BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04550.2
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470436 jgi|Araly1|470436|fgenesh2_kg.1__390__AT1G04550.2 1598 0.0
Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1 429 2e-119
> Ahg470436 jgi|Araly1|470436|fgenesh2_kg.1__390__AT1G04550.2
Length=1153
Score = 1598 bits (865), Expect = 0.0
Identities = 982/1038 (95%), Gaps = 10/1038 (1%)
Strand=Plus/Plus
Query 176 GTATCATTGGAGTCTAGGGTTTTGTTATTGACATGCGTGGTGTGTCAGAATTGGAGGTGG 235
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 116 GTATCTTTGGAGTCTAGGGTTTTGTTATTGACATGCGTGGTGTTTCAGAATTGGAGGCGG 175
Query 236 GGAAGAGTAATCTTCCGGCGGAGAGTGAGCTGGAATTGGGATTAGGGCTCAGCCTCGGTG 295
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 176 GGAAGTGTAATCTTCCGGCTGAGAGTGAGCTGGAATTGGGATTAGGGCTCAGCCTCGGCG 235
Query 296 GTGGCGCGTGGAAAGAGCGTGGGAGGATTCTTACTGCTAAGGATTTTCCTTCCGTTGGGT 355
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 236 GTGGCGCGTGGAAAGAGCGTGGGAGGATTCTTACGGCTAAGGATTTTCCTTCGGTTGGGT 295
Query 356 CTAAACGCTCTGCTGAATCTTCCTCTCACCAAGGAGCTTCTCCTCCTCGTTCAAGTCAAG 415
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 296 CTAAACGCTCTGCTGAGTCGTCCTCTCATCAAGGAGCTTCTCCTCCTCGTTCAAGTCAAG 355
Query 416 TGGTAGGATGGCCACCAATTGGGTTACACAGGATGAACAGTTTGGTTAATAACCAAGCTA 475
| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 356 TAGTGGGATGGCCACCAATTGGGTCACACAGGATGAATAGTTTGGTTAATAACCAAGCTA 415
Query 476 TGAAGGCAGCAAGAGCGGAAGAAGGAGACGGGGAGAAGAAAGTTGTGAAGAATGATGAGC 535
|||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 416 TGAAGGCAGCAAGAGCGGAAGAAGAAGACGGGGAGAAGAATGTCGTGAAGAATGATGAGC 475
Query 536 TCAAAGATGTGTCAATGAAGGTGAATCCGAAAGTTCAGGGCTTAGGGTTTGTTAAGGTGA 595
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 476 TCAAAGATGTGTCAATGAAGGTGAATGGGAAAGTTCAGGGCTTAGGGTTTGTTAAGGTGA 535
Query 596 ATATGGATGGAGTTGGTATAGGCAGAAAAGTGGATATGAGAGCTCATTCGTCTTACGAAA 655
||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||
Sbjct 536 ATATGGATGGAGTTGGTATAGGCCGAAAAGTGGATATGAGAGCCCAGTCCTCTTACGAAA 595
Query 656 ACTTGGCTCAGACGCTTGAGGAAATGTTCTTTGGAATGACAGGTACTACTTGTCGAGAAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 ACTTGGCTCAGACGCTTGAGGAAATGTTCTTTGGAATGACAGGTACTACTTCTCGAGAAA 655
Query 716 AGGTTAAACCTTTAAGGCTTTTAGATGGATCATCAGACTTTGTACTCACTTATGAAGATA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGGTTAAACCTTTAAGGCTTTTAGATGGATCATCAGACTTTGTACTCACTTATGAAGATA 715
Query 776 AGGAAGGGGATTGGATGCTTGTTGGAGATGTTCCATGGAGAATGTTTATCAACTCGGTGA 835
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 716 AGGAAGGCGATTGGATGCTTGTGGGCGATGTTCCATGGAGAATGTTTATCAACTCGGTGA 775
Query 836 AAAGGCTTCGGATCATGGGAACCTCAGAAGCTAGTGGACTAGCTCCAAGACGTCAAGAGC 895
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 776 AAAGGCTTCGGATCATGGGAACCTCAGAAGCTAGTGGACTAGCTCCAAGACATCAAGAAC 835
Query 896 AGAAGGATAGACAAAGAAACAACCCTGTTTAGCTTCCCTTCCAAAGCTGGCATTGTTTAT 955
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 836 AGAAGGATAGACAAAGAAACAAACCTGTTTAGCTTCCCTTCCAAAGCTGGCATTGTTTAT 895
Query 956 GTATTGTTT--------GAGGTTTGCAA-TTTACTCGATACTTTTTGAAGAAAGTATTTT 1006
|| || ||| ||||||||||| ||||||| |||||||| |||||||||||
Sbjct 896 GTGTTTTTTTTTTTTTTGAGGTTTGCAAGTTTACTCAATACTTTTGGAAGAAAGTATAAC 955
Query 1007 GGAGAATATGGATAAAAGCATGCAGAAGCTTAGATATGATTTGAATCCGGTTTTCGGATA 1066
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 956 GGAGAATATGGATAAAAGCATGCAGAAGCTTAGATTTGATTTTAATCCGGTTTTCGGATA 1015
Query 1067 TGGTTTTGCTT-AGGTCATTCAATTCGTAGTTTTCCAGTTTGTTTCTTCTTTGGCTGTGT 1125
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGGTTTTTCTTTAGGTCATTCAATTCGTAGTTTTCCAGTTTGTTTCTTCTTTGGCTGTGT 1075
Query 1126 ACCAATTATCTATGTTCTGTGAGAGAAAGCTCTTGTTTATTTGTTCTCTCAGATTGTAAA 1185
||||||| ||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1076 ACCAATTGTCTCTGTTCTGAGAGAGAATGCTCTTGTTTATTTGTTCTCTCATATTGTAAA 1135
Query 1186 TAGTTGAAGTTATCTAAT 1203
||||||||||||||||||
Sbjct 1136 TAGTTGAAGTTATCTAAT 1153
> Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1
Length=1356
Score = 429 bits (232), Expect = 2e-119
Identities = 530/668 (79%), Gaps = 43/668 (6%)
Strand=Plus/Plus
Query 292 GGTGGTGGCGCGTGGAAAGAGCGTGGGAGGATTCTT-ACTGCTAAGGATTTTCCTTCCGT 350
||||||||||||||| ||||||||||||| || || || ||||||||||||||||| ||
Sbjct 443 GGTGGTGGCGCGTGGGGAGAGCGTGGGAGGCTT-TTGACGGCTAAGGATTTTCCTTCTGT 501
Query 351 TGGGTCTAAACGCTCTGCTGAATCTTCCTCTCA-CCAAGGAGCTTCTCCTCCTCGTTC-A 408
||| |||||||| ||||||| ||| | ||||| | || || |||||||||||||| |
Sbjct 502 TGGTTCTAAACGAGCTGCTGATTCTGCTTCTCATGC-TGGTGCATCTCCTCCTCGTTCAA 560
Query 409 --AGTCAAGTGGTAGGATGGCCACCAATTGGGTTACACAGGATGAACAGTTTGGTTAATA 466
|||||||| || |||||||| || | |||| ||| ||||||||||||||||||||||
Sbjct 561 GCAGTCAAGTTGTGGGATGGCCTCCTGTAGGGTCACATAGGATGAACAGTTTGGTTAATA 620
Query 467 ACCAAGCTATGAAGGCAGCAAGAGCGGAAGAAGGAGACG--GGGAGAA-GAAAGTTGTGA 523
||||||||| ||| | || ||| |||||||| ||| | |||| || |||||| | |
Sbjct 621 ACCAAGCTACGAAATCTGC--GAG-GGAAGAAGAAGAAGCTGGGAAAAAGAAAGT-GA-A 675
Query 524 AGAATGATGAGC-TCAAAGATGTGTCAATGAAGGTGAATCCGAAAGTTC-AGGGCTTAGG 581
||| ||||| | | ||||||||| ||| ||| |||||| |||||| | || || ||
Sbjct 676 AGAC-GATGAACCT-AAAGATGTGACAAAGAAAGTGAATGGGAAAGTGCCAG---TT-GG 729
Query 582 GTTTGTTAAGGTGAATATGGATGGAGTTGGTATAGGCAGAAAAGTGGATATGAGA-GCTC 640
|||| |||||||||| ||||||||||||| |||||| || ||||||||| ||| | ||||
Sbjct 730 GTTTATTAAGGTGAACATGGATGGAGTTGCTATAGGAAGGAAAGTGGATTTGA-ATGCTC 788
Query 641 ATTCGTCTTACGAAAACTTGGCTCAGACGCTTG-AGGAAATGTTCTTTGGAA-TGA-CAG 697
|||| |||||||| || ||| | || || ||| | || ||||||||| | | | | | |
Sbjct 789 ATTCTTCTTACGAGAATTTGTCGCAAACA-TTGGAAGATATGTTCTTTCGCACTAATCCG 847
Query 698 G-TACTA-CTTGT---CGAGAAAAGGT---TAAACCTTTAAGGCTTTTAGATGGATCATC 749
| ||||| | || | || | | | |||||| || ||||| ||||||||||| ||
Sbjct 848 GGTACTATCGGGTTAACCAGTCA-GTTCACTAAACCATTGAGGCTGTTAGATGGATCGTC 906
Query 750 AGACTTTGTACTCACTTATGAAGATAAGGAAGGGGATTGGATGCTTGTTGGAGATGTTCC 809
|| |||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 907 TGAGTTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCC 966
Query 810 ATGGAGAATGTTTATCAACTCGGTGAAAAGGCTTCGGATCATGGGAACCTCAGAAGCTAG 869
|||||||||||| |||| ||| ||||||||||||||| | ||| |||||| |||||||
Sbjct 967 ATGGAGAATGTTCATCACCTCAGTGAAAAGGCTTCGGGTTATGAAAACCTCTGAAGCTAA 1026
Query 870 TGGACTAGCTCCAAGACGTCAAGAGC-AGAAGGATAGACAAAGAAA-CAACCCTGTTTAG 927
|||||| ||| || || |||||| | | || || |||||| |||| || || ||||||
Sbjct 1027 TGGACTCGCTGCACGAAATCAAGAACCA-AACGAGAGACAACGAAAGCAGCCG-GTTTAG 1084
Query 928 CTTCCCTT 935
||| |||
Sbjct 1085 -TTCTCTT 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5