BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03710.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470343 jgi|Araly1|470343|fgenesh2_kg.1__297__AT1G03710.1 665 0.0
> Ahg470343 jgi|Araly1|470343|fgenesh2_kg.1__297__AT1G03710.1
Length=770
Score = 665 bits (360), Expect = 0.0
Identities = 457/502 (91%), Gaps = 14/502 (3%)
Strand=Plus/Plus
Query 175 GGATGCGAGGAAGAGGAGAGAAACAGTGAAAGCGATGACCAGGTTTGGGGTTTCGATAGT 234
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 168 GGATGCGAGGAAGAGGAGAGAAACAGTGAAAGCGACGACCAGGTTTGGGGTTTCGATAGT 227
Query 235 TTCGAAGGCTCAGACTACGAGTCGCCTGATGAGCCTCCTGAGGATGATGAGGAA-TTGGA 293
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||| || ||
Sbjct 228 TTCGAAGGATCAGACTACGAGTCGCCTGATGAGCCTCCCGAGGATGACGAGGAACTT-GA 286
Query 294 GTTTCGTCGATACACGCGCTATTACCACGAGAGCAAGGGTTTCAAAGT-G-----GATAA 347
||| ||||||||||||||| |||||||||||||| ||||||||||||| | |||||
Sbjct 287 GTTACGTCGATACACGCGCCATTACCACGAGAGCCAGGGTTTCAAAGTGGATAAAGATAA 346
Query 348 GCTTCCTAAACATGTTTGTTACGGAATACGCCCTCTCGATCTGGATGCCCCCTTCTTCAA 407
||| |||||| || || ||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 347 GCTGCCTAAATATCTTACTTACGGATTACGCGGTCTCGATCTGGATGCCCACTTCTTCAA 406
Query 408 GCCAAACATGACGGGGCGTGACTACATGGAGATTATGGCCAATGTGGCTATTGACAAATA 467
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 407 GCCAAACCTCACGGGGCGTGAGTACATGGAGATTATGGCCAATGTGGCTATTGACAAATA 466
Query 468 CAACCAAGTAGAGAATAAGACG-TTAAAGCTTGATCATATCGTGAGGGT-GACGGTGCAA 525
|||||||||||||||||||||| ||| |||||||||||| |||||||| | |||||||
Sbjct 467 CAACCAAGTAGAGAATAAGACGGTTAC-GCTTGATCATATAGTGAGGGTCGT-GGTGCAA 524
Query 526 TTGAGCTATGGA-TACAAAGCTTATATTACATTCATGGCTAAGGAATCTCCTCATGGAGA 584
||||||||||| | ||||| ||||||||| |||||||||||||| || ||| | |||||
Sbjct 525 ATGAGCTATGGAAT-CAAAGGTTATATTACTTTCATGGCTAAGGAGTCCCCTGAAGGAGA 583
Query 585 GCTTGTGGAGTATCAAGCTAAGGCTGAGCGCAAGGCATGGCAAAGAAACATTCACCCCAT 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 584 GCTTGTGGAGTATCAAGCTAAGGCTGAGCGCAAGGCATGGCAAAGAAACATTCATCCCAT 643
Query 645 CTTTTGCAGACCAGCTCGCTCT 666
||||||||||||||||| ||||
Sbjct 644 CTTTTGCAGACCAGCTCCCTCT 665
Score = 102 bits (55), Expect = 4e-21
Identities = 142/178 (80%), Gaps = 29/178 (16%)
Strand=Plus/Plus
Query 59 GGGAAAAAATGGATCCCAAATCCAGTGATGTCGATACGGTTGAGCCCGAGGTGATGGACG 118
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 1 GGGAAAGAATGGATCCCAAATCCAGTGATGTCGATACGATTGAGCCGGAGGTGATGGATG 60
Query 119 CA----G-----ATCTCTCTT--T---G---AAA-CGCAAGGCCGAAACGATTG-AGCCG 159
|| | ||||||||| | | ||| |||||||||||||||||| | |||
Sbjct 61 CATCTTGCTCGGATCTCTCTTCGTCTTGTGGAAAACGCAAGGCCGAAACGATTTCA-CCG 119
Query 160 GCGGATTCCGATGAAGGATGCGAGGAAGAGGAGAGAAACAGTGAAAGCGATGACCAGG 217
| || || | ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 120 G---AT---GA--A-GGATGCGAGGAAGAGGAGAGAGACAGTGAAAGCGACGACCAGG 168
Score = 71.3 bits (38), Expect = 1e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 776 AATGCCCTATGTACTCAAGCTTTTATGATCAGAACTCGATTTATGTT 822
||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 724 AATGCCCTATGGACTAAAACTTTTATGATCAGAACTCGATTTATGTT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5