGATGAAA-TTTTATTTTCCTAAAA 597
Query 628 ATGCCAATCGAATTATATGAGAAGAGAAACTTGAATTGGCTCGCC-T-GCttt---tttt 682
|||||||| |||||||||||||||||||||||||||||||||| | || | ||||
Sbjct 598 TTGCCAATCAAATTATATGAGAAGAGAAACTTGAATTGGCTCGCAATCGCATGCCATTTT 657
Query 683 tttCATTCC-TGTAAAATACTTA--A-TGTTCTGCATGATAATTGCTTAATTATCATTAT 738
||| |||| ||||||||||||| | | | ||||||||||||| ||| |||||||||||
Sbjct 658 TTT--TTCCCTGTAAAATACTTATCAATATCCTGCATGATAATTACTTGATTATCATTAT 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5