BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04750.1 Length=1192 Score E Sequences producing significant alignments: (Bits) Value Ahg919162 jgi|Araly1|919162|scaffold_100443.1 1225 0.0 Ahg482248 jgi|Araly1|482248|fgenesh2_kg.4__1308__AT2G33120.2 590 1e-167 > Ahg919162 jgi|Araly1|919162|scaffold_100443.1 Length=700 Score = 1225 bits (663), Expect = 0.0 Identities = 688/700 (98%), Gaps = 1/700 (0%) Strand=Plus/Plus Query 121 GAGATTTAAGGTAAAGAAAAAATGGCGCAACAATCGTTGATCTACAGTTTCGTAGCTCGC 180 ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 GAGATTT-AGGTAAAGAGAAAATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGC 59 Query 181 GGCACGGTGATCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GGCACGGTGATCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCT 119 Query 241 CAGTGCCTCCAGAAGCTTCCGTCTTCGAACAACAAGTTCACCTACAACTGCGACGGTCAT 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 120 CAGTGCCTCCAGAAGCTTCCGTCTTCCAACAACAAGTTCACCTACAACTGCGACGGTCAT 179 Query 301 ACCTTCAATTACCTTGTCGAAGATGGATTCACCTATTGTGTTGTTGCGGTTGATTCTGCT 360 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 ACCTTCAACTACCTTGTCGAAGATGGATTCACCTATTGTGTTGTTGCGGTTGATTCTGCT 239 Query 361 GGGAGGCAAATTCCCATGTCCTTTTTGGAAAGAGTAAAAGAAGATTTTAACAAGCGATAT 420 |||||||||||||| ||| |||||||||||||||||||||| |||||||||||| ||||| Sbjct 240 GGGAGGCAAATTCCGATGGCCTTTTTGGAAAGAGTAAAAGAGGATTTTAACAAGAGATAT 299 Query 421 GGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAGGAGTTTGGCTCTAAA 480 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GGTGGTGGAAAAGCTGCAACTGCTCAAGCAAACAGCTTGAATAAGGAGTTTGGCTCTAAA 359 Query 481 CTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAGCTTGCTAAG 540 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 360 CTGAAAGAGCATATGCAGTATTGCATGGATCATCCAGATGAGATTAGCAAGCTTGCTAAG 419 Query 541 GTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAACATTGAGAAGGTTCTT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAACATTGAGAAGGTTCTT 479 Query 601 GACCGTGGTGAGAAAATTGAGCTTTTGGTGGACAAAACCGAAAATCTTCGCTCACAGGCA 660 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GACCGTGGTGAAAAAATTGAGCTTTTGGTGGACAAAACCGAAAATCTTCGCTCACAGGCA 539 Query 661 CAAGATTTCAGAACAACAGGAACGCAGATGAGAAGAAAGATGTGGCTTCAGAACATGAAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CAAGATTTCAGAACAACAGGAACGCAGATGAGAAGAAAGATGTGGCTTCAGAACATGAAG 599 Query 721 ATAAAACTCATAGTGCTCGCCATCATTATCGCACTGATTCTCATCATCGTGCTCTCAGTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATAAAACTCATAGTGCTCGCCATCATTATCGCACTGATTCTCATCATCGTGCTCTCAGTT 659 Query 781 TGCCATGGGTTTAAGTGTTAAGCCCAGAAAATTCAAAACT 820 |||||||||||||||||||||||||||||||||||||||| Sbjct 660 TGCCATGGGTTTAAGTGTTAAGCCCAGAAAATTCAAAACT 699 > Ahg482248 jgi|Araly1|482248|fgenesh2_kg.4__1308__AT2G33120.2 Length=1513 Score = 590 bits (319), Expect = 1e-167 Identities = 410/454 (90%), Gaps = 6/454 (1%) Strand=Plus/Plus Query 332 CCTATTGTGTTGTTGCGGTTGATTCTGCTGGGAGGCAAATTCCCATGTCCTTT-TTGGAA 390 |||||||||||||||| ||||||||||||||||| || ||||| ||| |||| |||||| Sbjct 833 CCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGACAGATTCCTATG-GCTTTCTTGGAA 891 Query 391 AGAGTAAAAGAAGATTTTAACAAGCGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCA 450 |||| || || |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 892 CGAGTGAAGGAGGATTTTAACAAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCC 951 Query 451 AACAGCTTGAATAAGGAGTTTGGCTCTAAACTGAAAGAGCATATGCAGTATTGCATGGAT 510 |||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||| Sbjct 952 AACAGCTTGAATAAAGAATTTGGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGAT 1011 Query 511 CATCCTGATGAGATTAGCAAGCTTGCTAAGGTGAAGGCGCAAGTGTCAGAAGTTAAGGGT 570 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| Sbjct 1012 CATCCTGATGAGATTAGCAAGCTTGCTAAGGTGAAGGCTCAAGTGTCTGAAGTTAAAGGT 1071 Query 571 GTAATGATGGAAAACATTGAGAAGGTTCTTGACCGTGGTGAGAAAATTGAGCTTTTGGTG 630 || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1072 GTTATGATGGAAAACATTGAGAAGGTTCTTGATCGTGGTGAGAAAATTGAGCTTCTGGTG 1131 Query 631 GACAAAACCGAAAATCTTCGCTCACAGGCACAAGATTTCAGAACAACA-GGAACGCAGAT 689 |||||||||||||| ||||| |||||||| ||||||||||||||| || ||||| || || Sbjct 1132 GACAAAACCGAAAACCTTCGTTCACAGGCGCAAGATTTCAGAACA-CAAGGAACTCAAAT 1190 Query 690 GAGAAGAAAGATGTGGCTTCAGAACATGAAGATAAAACTCATAGTGCTCGCCATCATTAT 749 |||||| ||||||||| |||||||||||||||||||||| || || || || ||||| || Sbjct 1191 GAGAAGGAAGATGTGGTTTCAGAACATGAAGATAAAACTGATTGTTCTTGCAATCATCAT 1250 Query 750 CGCACT-GATTCTCATCATCGTGCTCTCAGTTTG 782 || || ||||||||||||| | ||||| ||||| Sbjct 1251 TGC-CTTGATTCTCATCATCATCCTCTCGGTTTG 1283 Score = 257 bits (139), Expect = 1e-67 Identities = 173/190 (91%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 142 ATGGCGCAACAATCGTTGATCTACAGTTTCGTAGCTCGCGGCACGGTGATCCTCGTTGAG 201 |||||||||||||||||||||||||||||||| ||||| || || || ||||| || ||| Sbjct 613 ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTAATCCTTGTCGAG 672 Query 202 TTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCTCAGTGCCTCCAGAAGCTTCCG 261 ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| Sbjct 673 TTCACTGATTTCAAAGGCAATTTCACATCTATCGCTGCTCAGTGCCTCCAGAAGCTTCCT 732 Query 262 TCTTCGAACAACAAGTTCACCTACAACTGCGACGGTCATACCTTCAATTACCTTGTCGAA 321 ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct 733 TCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAATTACCTCGTCGAA 792 Query 322 GATGGATTCA 331 ||||||||| Sbjct 793 AATGGATTCA 802 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44489444139 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5