BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04620.1 Length=1609 Score E Sequences producing significant alignments: (Bits) Value Ahg470445 jgi|Araly1|470445|fgenesh2_kg.1__399__AT1G04620.1 2562 0.0 > Ahg470445 jgi|Araly1|470445|fgenesh2_kg.1__399__AT1G04620.1 Length=1551 Score = 2562 bits (1387), Expect = 0.0 Identities = 1503/1558 (96%), Gaps = 12/1558 (1%) Strand=Plus/Plus Query 57 tct-tctct-tcttctcttcttctctGGCTGGGCAACCATGATTACTGTCGTCACCTCCA 114 ||| ||||| || |||| || ||||| |||| |||||||||||||| | |||||||||| Sbjct 1 TCTCTCTCTCTCCTCTCGTC-TCTCTCGCTGAGCAACCATGATTAC--T-GTCACCTCCA 56 Query 115 GGCTCTCTCTCCTTCCTCCAGT-CTTCTCCGTCGTTAACTCTTCTTCTTCGCGTTCCAAA 173 ||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||| Sbjct 57 AGCTCTCTCTCCTTCCTCCA-TGCTTCTCTGTCGTTAACTCTTCATCTTCGCGTTCCAAA 115 Query 174 GATATGAAT-CTAGAGCCAAAAAAGAAGGTTAAATTAAGAGAAGACTGGAGAGAAAAGTC 232 ||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 116 GATATGAATAC-AGAGCCAAAAAAGAAAGTTAAACTAAGAGAAGACTGGAGAGAAAAGTC 174 Query 233 CAGACCTATCCCACCCGGAGGAACCTATCCAGCTAAAGACCATTGCAGTCAG-TGCGGGC 291 || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 175 CAAACCTATCCCACCCGGAGGAACCTATCCAGCTAAAGACCATTGCAGTC-GATGCGGGT 233 Query 292 TATGCGACACCTACTACATTGCCCATGTGAAGGAGGCATGTGCATTTCTTGGAGATGGAA 351 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 234 TATGCGACACCTATTACATCGCCCATGTGAAGGAGGCATGTGCATTTCTTGGAGATGGAA 293 Query 352 TGTCAAGGATTGAGAGCTTGGAACCTGTTGTGCATGGTAGAGGAAGGAAAGCAGATTCCT 411 |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| Sbjct 294 TGTCAAGGATTGAGAGCTTGGAGCCTGTTGTGCATGGTCGAGGAAGGAAACCAGATTCCT 353 Query 412 TACAAGATACATATTTTGGGGTGCATCAAGAGCAGCTCTATGCTCGTAAGTTGAAGCCTG 471 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 TAGAAGATACATATTTTGGGGTGCATCAAGAGCAGCTCTATGCTCGTAAGTTGAAGCCTG 413 Query 472 TCGAAGGAGCTCAGTGGACTGGAATTGTCACAACCATAGCCATTGAGATGCTGAAATCTA 531 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 TTGAAGGAGCTCAGTGGACTGGAATTGTCACAACCATAGCCATTGAGATGCTGAAATCTA 473 Query 532 ATATGGTTGAAGCTGTCGTTTGTGTGCAGAGTGATCCTGAAGACAGATTATCTCCAAGAC 591 | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 ACATGGTTGAGGCTGTTGTTTGTGTGCAGAGTGATCCTGAAGACAGATTATCTCCAAGAC 533 Query 592 CAGTATTAGCCAGGACACCTGAAGAAGTTTTGGCTGCAAGAGGTGTCAAGCCAACTCTGT 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 CAGTATTAGCCAGGACACCTGAAGAAGTTTTGGCTGCAAGAGGTGTCAAGCCAACTCTGT 593 Query 652 CTCCTAATCTGAATACTCTTGAATTAATCGAGGCTTCCGGAGTGAAGCGTCTTCTGTTTT 711 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 594 CTCCTAATCTGAATACTCTTGAATTAATCGAGGCTTCCGGAGTGAAACGTCTTCTGTTTT 653 Query 712 GCGGTGTGGGTTGCCAAGTGCAAGCATTGAGATCAGTGGAGCAGCATCTGAATCTGGAAA 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 654 GCGGTGTGGGTTGCCAAGTGCAAGCATTGAGATCAGTGGAGCAGCATCTGAATCTGGAGA 713 Query 772 AGTTGTATGTACTAGGCACCAATTGTGTGGACAACGGAACACGAGATGGACTAGACAAGT 831 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 714 AGTTGTATGTACTAGGCACCAATTGTGTGGACAATGGAACACGAGATGGACTAGACAAGT 773 Query 832 TTCTGAAAGCAGCTAGTAAAGAGCCAGAGACTGTTCTCCATTATGAATTTATGCAAGATT 891 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 774 TTCTGAAAGCGGCTAGTAAGGAGCCAGAGACTGTTCTCCATTATGAATTTATGCAAGATT 833 Query 892 ACAAGGTCCAACTCAAACACTTGGATGGACACATTGAAGAGGTTCCCTATTTCTCTCTAC 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 ACAAGGTCCAACTCAAACACTTGGATGGACACATTGAAGAGGTTCCCTATTTCTCTCTAC 893 Query 952 CTGCAAACGATTTAGTAGATGTCATAGCTCCATCGTGTTACAGCTGCTTTGATTACACAA 1011 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 894 CAGCAAACGATTTAGTAGACGTCATAGCTCCATCGTGTTACAGCTGCTTTGATTACACAA 953 Query 1012 ATGCATTAGCGGATTTGGTTATCGGTTACATGGGTGTTCCGAAGTATTCAGGTCTGAACA 1071 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 954 ATGCATTAGCGGATTTGGTTATCGGTTACATGGGTGTTCCGAGGTATTCAGGTCTGAACA 1013 Query 1072 TGACTGACCATCCACAGTATATTACAGTGAGAAATGAACGTGGGAAAGAAATGCTCAGCT 1131 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1014 TGACTGACCATCCACAGTATATTACAGTGAGAAATGAACGCGGGAAAGAAATGCTCAGCT 1073 Query 1132 TGGTAGAAAACCTTTTGGAGATCACTCCAACAATCAGCAGCGGTGATCGGCGACCTTTTG 1191 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 TGGTTGAAAACCTTTTGGAGATCACTCCAACAATCAGCAGCGGTGATCGGCGACCTTTTG 1133 Query 1192 TGACAGAAACTGTTAAGGCAGACGATGCTGCTAAGTTTGGTCAAGGTCCTGCTCAGCCAG 1251 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1134 TGACAGAAACTGTTAAGGCAGACGATGATGCTAAGTTTGGTCGAGGTCCTGCTCAGCCAG 1193 Query 1252 CGCCACTATTTGTTGGAAACATTATTGCGTTCATCCTAAATTTGGTTGGTCCTAAGGGTC 1311 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1194 CGCCAATATTTGTTGGAAACATTATTGCGTTCATCCTAAGTTTGGTTGGTCCTAAGGGTC 1253 Query 1312 TAGAATTTGCTCGGTACTCGTTGGACTACCATACCATCAGAAACTATTTGTACGTAAACC 1371 ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1254 TAGAATTCGCTCGGTACTCATTGGACTACCATACCATCAGAAACTATTTGCACGTAAACC 1313 Query 1372 GCAAATGGGGAAAGCAAAGAGCAAACACCCACATGCCATCATATGCCAAAAAGATAGTGG 1431 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1314 GCAAATGGGGAAAGCAAAGAGCCAACAGCCACATGCCATCATATGCCAAAAAGATAGTGG 1373 Query 1432 AAATGTACAACAAAAACGGCCAAATAGATAAAATGCTCTCCAAGAAATGAACATTTTAGG 1491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 AAATGTACAACAAAAACGGCCAAATAGATAAAATGCTCTCCAAGAAATGAACATTTTAGG 1433 Query 1492 CCTTTCTCATGTAAGTTTCCAAATGTATATTTCATCCTACAAGTGAGTAAATGTACATTG 1551 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 CCTTTCTCATGTAAGTTTGCAAATGTATATTTCATCCTACAAGTGAGTAAATGTACATTG 1493 Query 1552 GTCCTACTGTTTCTCAACTTGTAGTATGTTAGTAATATCCAAAACTATTTCCCTCGTG 1609 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1494 GTCCTACTCTTTCTCAACTTGTAGTATGATAGTAATATCCAAAACTATTTCCCTCGTG 1551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60296857835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5