BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04560.1 Length=855 Score E Sequences producing significant alignments: (Bits) Value Ahg470438 jgi|Araly1|470438|fgenesh2_kg.1__392__AT1G04560.1 1013 0.0 > Ahg470438 jgi|Araly1|470438|fgenesh2_kg.1__392__AT1G04560.1 Length=714 Score = 1013 bits (548), Expect = 0.0 Identities = 666/720 (93%), Gaps = 20/720 (3%) Strand=Plus/Plus Query 104 GAAGGTAAAAGAAGCAATTGATGGCGACGACAGTGGGAAGAAACATAGCAGCACCATTGC 163 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAGGTAAAAGAGGAAATTGATGGCGACGACAGTGGGAAGAAACATAGCAGCACCATTGC 60 Query 164 TGTTCTTGAATCTTGTTATGTACCTGATTGTGCTTGGTTTTGCAAGTTGGTGTCTCAATA 223 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 61 TGTTCTTGAATCTTGTTATGTACCTGATTGTGCTAGGTTTCGCAAGTTGGTGTCTCAATA 120 Query 224 AATACATCAACGGCCAAACTAACCACCCAAGTTTTGGAGGCAATGGAGCAACACCGTTCT 283 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 121 AATACATCAACGGTCAAACTAATCACCCAAGTTTTGGAGGCAATGGAGCAACACCGTTCT 180 Query 284 TCTTGACGTTTTCGATATTGGCGGCTGTGGTAGGAGTAGCGTCGAAG-TTGGCCGGAGCA 342 ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| Sbjct 181 TCTTGACGTTTTCGATATTGGCGGCGGTGGTAGGAGTAGCGTCGAAGATTG-CCGGAGCT 239 Query 343 AATCATATTAGGTTTTGGAGGAATGATAGTTTAGCCGCTGCTGGAGCTTCTTCCATCGTT 402 |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| Sbjct 240 AATCATATTAGGTTTTGGAGGAATGATAGTCTGGCCGCTGCCGGAGCTTCTTCCATCGTT 299 Query 403 GCATGGGCTATCACAGCTCTTGCCATGGGGTTGGCATGCAAACAAATAAACATAGGAGGA 462 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 300 GCATGGGCCATCACAGCTCTTGCCATGGGGTTGGCATGCAAGCAAATAAACATAGGAGGA 359 Query 463 TGGAGAGGATGGAGACTGAAGATGATTGAAGCCTTCATTATCATTTTGACGTTCACGCAG 522 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 360 TGGAGAGGATGGAGATTGAAGATGATTGAAGCCTTCATTATCATTTTGACGTTCACTCAA 419 Query 523 CTT-CTCTACCTCATGTTGATCCATGCCGGT-TCACTCAGCAGCAAATATGGTCCTGGAT 580 || |||||| ||||||||||||| ||||| | | | |||||||||||||||||||| | Sbjct 420 -TTGCTCTACGTCATGTTGATCCACGCCGGCGT-ATTGAGCAGCAAATATGGTCCTGGCT 477 Query 581 ACAGAGACCAAGACTATGCTACAGGCCAAG--C-T--C-ATGGTCATGGTCATGTACCAC 634 |||||||||| ||||| ||||||||||||| | | | ||||||||||||||||||||| Sbjct 478 ACAGAGACCAGGACTACGCTACAGGCCAAGGTCATGGCCATGGTCATGGTCATGTACCAC 537 Query 635 ACACTGTGGGAGAGCACAAGGCTGGTGTTGGATCTACCATGGCAGTCTGATGAAAA-TCT 693 |||||||||| ||||||||||||||||||||| |||||||||||| |||| ||| || Sbjct 538 ACACTGTGGGCGAGCACAAGGCTGGTGTTGGAAGTACCATGGCAGTTTGAT-AAACGTC- 595 Query 694 GTGTCTTTTAATTGTGTTTTGACGTTTGGTTAAGAAGTACTTATTAT----AGTTTATGT 749 |||| ||||||||||||||||||| |||| |||||||||||||| || ||||||||| Sbjct 596 GTGTGTTTTAATTGTGTTTTGACGCTTGGATAAGAAGTACTTATGATGTGTAGTTTATGT 655 Query 750 TTTTTCAAGTTATGTAATAATGTAATTCCTATCCATCTGACAAACGAACGAATCTTGTGT 809 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 656 TTTTCCAAGTTATGTAATAATGTAATTC-TATCCATCTGACAAACGAACGAATCTTGTGT 714 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31642021110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5