BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04070.1 Length=634 Score E Sequences producing significant alignments: (Bits) Value Ahg919082 jgi|Araly1|919082|scaffold_100363.1 457 5e-128 > Ahg919082 jgi|Araly1|919082|scaffold_100363.1 Length=333 Score = 457 bits (247), Expect = 5e-128 Identities = 292/314 (93%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 63 TTCAATCAATGGCGCCTAAGAAAATCGGAGCCGGCAAAG-GCGATTCGAGCATCTTGGCG 121 ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| Sbjct 21 TTCAATCAATGGCGCCTAAGAAAATCGGAGCCGGC-GGGAGAGATTCGAGCATCTTGGCG 79 Query 122 AAGATTTCAAACTACGATATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCCGTCTAC 181 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || Sbjct 80 AAGATTTCAAACTACGAAATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCTGTCCAC 139 Query 182 GTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTT 241 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 GTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTG 199 Query 242 CTCATCCTTGCCGTGCCTTTGATCTTAGAGTTGGAGCAAGATCATCGATTAGGCGAGATA 301 |||||||||| ||| ||||||||||||||||||||| ||||||| | || | ||||| | Sbjct 200 CTCATCCTTGTCGTCCCTTTGATCTTAGAGTTGGAGAAAGATCAGCAATCAAGCGAGTTT 259 Query 302 GATTTTGAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCTCTAAAGTAAC 361 || ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 260 GAGTTTCAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCACTAAAGTAAC 319 Query 362 TTTAGAAACCCTAA 375 | |||||||||||| Sbjct 320 TGTAGAAACCCTAA 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23216856453 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5