BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04540.1 Length=1806 Score E Sequences producing significant alignments: (Bits) Value Ahg470434 jgi|Araly1|470434|fgenesh2_kg.1__388__AT1G04540.1 1557 0.0 > Ahg470434 jgi|Araly1|470434|fgenesh2_kg.1__388__AT1G04540.1 Length=1734 Score = 1557 bits (843), Expect = 0.0 Identities = 1021/1107 (92%), Gaps = 12/1107 (1%) Strand=Plus/Plus Query 1 ATGTCGATGATGTTCCCATCGTTTCAGTTGCTAGAACTTAACATAATATCAGCTCAGGAC 60 ||||||||| |||||||||| |||||||||||||| || |||||||| |||||||||||| Sbjct 1 ATGTCGATGTTGTTCCCATCATTTCAGTTGCTAGAGCTGAACATAATCTCAGCTCAGGAC 60 Query 61 TTGGCTCCCGTCGCACGCAAGACAAAGACTTATGCGGTTGCTTGGGTTCATTCCGAACGT 120 |||||||| ||||| ||||| |||||||||||||| || ||||||||||||||||| ||| Sbjct 61 TTGGCTCCTGTCGCTCGCAAAACAAAGACTTATGCTGTCGCTTGGGTTCATTCCGAGCGT 120 Query 121 AAACTTACCACCCGTGTCGACTATAATGGCGGAACAAACCCAACTTGGAACGACAAATTC 180 |||||||| || ||||||||||| ||||| ||||| |||||||||||||| ||||||||| Sbjct 121 AAACTTACTACACGTGTCGACTACAATGGTGGAACGAACCCAACTTGGAATGACAAATTC 180 Query 181 GTATTCAGAGTCAACGAAGAATTTCTCTACGCTGATACTTCAGCAGTGGTTATCGAAATA 240 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 181 GTATTCAGAGTCAACGAAGAATTTCTCTACGCCGATACTTCAGCTGTGGTTATTGAAATT 240 Query 241 TACGCCTTGCATTGGTTCAGAGATGTTCATGTAGGAACAGTTCGTGTCCTCATTAGCAAC 300 |||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| Sbjct 241 TACGCCTTGCATTGGTTCCGAGATGTTCATGTAGGAACAGTTCGTGTCCTCGTCAGCAAT 300 Query 301 CTCATTCCTCCTAATCGCCGTCCAGGATACAGAACCAGCAACAATGAATATCGTCGTACC 360 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 301 CTCATTCCCCCTAATCGTCGTCCAGGATACAGAACCAGCAACAATGAATATCGTCGCACC 360 Query 361 CCACCTCCAGGAATGAGATTTGTTGCGCTTCAAGTTCGTCGTACTTCAGGTCGACCTCAG 420 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 361 CCACCTCCAGGAATGAGATTTGTCGCACTTCAGGTTCGTCGTACTTCAGGTCGACCTCAG 420 Query 421 GGGATTTTGAACATTGGTGTTGGATTAATTGATGGTTCTATGCGGAGTATGCCGCTTTAT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGGATTTTGAACATTGGTGTTGGATTAATTGATGGTTCTATGCGGAGTATGCCGCTTTAT 480 Query 481 ACGCATATGGATTCATCTGCTGTGGGATATAGAGATTTGCTCGGAGAAGAAGATCATCAT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ACGCATATGGATTCATCTGCTGTGGGATATAGAGATTTGCTCGGAGAAGAAGATCATCAT 540 Query 541 CTACAACATTTGCATTTAAATAGCAACAAAGGGAGCTCAAAGAATCCACAATCTCCATCT 600 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 541 CTGCAACATTTGCATTTAAATAGCAACAAAGGCAGCTCAAAGAATCCACAATCTCCGTCT 600 Query 601 TCTCGACAGTACCAATCCGTAATCTCAAGGCCTGAGCTCCGTCGTACGAAGAGCGATACA 660 |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 601 TCTCGACAATACCAATCCGTAATCTCAAGACCTGAGCTCCGTCGTACGAAGAGCGATTCA 660 Query 661 AGTTCTATGGTTGTTTCGGATCTTCTTAGCAGGGCTGAACGGAGTCGTTTAGCTAATAGA 720 ||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||| Sbjct 661 AGTTCTATGGTTGTTTCAGATCTTCTTAGTAGAGCTGAACGAAGTCGTTTAGCTAACAGA 720 Query 721 CAACCAGCGAGTGCAATAGTGAGCAGTGAATCTGAAACTCTTCCCACCACGACAGATTCT 780 |||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 721 AAACCGGCGAGTGCATTAGTGAGCAGTGACTCTGAAACTCTACCCACCACGACGGATTCT 780 Query 781 GATGAGAAAAAA-TCGAGTGAGTATACACCTCCTAGTAAAAACCTTAGAG-TTCCAAGGC 838 |||||||||||| | || |||||| | ||||||||||||||||| || || ||||||||| Sbjct 781 GATGAGAAAAAAAT-GAATGAGTACATACCTCCTAGTAAAAACCCTA-AGGTTCCAAGGC 838 Query 839 AACGATACAATTCGATTGAATCAGATCTCATAAATCCGTCGCCAATGGAGAA-CCACCAT 897 ||||||||||||||||||| |||||||||||| || |||||||||||||||| || |||| Sbjct 839 AACGATACAATTCGATTGATTCAGATCTCATAGATTCGTCGCCAATGGAGAAACC-CCAT 897 Query 898 GTGGT-AGTGTC-GAGAAGGGAGAGACATGATGTTATGCCGTATAGTTCGTATCAACAAA 955 ||||| | || | ||||| ||||| || |||||||||||||||| ||||||||| ||| Sbjct 898 GTGGTGA-TG-CAGAGAAAAGAGAGGCACGATGTTATGCCGTATAATTCGTATCATCAAT 955 Query 956 CAGGTAAGACACCGAGGAAGAAGACAAGG-ATCGAGAAACAAAGATCAGTGAAAGATTAC 1014 || ||||||||||||| |||||||||| | | |||||||||||||||||||||||||||| Sbjct 956 CACGTAAGACACCGAGAAAGAAGACAATGTA-CGAGAAACAAAGATCAGTGAAAGATTAC 1014 Query 1015 GATCGTGGCCGAGCTTCCCCGTACTTATCGAAGCACGGAACACCATTGAGATCAAACATT 1074 |||||||||||| |||| ||||||||||||| | |||||||||| |||||||| ||||| Sbjct 1015 GATCGTGGCCGAACTTCACCGTACTTATCGAGGAACGGAACACCGTTGAGATCGAACATC 1074 Query 1075 ATCGCATCTACTCCGATGAGATCTAAC 1101 |||||||||||||| |||||||| ||| Sbjct 1075 ATCGCATCTACTCCTATGAGATCGAAC 1101 Score = 948 bits (513), Expect = 0.0 Identities = 582/616 (94%), Gaps = 2/616 (0%) Strand=Plus/Plus Query 1192 ATGCGGTCTAACATGGTTGGTTCGACTCCAATGAGATCAAACATCGTCGGATCAACCCCG 1251 |||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||| Sbjct 1120 ATGCGGTCCAACATGGTTGGTTCGACTCCGAGGAGATCAAACATCGTCGGATCTACCCCG 1179 Query 1252 ATCCGATCAAACTACATGGCTACACCGATGAGAACTCATCACGATTTTGGTACACCAGTG 1311 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1180 ATCCGTTCAAACTATATGGCTACACCGATGAGAACTCATCACGATTTTGGTACACCAGTG 1239 Query 1312 AGGAATTTAGCTGGAAGACGAATCTTAACTGAATCGGAGTTAGGACCATCGCCATCTGAA 1371 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1240 AGGAATTTAGCTGGAAGACGAATCCTAACTGAATCGGAGTTAGGTCCATCGCCATCTGAA 1299 Query 1372 GTGGCTGACAAATTGGCGAAAGATAGATCGCACGAAACGGAAAGTTCAATACTCAGCGAA 1431 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1300 GTGGCTGACAAATTGGCAAAAGATAGATCGCACGAAACAGAAAGTTCAATACTCAGCGAA 1359 Query 1432 TGGAGCATCGATGAATCTAGCATCGAAGGATTGCGATCAAAACTCGAGAGATGGCGAACA 1491 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1360 TGGAGCATCGATGAATCTAGCATCGAAGGATTGCGTTCAAAACTCGAGAGATGGCGAACA 1419 Query 1492 GAGCTTCCACCGTTGTACGACATAGGATCAAGCCATATAAGTAGCA-CTGATTACGATGG 1550 ||||||||||| || |||||||||||||||||||| |||||||||| | |||||||||| Sbjct 1420 GAGCTTCCACCATTATACGACATAGGATCAAGCCACATAAGTAGCAGCA-ATTACGATGG 1478 Query 1551 CGCGAGCGTTCCAGCTGCAACTGCCGGGGGAGGAATGAGTTCAAGACGGAAAACTCCGAC 1610 || || ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1479 TGCAAGTGTTCCCGCCGCAACTGCCGGGGGAGGAATGAGTTCAAGACGGAAAACTCCGAC 1538 Query 1611 GACGAAAAAGCATAACCGCCGTCACACAGATGGAGGTAATGGACTTTTCTCGTGTTTTAG 1670 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1539 GGCAAAAAAGCATAACCGCCGTCACACAGATGGAGGTAATGGACTTTTCTCGTGTTTTAG 1598 Query 1671 TAAGATTTGTGGTGTGGAATGCAGTTTCGTATGCGGTGGTGGTGGTGGGCCGATGGTCTC 1730 ||||||||| || ||||||||||||||||||||||||||||||||||| | |||| ||| Sbjct 1599 TAAGATTTGCGGCGTGGAATGCAGTTTCGTATGCGGTGGTGGTGGTGGTCAAATGGCCTC 1658 Query 1731 AGAAGGATCTACTAAGAAAGGTGGAGCCGGACGTGTGCAACGCACATATTCCGCTGACGA 1790 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1659 TGAAGGATCTACCAAGAAAGGTGGGGCCGGACGTGTGCAACGCACATATTCCGCTGACGA 1718 Query 1791 TCTGAGCTTTGTGTGA 1806 | |||||||||||||| Sbjct 1719 TTTGAGCTTTGTGTGA 1734 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67800636100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5