BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03680.1 Length=910 Score E Sequences producing significant alignments: (Bits) Value Ahg470338 jgi|Araly1|470338|fgenesh2_kg.1__292__AT1G03680.1 987 0.0 Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1 368 4e-101 > Ahg470338 jgi|Araly1|470338|fgenesh2_kg.1__292__AT1G03680.1 Length=794 Score = 987 bits (534), Expect = 0.0 Identities = 703/781 (90%), Gaps = 25/781 (3%) Strand=Plus/Plus Query 98 ATCTTCTTCGTT-TGGATATTATTACATTTGGGACTCAAGAAGAAATCGAATCTATCGTG 156 ||||||||| || |||||||||||||||||||||||||||||| |||||||||| | | Sbjct 23 ATCTTCTTC-TTCTGGATATTATTACATTTGGGACTCAAGAAG-AATCGAATCT-T-G-A 77 Query 157 TGTG-TAGAT-TGCT-TCTCTCTATCTCT-TCTCTCGCTACACAACAATGGCTGCTTACA 212 | || | | | || ||||||||||||| |||||| |||||||||||||||||||| || Sbjct 78 T-TGCT-TCTCT-CTCTCTCTCTATCTCTATCTCTCTCTACACAACAATGGCTGCTTTCA 134 Query 213 CGTGTACTTCCCGTCCGCCGATTTCTATCCGGTCAGAGATGAGAATCGCTTCCTCGCCGA 272 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 135 CTTGTACTTCCCGTCCGCCGATTTCAATCCGGTCAGAGATGAGAATCGCTTCCTCGCCGA 194 Query 273 CGGGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTGCCGGAATCGAGCGGATTGAGGA 332 || |||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 195 CGTGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTACCTGAATCCTGCGGATTGAGGA 254 Query 333 CTCGCGTTTCTCTATCTTCACTCTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGCG 392 ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 255 CTCGCGTTTCTCTCTCTTCGGTTTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGCG 314 Query 393 TTATCTGTGAAGCTCAGGACACTGCTACAGGAATTCCAGTGGTCAACGATTCAACATGGG 452 ||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 315 TTATCTGCGAAGCCCAGGAAACTGCAACAGGAATTCCAGTGGTCAACGATTCAACATGGG 374 Query 453 ACTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCACCATGGTGTG 512 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 375 AGTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCTCCATGGTGTG 434 Query 513 GACCCTGCAAAATGATTGATCCCATTGTCAACGAACTCGCGCAAAAGTACGCCGGCCAGT 572 |||| |||||||||||||||||||||||||||||| | || ||| |||| || || ||| Sbjct 435 GACCTTGCAAAATGATTGATCCCATTGTCAACGAATTGGCACAACAGTATGCAGGGAAGT 494 Query 573 TCAAGTTCTACAAACTTAACACTGATGAGTCTCCTGCAACCCCTGGCCAGTATGGTGTTA 632 |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| Sbjct 495 TCAAGTTCTACAAACTTAACACTGATGATTCTCCTTCAACCCCTAGCCAGTATGGTGTTA 554 Query 633 GAAGCATCCCAACTATCATGATCTTTGTCAATGGTGAGAAGAAGGATACAATCATCGGTG 692 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 555 GAAGCATCCCAACTATCATGATCTTTGTCAAGGGTGAGAAGAAGGATACAATCATCGGTG 614 Query 693 CTGTCTCTAAAGACACTTTAGCAACCAGCATCAACAAATTCTTGTAATGAACTACTAGTC 752 | || |||||| || |||||||||||||||| ||||||||||||||| || | ||| | Sbjct 615 CAGTGTCTAAATCCATTTTAGCAACCAGCATCGACAAATTCTTGTAATCAAGT-CTATTA 673 Query 753 ACTGT-TCTCTTTTCTCTGTATCTCTCGACTCTCTACCTTTTACCTATCTACTC----A- 806 | || ||||||||||||||||||||| | ||| ||||||||||||||||||| | Sbjct 674 AAGGTCTCTCTTTTCTCTGTATCTCTCAAGTCTGAACCTTTTACCTATCTACTCCCCCAC 733 Query 807 TCA-C--TGTTCATCTAGACTTGTATGATAATAT--GATGTCTCAGGTTTTCAGAATTTG 861 ||| | ||||||||||||||||||||||||||| |||||||||| ||||||||| ||| Sbjct 734 TCATCACTGTTCATCTAGACTTGTATGATAATATATGATGTCTCAGATTTTCAGAAATTG 793 Query 862 A 862 | Sbjct 794 A 794 > Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1 Length=851 Score = 368 bits (199), Expect = 4e-101 Identities = 457/575 (79%), Gaps = 44/575 (8%) Strand=Plus/Plus Query 200 ATGGCTGCTTACACGTGTACTTCCCGTCCGCCGATTTCTATCCGGTCAGAGATGAGAATC 259 |||||||||| ||| ||||| || ||||| ||||||||| |||| || |||| | |||| Sbjct 91 ATGGCTGCTTTCACTTGTACCTCTCGTCCTCCGATTTCTCTCCGTTCTGAGACCAAAATC 150 Query 260 GCTTCCTCGCCGA-CGGGTTC--CT-TCTCTACTCGACAGATGTTCTCTGTGTTGCCGGA 315 || ||| | || | ||| ||| || ||||| |||| | ||||||| | ||||| ||||| Sbjct 151 GCATCCACACC-ATCGGCTTCTTCTCTCTCTTCTCGGCGGATGTTCGCCGTGTTACCGGA 209 Query 316 ATCGAGC-GGATTGAGGACT-CG-CGTTTCTC--TAT----CTTC----ACTCTCGA--- 359 ||| | | || |||| || | || | |||||| | | |||| || ||||| Sbjct 210 ATC-ATCAGGTTTGA-GAATCCGTC-TTTCTCTTTCTCCGGCTTCGTTGAC-CTCGATTC 265 Query 360 A-GA--ATTCTAGGGTTTCCCGATTACGACGAGGC-GTTATCTGTGAAGCTCAGGACACT 415 | | || |||||||||| ||||| ||| || || || |||||||||| ||||| ||| Sbjct 266 ATCATCATCCTAGGGTTTCTCGATTGCGAAGA-GCTGTCGTCTGTGAAGCCCAGGAAACT 324 Query 416 GCTACAGGA-ATTCCAGTGGTCAACGATTCAACATGGGACTCTCTAGTTCTCAAGGCTGA 474 |||| || |||||||||||||| || ||||||||||||||||||||||| ||||| || Sbjct 325 ACTAC-CGATATTCCAGTGGTCAATGACTCAACATGGGACTCTCTAGTTCTTAAGGCAGA 383 Query 475 TGAGCCTGTGTTTGTCGACTTTTGGGCACCATGGTGTGGACCCTGCAAAATGATTGATCC 534 || |||||| || ||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct 384 TGGGCCTGTATTGGTCGACTTTTGGGCACCATGGTGTGGACCTTGCAAGATGATTGA-CC 442 Query 535 CAT-T-GTCAACGAACTCGCGCAA-AAGTACGCCGGCCAGTTCAAGTTCTACAAACTTAA 591 | | | || || || || || ||| || ||| |||| || |||||||||||||||| || Sbjct 443 C-TCTCGTGAATGATCTAGCACAACAA-TACACCGGGAAGATCAAGTTCTACAAACTAAA 500 Query 592 CACTGATGAGTCTCCTGCAACCCCTGGCCAGTATGGTGTTAGAAGCATCCCAACTATCAT 651 ||| ||||| |||||| ||||||| |||||||||| ||||||||||||||||| ||||| Sbjct 501 CACCGATGAATCTCCTTCAACCCCAAGCCAGTATGGAGTTAGAAGCATCCCAACGATCAT 560 Query 652 GATCTTTGTCAATGGTGAGAAGAAGGATACAATCATCGGTGCTGT-CTCTAAAG--ACAC 708 ||||||||||||||| |||||||||||||||||||| ||||| || | | ||| |||| Sbjct 561 GATCTTTGTCAATGGCGAGAAGAAGGATACAATCATAGGTGCAGTGC-CAAAAACCACAC 619 Query 709 TTTAGCAACCAGCATCAACAAATTCTTGTAATGAA 743 | | || | ||||| |||| |||||| |||||| Sbjct 620 TC-A-CATCTAGCATTGACAAGTTCTTGCAATGAA 652 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33738781545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5