BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04570.1 Length=1935 Score E Sequences producing significant alignments: (Bits) Value Ahg919141 jgi|Araly1|919141|scaffold_100422.1 2678 0.0 > Ahg919141 jgi|Araly1|919141|scaffold_100422.1 Length=1669 Score = 2678 bits (1450), Expect = 0.0 Identities = 1602/1675 (96%), Gaps = 11/1675 (1%) Strand=Plus/Plus Query 156 GTTTTCATCTCTCTGAAACAATGGAAAGAATTATGATAAATCCATTGTTATCAATTCAAA 215 ||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 1 GTTTTCATCTCCCTGAAACAATGGAAAGAATCATGATAAATCCATTGTTCTCAATCCAAA 60 Query 216 ACTCCCCAACCAAGTTCTTGAAACCACCACTTTCGTCCATTCACAGGC-AACAACAACAA 274 |||||||||||||||||||||||||||||||||||||||||||||||| || | |||| | Sbjct 61 ACTCCCCAACCAAGTTCTTGAAACCACCACTTTCGTCCATTCACAGGCGAA-AGCAACTA 119 Query 275 CAAGAGAGGCAGAGCAATAACAATACCCTTTTCATGGGGGA-AGCCAGACCAAGAAGAGC 333 |||||||||| |||||||||||||||||| ||||||| ||| | ||| ||||||||| || Sbjct 120 CAAGAGAGGCGGAGCAATAACAATACCCTATTCATGGTGGATA-CCAAACCAAGAAGGGC 178 Query 334 GACCACATTCGCATGTCTCTCGATAAGGAGAAGGAGAAACAACAATGGTGTGTCTGAATT 393 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GACGACACTCGCATGTCTCTCGATAAGGAGAAGGAGAAACAACAATGGTGTGTCTGAATT 238 Query 394 TGAAGAAACGGCGAGGTTTGAACAAGTGGGTGGTAAAGGAATCTCGGTTTTGTGCGGGTT 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 239 TGAAGAAACGGCGAGGTTTGAACAAGTGGGTGGTAAAGGAATCTCGGTTTTGTGTGGGTT 298 Query 454 AGGTTATTGGGTACAAGGATCAAGATGTTTCCCATGGCTTGCACTTAACTTCCATATGGT 513 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 299 AGGTTATTGGGTACAAGGATCAAGATGTTTCCCATGGCTTGCTCTTAACTTCCATATGGT 358 Query 514 TCATAGCCTCGCACTCCAACCATCGACGCTTCAGCTTGTGCAATACTCTTGCAGTCTTCC 573 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 359 TCATAGCCTCGCACTCCAACCATCCACTCTTCAGCTTGTGCAATACTCTTGCAGTCTTCC 418 Query 574 CATGGTGGCTAAACCTCTCTACGGTGTGCTCTCAGATGTTCTTTACATTGGAAGTGGTCG 633 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 419 CATGGTGGCTAAACCTCTCTACGGTGTTCTCTCAGATGTTCTTTACATTGGAAGTGGTCG 478 Query 634 TAGAGTTCCTTACATCGCCATTGGAGTGTTTCTGCAGGTTTTAGCATGGGGTTCAATGGG 693 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TAGAATTCCTTACATCGCCATTGGAGTGTTTCTGCAGGTTTTAGCATGGGGTTCAATGGG 538 Query 694 GATATTTCAAGGAGCTAGAGAAGTTCTTCCTTCTCTTGTGGCATGTGTCCTGCTTAGTAA 753 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 539 GATATTTCAAGGAGCTAGAGAAGTTCTTCCTTCTCTTGTGGCATTTGTCCTGCTTAGCAA 598 Query 754 CCTTGGAGCATCCATCACTGAGGTTGCAAAAGACGCTCTTGTTGCGGAATACGGTCTGAG 813 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 599 CCTTGGAGCATCCATCACTGAGGTTGCAAAAGACGCTCTTGTTGCGGAATATGGTCTGAG 658 Query 814 ATACCGAATAAACGGTCTCCAGTCTTAT-GCGCTCATGGCTTCAGCAGCTGGTGGAGTCC 872 ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 659 ATACCAAATAAACGGTCTCCAGTCTT-TCGCGCTCATGGCTTCAGCAGCTGGTGGAGTCC 717 Query 873 TTGGAAACTTACTTGGAGGATATCTCTTACTCACAACACCTCCTAAGATCTCCTTTCTTG 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TTGGAAACTTACTTGGAGGATATCTCTTACTCACAACACCTCCTAAGATCTCCTTTCTTG 777 Query 933 TATTCTCTGCTTTGTTGTCTCTGCAGCTCGTTGTTTCTTTATCTTCCAAAGAAGAATCTT 992 ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 778 TATTCGCTGGTTTGTTGTCTCTGCAGCTTGTTGTTTCTTTATCTTCCAAAGAAGAATCTT 837 Query 993 TCGGCTTACCACGGATAGCAGAGACAAGCTCGGTTTTGGAGAGCGTCAAGAAACAGATAT 1052 ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 838 TCGGCCTACCACGGTTAGCAGAGACAAGCTCGGTTTTGGAGAGCGTCAAAAAACAGATAT 897 Query 1053 CGAATCTTAAGGAAGCAATTCAGGCAGATGAAATCTCCCAGCCTCTGATTTGGGCAGTAG 1112 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 898 CAAATCTTAAGGAAGCAATTCAGGCAGATGAAATCTCCCAGCCTCTTATTTGGGCAGTAG 957 Query 1113 TATCCATTGCAATGGTCCCTCTTCTCTCAGGATCAGTCTTCTGTTACCAAACTCAAGTTC 1172 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 958 TATCCATTGCAATGGTCCCTCTTCTCTCGGGATCAGTCTTCTGTTACCAAACTCAAGTTC 1017 Query 1173 TGAATCTTGATCCTTCGGTTATTGGAATGTCGAAAGTGATTGGACAGTTGATGCTTCTTT 1232 | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1018 TAAATCTTGATCCTTCGGTTATTGGAATGTCGAAAGTGATAGGACAATTGATGCTTCTTT 1077 Query 1233 GTCTAACCGTGGTCTATGATCGATACTTGAAGACACTTCCCATGAGACCACTGATCCATA 1292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 GTCTAACCGTGGTCTATGATCGATACTTGAAGACACTTCCCATGAGACCACTGATCCATA 1137 Query 1293 TCATCCAACTCTTGTACGGTTTATCGATTCTCCTCGA-TTACATCTTGGTGAAGCAAATA 1351 |||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| Sbjct 1138 TCATCCAACTCTTGTACGGTCTATCGATTCTCCTCGACTTT-ATCTTGGTGAAGCAAATA 1196 Query 1352 AATCTCGGATTTGGAATCTCCAACGAGGTTTATGTGCTGTGTTTTTCCAGCCTAGCAGAA 1411 ||||||||||||||||||||||| ||| |||||||| ||||||| |||||| |||||||| Sbjct 1197 AATCTCGGATTTGGAATCTCCAATGAGATTTATGTGTTGTGTTTCTCCAGCTTAGCAGAA 1256 Query 1412 ATCCTAGCACAGTTTAAGATCCTTCCATTTGCAGTCAGATTAGCAAGTATGTGTCCACAG 1471 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1257 ATCCTTGCACAGTTTAAGATCCTTCCGTTTGCAGTCAGATTAGCCAGTATGTGTCCACAG 1316 Query 1472 GGGTGTGAAGGATCAGTCACATCTTTTCTTGCTTCAACTCTGTGTCTATCACAAATAGTT 1531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 GGGTGTGAAGGATCAGTCACATCTTTTCTTGCTTCAACTCTGTGTCTATCACAAATAGTT 1376 Query 1532 AGTGCATTCTTAGGCGTCGGATTGGCTAATCTGATCGGTATAACATCAAGTAACTATTCA 1591 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 AGCGCATTCTTAGGGGTCGGATTGGCTAATCTGATCGGTATAACATCAAGTAACTATTCA 1436 Query 1592 AACTTGTCTTCAGGGATTCTCATACAGTCTCTAGCAGCTCTGGCACCTTTGTGCTTCATG 1651 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 1437 AACTTGTCTTCAGGGATTCTCATACAGTCTCTAGCAGCTTTGATGCCTTTGTGCTTCATG 1496 Query 1652 CACCTTGTGCCAATGTCAGAACCTGTGATTGAGAAAGAAGGCAAGAGAGGTATTAGTAAG 1711 ||| ||||||||||||||||||||||||||||||||||| | || |||||||| |||||| Sbjct 1497 CACTTTGTGCCAATGTCAGAACCTGTGATTGAGAAAGAAAGAAAAAGAGGTATAAGTAAG 1556 Query 1712 AGAAGCAGGAGAAACAGACGAGTCGGGAGAGTAGTCGATAAAGAAAGTGTT-ACTTACCG 1770 |||||||||||||||||||||||||||||||||||||||||||||| |||| | | | || Sbjct 1557 AGAAGCAGGAGAAACAGACGAGTCGGGAGAGTAGTCGATAAAGAAAATGTTGAAT-ATCG 1615 Query 1771 ACGGGAAAGAGAGTCAGAAGAAGCACAAAGGTAGTGTAAAGTATAGTTACATCAC 1825 |||||||||||||||||||||||||||||| ||||| || ||||||||| ||||| Sbjct 1616 ACGGGAAAGAGAGTCAGAAGAAGCACAAAGATAGTGCAA-GTATAGTTAAATCAC 1669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72714277705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5