BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04400.2
Length=2264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470417 jgi|Araly1|470417|fgenesh2_kg.1__371__AT1G04400.1 3378 0.0
> Ahg470417 jgi|Araly1|470417|fgenesh2_kg.1__371__AT1G04400.1
Length=2435
Score = 3378 bits (1829), Expect = 0.0
Identities = 2024/2115 (96%), Gaps = 26/2115 (1%)
Strand=Plus/Plus
Query 157 GAACTATTC-TCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAGAGTGTG 215
|||||| || |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 328 GAACTA-TCTTCTGGAGGAGCTTGAGGTCTGAAATCATGGAAAAACTTGGTTAGAGTGTG 386
Query 216 GAATTTTAGCTGATTTGATCTTTGATTCATCTGTGATCATAATAACTATGAAGATGGACA 275
||| ||||||||||||| || ||||||||||| |||||||| |||||||| || |||||
Sbjct 387 GAA-TTTAGCTGATTTGGTC-TTGATTCATCTCTGATCATAGCAACTATGACGACGGACA 444
Query 276 AAAAGACTATAGTTTGGTTTAGAAGAGACCTAAGGATTGAGGATAATCCTGCATTAGCAG 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAAAGACTATAGTTTGGTTTAGAAGAGACCTAAGGATTGAGGATAATCCTGCATTAGCAG 504
Query 336 CAGCTGCTCACGAAGGATCTGTTTTTCCTGTCTTCATTTGGTGTCCTGAAGAAGAAGGAC 395
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CTGCTGCTCACGAAGGATCTGTTTTTCCTGTCTTCATTTGGTGTCCTGAAGAAGAAGGAC 564
Query 396 AGTTTTATCCTGGAAGAGCTTCAAGATGGTGGATGAAACAATCACTTGCTCACTTATCTC 455
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 AGTTTTATCCAGGAAGAGCTTCAAGATGGTGGATGAAACAATCACTTGCTCACTTATCTC 624
Query 456 AATCCTTGAAGGCTCTTGGATCTGACCTCACTTTAATCAAAACCCACAACACGA-TTTCA 514
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 625 AATCCTTGAAGGCTCTTGGATCTGACCTCACTTTAATCAAAACCCATAACAC-AGTTTCA 683
Query 515 GCGATCTTGGATTGTATCCGCGTTACCGGTGCTACAAAAGTCGTCTTTAACCACCTCTAT 574
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 684 GCTATCTTGGATTGTATCCGCGTTACTGGTGCTACAAAAGTCGTCTTTAACCATCTCTAT 743
Query 575 GATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAACGTGGGATC 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAACGTGGGATC 803
Query 635 TCTGTGCAAAGCTACAATGGAGATCTATTGTATGAACCGTGGGAGATATACTGCGAAAAG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TCTGTGCAAAGCTACAATGGAGATCTATTGTATGAACCGTGGGAGATATACTGCGAAAAG 863
Query 695 GGCAAACCTTTTACGAGTTTCAATTCTTACTGGAAGAAATGCTTAGATATGTCGATTGAA 754
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 864 GGCAAACCTTTTACGAGTTTCAGTTCTTACTGGAAGAAATGCTTAGATATGTCGATTGAA 923
Query 755 TCCGTTATGCTTCCTCCTCCTTGGCGGTTGATGCCAATAACTGCAGCGGCTGAAGCGATT 814
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 924 TCTGTTATGTTTCCTCCTCCTTGGCGGTTGATGCCAATAACTGCAGCGGCTGAAGCGGTT 983
Query 815 TGGGCGTGTTCGATTGAAGAACTAGGGCTGGAGAATGAGGCCGAGAAACCGAGCAATGCG 874
||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 984 TGGGCATGTTCGATTGAAGAACTAGGGCTAGAAAATGAGGCCGAAAAACCGAGCAATGCG 1043
Query 875 TTGTTAACTAGAGCTTGGTCTCCAGGATGGAGCAATGCTGATAAGTTACTAAATGAGTTC 934
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1044 TTGTTAACTAGAGCTTGGTCTCCAGGATGGAGCAATGCTGATAAGATACTTAATGAGTTC 1103
Query 935 ATCGAGAAGCAGTTGATAGATTATGCAAAGAACAGCAAGAAAG-TTGTTGGGAATTCTAC 993
|||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||| ||
Sbjct 1104 ATCGAGAAGCAGCTGATAGATTACGCAAAGAACAGCAA-AAAGGTTGTTGGGAATTCAAC 1162
Query 994 TTCACTACTTTCTCCGTATCTCCATTTCGGGGAAATAAGCGTCAGACACGTTTTCCAGTG 1053
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CTCACTGCTATCTCCATATCTCCATTTCGGGGAAATAAGCGTCAGACACGTTTTCCAGTG 1222
Query 1054 TGCCCGGATGAAACAAATTATATGGGCAAGAGATAAGAACAGTGAAGGAGAAGAAAGTGC 1113
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1223 TGCCCGGATGAAACAAATCATATGGGCTAGAGATAAGAACAGTGAAGGAGAAGAAAGTGC 1282
Query 1114 AGATCTTTTTCTTAGGGGAATCGGTTTAAGAGAGTATTCTCGGTATATATGTTTCAACTT 1173
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1283 AGATCTTTTTCTTAGAGGAATCGGTCTAAGAGAGTATTCTCGGTATATATGTTTCAACTT 1342
Query 1174 CCCGTTTACTCACGAGCAATCGTTGTTGAGTCATCTTCGGTTTTTCCCTTGGGATGCTGA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 CCCGTTTACTCACGAGCAATCGTTGTTGAGTCATCTTCGGTTTTTCCCTTGGGATGCTGA 1402
Query 1234 TGTTGATAAGTTCAAGGCCTGGAGACAAGGCAGGACCGGTTATCCGTTGGTGGATGCCGG 1293
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1403 TGTTGATAAGTTCAAGGCCTGGAGACAAGGCAGGACTGGTTATCCGTTGGTGGATGCCGG 1462
Query 1294 AATGAGAGAGCTTTGGGCTACCGGATGGATGCATAACAGAATAAGAGTGATTGTTTCAAG 1353
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1463 AATGAGAGAGCTTTGGGCTACTGGATGGATGCATAACAGAATAAGAGTGATTGTTTCTAG 1522
Query 1354 CTTTGCTGTGAAGTTTCTTCTCCTTCCATGGAAATGGGGAATGAAGTATTTCTGGGATAC 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 CTTTGCTGTGAAGTTTCTTCTCCTTCCATGGAAATGGGGAATGAAGTATTTCTGGGATAC 1582
Query 1414 ACTTTTGGATGCTGATTTGGAATGTGACATCCTTGGCTGGCAGTATATCTCTGGGAGTAT 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1583 ACTTTTGGATGCTGATTTGGAATGTGACATCCTTGGCTGGCAGTATATCTCTGGGAGCAT 1642
Query 1474 CCCCGATGGCCACGAGCTTGATCGCTTGGACAATCCCGCGTTACAAGGCGCCAAATATGA 1533
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1643 ACCCGATGGCCATGAGCTTGATCGCTTGGACAATCCCGCGTTACAAGGCGCTAAATATGA 1702
Query 1534 CCCAGAAGGTGAGTACATAAGGCAATGGCTTCCCGAGCTTGCGAGATTGCCAACTGAATG 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CCCAGAAGGTGAGTACATAAGGCAATGGCTTCCCGAGCTTGCGAGATTGCCAACTGAATG 1762
Query 1594 GATCCATCATCCATGGGACGCTCCTTTAACCGTACTCAAAGCTTCTGGTGTGGAACTCGG 1653
||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1763 GATACATCATCCATGGGACGCTCCGTTAACCGTACTCAAAGCTTCCGGGGTGGAACTCGG 1822
Query 1654 AACAAACTATGCGAAACCCATTGTAGACATCGACACAGCTCGTGAGCTACTAGCTAAAGC 1713
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1823 AACAAACTATGCAAAACCCATTGTAGACATCGACACAGCTCGTGAGCTACTCGCTAAAGC 1882
Query 1714 TATTTCAAGAACCCGTGAAGCACAGATCATGATCGGAGCAGCACCTGATGAGATTGTAGC 1773
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 CATATCAAGAACCCGTGAAGCACAGATCATGATCGGAGCAGCACCTGATGAGATTGTAGC 1942
Query 1774 AGATAGCTTCGAGGCCTTAGGGGCTAATACCATTAAAGAACCTGGTCTTTGCCCATCTGT 1833
||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1943 AGATAGCTTTGAGGCCTTAGAAGCTAATACAATTAAAGAACCTGGTCTTTGCCCATCTGT 2002
Query 1834 GTCTTCTAATGACCAACAAGTACCTTCGGCTGTTCGTTACAACGGGTCAAAGAGAGTGAA 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 GTCTTCTAATGACCAACAAGTACCTTCGGCTGTTCGTTACAACGGGTCAAAGAGAGTGAA 2062
Query 1894 ACCTGAGGAAGAAGAAGAGAGAGACATGAAGAAATCTAGGGGATTCGATGAAAGGGAGTT 1953
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2063 ACCTGGGGAAGAAGAAGAGAGAGACATGAAGAAATCTAGAGGATTCGATGAAAGGGAATT 2122
Query 1954 GTTTTCGACTGCTGAATCTTCTTCTTCTTCGAGTGTGTT-TTTCGTTTCGCAGTCTTGCT 2012
||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 2123 GTTTTCGACTGCTGAATCTTCTTCTTCTTCGAGTGTGTTCTTT-GTTTCGCATTCTTGCT 2181
Query 2013 CGTTGGCATCAGAAGGGAAGAATCTGGAAGGTATTCAAGATTCATCTGATCAGATTACTA 2072
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 2182 CGTTGGCATCAGAAGGGAAGAATTTGGAAGGTATTCAAGATTCATCTGATCAGCTTACCA 2241
Query 2073 CAAGTTTGGGAAAAAATGGTTGCAAATGATCAAAATAA--T----GTGCTGTTATAAAGC 2126
||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2242 CAAGTATGGGAAAAAATGGTTGCAAATGATCAAAATAAGCTTTATGTGCTGTTATAAAGC 2301
Query 2127 CTAACATGTAGATGTGTGAATGTGTCTT----TT--AACTCT-TTGTTTCCTTTTGGTTA 2179
|||||||||||||||||||||||||||| || |||||| || |||||||||| |||
Sbjct 2302 CTAACATGTAGATGTGTGAATGTGTCTTGAAGTTTTAACTCTCTT-TTTCCTTTTGCTTA 2360
Query 2180 TACTCAAAAGGATAT--GATTGCATAAACATATAATGCTGATATTATTTCAATTGGCTAT 2237
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2361 TACTCAAAAGGATATATGGTTGCATAAACATATAATGCTGATATTATTTCAATTGGCTAT 2420
Query 2238 GAATAAAATATACAT 2252
||||||| |||||||
Sbjct 2421 GAATAAATTATACAT 2435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85245968310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5