BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04530.1 Length=1352 Score E Sequences producing significant alignments: (Bits) Value Ahg470433 jgi|Araly1|470433|fgenesh2_kg.1__387__AT1G04530.1 1685 0.0 > Ahg470433 jgi|Araly1|470433|fgenesh2_kg.1__387__AT1G04530.1 Length=1286 Score = 1685 bits (912), Expect = 0.0 Identities = 1046/1110 (94%), Gaps = 12/1110 (1%) Strand=Plus/Plus Query 5 TCTTCGTTTGGTCGTTGTCTTGGGGTCCTCCGAATCAAGAACCCACAAATAACAATCGAG 64 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 1 TCTTCGTTCGGTCGTTGTCTTGGGGTCCTCCGAATCAA-AACCCACAAATAACACTCGAG 59 Query 65 GAATCTGTGAACGACGACCCAATTGAACCTAAAGTTGAAGACTTTGGACGGATTTAGAAA 124 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 60 GAATCTGTGAACGACGACCCAATTGAACCTAAAGTTGAAGACTTTGAACGGATTTAGAAA 119 Query 125 GAAAGACCCAAAAAGATGCTGAAGAGCGAGGCATCTCTCTCGATTTACTGCGACTCTGGA 184 |||| || |||||||||||||||||||||||| |||||||||| ||||||||| || ||| Sbjct 120 GAAAAACACAAAAAGATGCTGAAGAGCGAGGCCTCTCTCTCGAGTTACTGCGATTCCGGA 179 Query 185 GATGGGTTCAAATCCGAAGATCCGGTGACTGGAATCGAGGAGAATTTGGAGAGAACGGTT 244 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 180 GATGGGTTCAAATCCGAAGATCCGTTGACTGGAATCGAGGAGAATTTGGAGAGAACCGTT 239 Query 245 ACGATTGGTGATGCTATTGACGGCGGCGAGTTCAGTTTTGCGAAACACAAGGAAGAAGAT 304 |||||||| ||| |||| ||||||| || ||||||||||||||||||||||||||||||| Sbjct 240 ACGATTGGCGATTCTATCGACGGCGACGGGTTCAGTTTTGCGAAACACAAGGAAGAAGAT 299 Query 305 AGTGGTGAAGGTGAGAGAGGTGTTTTTGAAGAGGTTATTAAGAAGCTTGGGATTGGTGTG 364 || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| | Sbjct 300 AGCAGTGAAGGTGAGAGAGGTGTTTTGGAAGAGGTTATTAAGAAGCTAGGGATTGGTAAG 359 Query 365 AGAGATGAACTAGGTTTTGAGATTGAAAGACCACCAAGCCCTCCTATGCATTTAGCTGCA 424 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 AGAGATGAACAAGGTTTTGAGATTGAAAGACCACCAAGTCCTCCTATGCATTTAGCTGCA 419 Query 425 GGGTTAGGAATTGATAAGTTTGATTTGTATGGTAGTGAGATC-AAATTCGATTTGCCGGG 483 |||||||| ||||||||||||||||||||||||| ||||| | |||||||| || ||||| Sbjct 420 GGGTTAGGTATTGATAAGTTTGATTTGTATGGTAATGAGA-CGAAATTCGACTTACCGGG 478 Query 484 TTACGATGATAAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCA 543 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TTTCGATGATGAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCA 538 Query 544 TCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGC 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGC 598 Query 604 AGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTAGTGATGGAGTAGCTTTAGCAAA 663 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 599 AGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTTGTGATGGAGTAGCTTTAGCAAA 658 Query 664 CTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGA 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGA 718 Query 724 ACGTGCAGTTCAAGCATCTCCTGATGATAGCATTGTTCTTGCAGCATATGCTAGTTTCCT 783 ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| Sbjct 719 ACGTGCAGTTCAAGCTTCTCCTGATGATAGCAATGTTCTTGGAGCATATGCTAGTTTCCT 778 Query 784 CTGGGAGATAAACGCGgatgatgatgatgaggatgatgatgaggatgatgatgaGTCTTC 843 |||||||||||||| |||||| || ||||||||||||||||| |||||| | ||||| Sbjct 779 CTGGGAGATAAACGTGGATGACGACGATGAGGATGATGATGA---TGATGA-G--TCTTC 832 Query 844 TGGACAAGGAAAAGACGAATTTGAGGCTGATGCAGCGG-GAAAAGGCAAATCAAGCTTGT 902 ||| ||||||||||| ||||||||| |||||||||||| |||||| ||| || ||||||| Sbjct 833 TGGGCAAGGAAAAGAAGAATTTGAGCCTGATGCAGCGGAGAAAAG-CAACTCGAGCTTGT 891 Query 903 CCAAGACAGAAGATGGAGAAACGCTATGCAGATACGCGAAGGCGTTCTGGAGTATTAATA 962 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 892 CCAAGACAGATGATGGAGAAACGCTATGCAGATACGCGAAAGCGTTCTGGAGTATAAATA 951 Query 963 ATGACCATGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGATA 1022 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 952 ATGACCACGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGACA 1011 Query 1023 GCATTATTCTTGGAGAGTACGCTCGGTTCTTATGGGAAATAGATGAATGACCATCAAGAA 1082 ||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| ||||| Sbjct 1012 GCATTATTCTTGGAGAGTATGCTCGGTTTTTATGGGAAATAGAAGAATGATCATTAAGAA 1071 Query 1083 GAGAA-GAAGATGTCTATAGCTGAGGTAAA 1111 ||||| |||||||||||||||||||||||| Sbjct 1072 GAGAAAGAAGATGTCTATAGCTGAGGTAAA 1101 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50589110859 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5