BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G04070.1

Length=634
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919082 jgi|Araly1|919082|scaffold_100363.1                        457    5e-128


> Ahg919082 jgi|Araly1|919082|scaffold_100363.1
Length=333

 Score =  457 bits (247),  Expect = 5e-128
 Identities = 292/314 (93%), Gaps = 2/314 (1%)
 Strand=Plus/Plus

Query  63   TTCAATCAATGGCGCCTAAGAAAATCGGAGCCGGCAAAG-GCGATTCGAGCATCTTGGCG  121
            |||||||||||||||||||||||||||||||||||   | | ||||||||||||||||||
Sbjct  21   TTCAATCAATGGCGCCTAAGAAAATCGGAGCCGGC-GGGAGAGATTCGAGCATCTTGGCG  79

Query  122  AAGATTTCAAACTACGATATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCCGTCTAC  181
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct  80   AAGATTTCAAACTACGAAATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCTGTCCAC  139

Query  182  GTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTT  241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  140  GTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTG  199

Query  242  CTCATCCTTGCCGTGCCTTTGATCTTAGAGTTGGAGCAAGATCATCGATTAGGCGAGATA  301
            |||||||||| ||| ||||||||||||||||||||| ||||||| | || | ||||| | 
Sbjct  200  CTCATCCTTGTCGTCCCTTTGATCTTAGAGTTGGAGAAAGATCAGCAATCAAGCGAGTTT  259

Query  302  GATTTTGAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCTCTAAAGTAAC  361
            || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  260  GAGTTTCAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCACTAAAGTAAC  319

Query  362  TTTAGAAACCCTAA  375
            | ||||||||||||
Sbjct  320  TGTAGAAACCCTAA  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23216856453


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5