BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04250.1 Length=1087 Score E Sequences producing significant alignments: (Bits) Value Ahg470401 jgi|Araly1|470401|fgenesh2_kg.1__355__AT1G04250.1 1672 0.0 Ahg477742 jgi|Araly1|477742|fgenesh2_kg.3__443__AT3G04730.1 80.5 2e-14 Ahg932229 jgi|Araly1|932229|scaffold_400217.1 71.3 1e-11 > Ahg470401 jgi|Araly1|470401|fgenesh2_kg.1__355__AT1G04250.1 Length=1037 Score = 1672 bits (905), Expect = 0.0 Identities = 1004/1050 (96%), Gaps = 14/1050 (1%) Strand=Plus/Plus Query 1 AGACAGAGATATAATACAGACTCATCTCACTTTGTATTATTTGAGTGTTTTTATAAAACC 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 AGACAGAGATATAATACAGACTCATATCACTTTGTATTATTTGAGTGTTTTTATAAAACC 60 Query 61 ATTTTTCCATCTTCCTCATCACCTTCCCAAGAAGAAGAACACCAAAGAAGAAGAAAGGTT 120 |||||||||| ||||||||||||||||| | |||||| | | ||| ||||||||| || Sbjct 61 ATTTTTCCATTTTCCTCATCACCTTCCC-A-AAGAAG-A-A--GAAG-AGAAGAAAGTTT 113 Query 121 AATAATGATGGGCAGTGTCGAGCTGAATCTGAGGGAGACTGAGCTGTGTCTTGGTCTTCC 180 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 114 AATAATGATGGGCAGTGTCGAGCTGAATCTGAAGGAGACTGAACTGTGTCTTGGTCTTCC 173 Query 181 CGGTGGAGATACAGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGA 240 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 CGGTGGAGATACGGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGA 233 Query 241 TCTGAAGCTAAATCTGAATAATGAGCCTGCAAACAAGGAAGGATCTACGACTCATGACGT 300 ||||||||| ||||| || |||||||||| |||||||||||| ||||||||||||||||| Sbjct 234 TCTGAAGCTGAATCTTAACAATGAGCCTGAAAACAAGGAAGGGTCTACGACTCATGACGT 293 Query 301 CGTGACTTTTGATTCCAAGGAGAAGAGTGCTTGTCCTAAAGATCCAGCCAAACCTCCGGC 360 |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| | Sbjct 294 CGTGACTTTTGATTCCAAGGAGAAGAGTTCTTGTCCCAAAGATCCAGCCAAGCCTCCTTC 353 Query 361 CAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 CAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTC 413 Query 421 CTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTATCAATGGACGG 480 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 414 GTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTGTCAATGGACGG 473 Query 481 AGCACCGTACTTGAGGAAAATCGATTTGAGGATGTATAAAAGCTACGATGAGCTTTCTAA 540 ||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||| Sbjct 474 AGCACCGTACTTGAGGAAAGTAGATTTGAGGATGTATAAAAGCTACGACGAGCTCTCTAA 533 Query 541 TGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGCAAACATGGAGGAGAAGAAGGAAT 600 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 534 TGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGAAAACATGGAGGAGAAGAAGGAAT 593 Query 601 GATAGACTTCATGAATGAGAGGAAATTGATGGATTTGGTGAATAGCTGGGACTATGTTCC 660 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 594 GATAGACTTCATGAATGAGAGGAAATTGATGGATTTAGTGAATAGTTGGGACTATGTTCC 653 Query 661 CTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 CTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTT 713 Query 721 CGTCGATACATGCAAGCGTTTACGTCTCATGAAAGGATCGGATGCCATTGGTCTCGCTCC 780 ||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct 714 CGTTGATACATGCAAGCGTTTACGTCTCATGAAAGGATCTGATGCCATTGGGCTCGCACC 773 Query 781 GAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGAAGTCAAATTAAAAGGATAAGTGGT-A 839 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | Sbjct 774 GAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGAAGTC--A--AAAAGGATAAGTGGTAA 829 Query 840 TCGATTATATATTTGATTAACACATTGATTGGTGTTAATTGCTCttttttttCTTACGAT 899 | ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 830 T-GATTATATATTTGATTAACACATTGATTGGTGTTAATTG-TTTTTTTTTTCTTACGAT 887 Query 900 GAAATACATTGTTCAGTTTCTTTTGATTGTCTGTGTTTTGATCTGGATTTGGTATGTAGA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 GAAATACATTGTTCAGTTTCTTTTGATTGTCTGTGTTTTGATCTGGATTTGGTATGTAGA 947 Query 960 TATAGTTTGTATGCTATTATGTGTAATGAACTTAAGTTAAATATTTGAGACATTTGTAAT 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 TATAGTTTGTATGCTATTATGTGTAATGAACTTAAGTTAAATATTTGAGACATTTGTAAT 1007 Query 1020 GGAAAATGTGTAATAATTTGAACATCCTAT 1049 |||||||||||||||||||||||||| ||| Sbjct 1008 GGAAAATGTGTAATAATTTGAACATCTTAT 1037 > Ahg477742 jgi|Araly1|477742|fgenesh2_kg.3__443__AT3G04730.1 Length=1201 Score = 80.5 bits (43), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 5/82 (6%) Strand=Plus/Plus Query 350 AAACCTCCGGCCAAGGCACAAGTTGTGGGATGGCCACCGGTGA-GATCATACCGGAAGAA 408 ||||| || |||||||||||||||||||||||||||||||| | |||| | ||| ||||| Sbjct 361 AAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGT-ACGATCTTTCCGCAAGAA 419 Query 409 CGTGATGGTTTCCTGCCAAAAA 430 ||| ||| | || |||||||| Sbjct 420 CGTCATG-T--CCGGCCAAAAA 438 > Ahg932229 jgi|Araly1|932229|scaffold_400217.1 Length=982 Score = 71.3 bits (38), Expect = 1e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 663 CTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGG 712 |||||||||||||||||||||||||||||||||| || || || |||||| Sbjct 805 CTTATGAAGACAAAGACGGTGATTGGATGCTCGTTGGAGATGTCCCTTGG 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40486537854 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5