BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04950.1 Length=2192 Score E Sequences producing significant alignments: (Bits) Value Ahg333812 jgi|Araly1|333812|fgenesh1_pg.C_scaffold_1000377 2606 0.0 > Ahg333812 jgi|Araly1|333812|fgenesh1_pg.C_scaffold_1000377 Length=1665 Score = 2606 bits (1411), Expect = 0.0 Identities = 1591/1673 (95%), Gaps = 31/1673 (2%) Strand=Plus/Plus Query 177 ATGAGCATTGTACCTAAGGAAACGGTTGAGGTAATAGCTCAAAGTATTGGGATTACCAAC 236 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGCATTGTACCTAAGGAAACGGTGGAGGTAATAGCTCAAAGTATTGGGATTACCAAC 60 Query 237 TTGTTACCTGAAGCTGCTCTTATGCTTGCTCCTGATGTTGAGTATCGTGTCCGAGAGATC 296 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 TTGTTACCTGAAGCTGCTCTTATGCTTGCTCCTGATGTCGAGTATCGTGTCCGAGAGATC 120 Query 297 ATGCAGGAAGCTATCAAATGCATGCGTCACTCAAAGAGAACGACTTTAACAGCTTCGGAT 356 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 ATGCAGGAAGCTATCAAATGCATGCGTCATTCAAAGAGAACGACTTTAACAGCTTCGGAT 180 Query 357 GTAGATGGTGCTCTCAACTTAAGGAACGTTGAGCCGATATATGGATTTGCCTCAGGAGGG 416 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 181 GTAGATGGTGCTCTCAACTTGAGGAACGTTGAGCCGATATATGGCTTTGCCTCAGGAGGA 240 Query 417 CCATTTCGTTTTAGAAAAGCTATTGGACATCGCGATTTGTTCTACACTGATGACAGAGAA 476 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 CCATTTCGTTTTAGAAAAGCTATTGGGCATCGCGATTTGTTCTACACTGATGACAGAGAA 300 Query 477 GTGGATTTCAAAGATGTGATCGAAGCCCCGCTGCCAAAAGCTCCCCTTGATACTGAAATT 536 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 GTGGATTTCAAAGATGTGATCGAAGCCCCGCTACCAAAAGCTCCCCTTGATACTGAAATT 360 Query 537 GTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTA 420 Query 597 GAAGTCATTAGAGCACCTGCAGAAACCAAAATCCATGAACAAAAAGACGGACCTCTTATT 656 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 421 GAAGTCATTAGAGCACCTGCAGAAAACAAAATCCATGAACAAAAAGACGGACCTCCTATT 480 Query 657 GACGTTAGGCTACCAGTGAAGCATGTACTATCTAGGGAACTTCAGTTATACTTCCAAAAG 716 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GACGTTAGGCTACCAGTAAAGCATGTACTATCTAGGGAACTTCAGTTATACTTCCAAAAG 540 Query 717 ATTGCTGAACTTGCAATGAGCAAGTCAAATCCTCCTCTGTATAAAGAAGCATTAGTGAGC 776 ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 541 ATTGCTGAACTTGCAATGAGCAAGTCAAATCCTGCTCTGTTTAAAGAAGCATTAGTGAGC 600 Query 777 TTGGCCTCAGACTCAGGACTTCATCCTCTAGTTCCATATTTTACAAATTTCATTGC---T 833 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 601 TTGGCCTCAGACTCCGGACTTCATCCTCTAGTTCCATATTTTACAAATTTCATTGCTGAT 660 Query 834 ---G-------ATG--------AGGTTTCAAATGGCTTAAATGACTTCCGACTCCTGTTT 875 | ||| ||||||||||||| ||||| ||||| |||||||||||| Sbjct 661 GAGGTAACATTATGCACCACCAAGGTTTCAAATGGTTTAAAAGACTTTCGACTCCTGTTT 720 Query 876 AATCTAATGCACATTGTTAGAAGTCTTCTACAGAATCCTCACATACACATAGAACCTTAT 935 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 721 AATCTAATGCACATTGTTAGAAGTCTTCTACAGAATCCTCACATAAACATAGAACCTTAT 780 Query 936 CTGCACCAGTTGATGCCATCTGTTGTAACATGCCTTGTATCAAGAAAGCTTGGAAATAGA 995 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 781 CTGTACCAGTTGATGCCATCTGTTGTAACGTGCCTTGTATCAAGAAAGCTTGGAAATAGA 840 Query 996 TTTGCTGACAACCACTGGGAACTCAGAGATTTTGCGGCAAATCTGGTTTCACTGATATGT 1055 |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 841 TTTGCTGACAACCATTGGGAACTCAGAGATTTTGCGTCAAATCTGGTTGCACTGATATGT 900 Query 1056 AAAAGGTATGGAACCGTTTATATAACTCTTCAGTCTCGTCTTACCAGAACTTTAGTCAAT 1115 |||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 901 AAAAGGTACGGACCCGTTTATATTACTCTTCAGTCTCGTCTTACAAGAACTTTAGTCAAT 960 Query 1116 GCACTGCTGGACCCAAAGAAGGCTTTGACTCAGCACTATGGTGCGATTCA-AGGATTAGC 1174 |||||| ||||||||||||| ||||||||||||||||||||||| ||| | ||||||||| Sbjct 961 GCACTGTTGGACCCAAAGAAAGCTTTGACTCAGCACTATGGTGCAATT-AGAGGATTAGC 1019 Query 1175 AGCTTTGGGGCACACTGTTGTACGCCTTCTT-ATTCTATCAAATCTCGAACCATATCTAA 1233 |||||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 1020 AGCTTTGGGGCACAATATTGTACGCCTT-TTAATTCTATCAAATCTCGAACCGTATCTAA 1078 Query 1234 GTCTTCTCGAACCTGAATTGAATGCTGAGAAGCaaaaaaaTCAGATGAAGATCTACGAAG 1293 |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 1079 GTCTTCTCCAACCTGAATTGGATGCTGAGAAGCAAAAAAATCAGATGAAGAACTACGAAG 1138 Query 1294 CTTGGCGTGTATATGGAGCCTTGCTGCGTGCTGCAGGCTTGTGTATACATGGCCGGCTTA 1353 ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 1139 CTTGGTGTGTATATGGAGCCTTGCTGCGAGCTGCAGGCTTGTGTATACATGACCGGCTTA 1198 Query 1354 AAATCTTCCCACCTTTACCATCTCCGTCACCAAGTTTTCTCCATAAGGGAAAGGGAAAGG 1413 ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| Sbjct 1199 AAATCTTCCCACCTTTACCATCTCCATCACCAAGTTTCCTCCAT------AAGGGAAAGG 1252 Query 1414 GAAAGATAATCAGTACTGATCCCCACAAGCGGAAGCTGAGTGTAGATTCTTCAGAAAACC 1473 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1253 GAAAGATAATCAATACTGATCCCCACAAGCGGAAGCTGAGCATAGATTCTTCAGAAAACC 1312 Query 1474 AATCACCGCAGAAAAGATTGATAACCATGGATGGGCCAGATGGTGTACATTCACAAGATC 1533 |||| || |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1313 AATCGCCACAGAAAAGATTGATAACCATGGATGGGCCAGATGGTGTGCAATCACAAGATC 1372 Query 1534 AATCTGGCTCAGCTCCAATGCAAGTAGATAATCCAGTGGAAAATGACAATCCGCCACAAA 1593 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 AATCCGGCTCAGCTCCAATGCAAGTAGATAATCCAGTGGAAAATGACAATCCGCCACAAA 1432 Query 1594 ACTCTGTTCAGCCATCCTCATCAGAACAAGCCTCTGATGCTAACGAATCTGAAAGCAGAA 1653 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1433 ACTCTGTTCAGCCATCCTCATCAGAACAAGCTTCTGATGCTAACGAATCTGAAAGCAGAA 1492 Query 1654 ATGGAAAGGTGAAAGAAAGCGGCAGGAGTCGGGCTATTACCATGAAAGCAATCCTTGATC 1713 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1493 ATGGAAAGGTGAAAGAAAGCGGTAGGAGTCGGGCTATTACCATGAAAGCAATCCTTGATC 1552 Query 1714 AGATATGGAAAGATGATCTTGATTCCGGACGGCTATTGGTGAAACTGCACGAACTCTATG 1773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 AGATATGGAAAGATGATCTTGATTCCGGACGGCTATTGGTGAAACTGCACGAACTCTATG 1612 Query 1774 GTGATAGGATTCTTCCCTTTATCCCTTCTACAGAGATGTCAGTATTCCTCTAA 1826 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613 GTGATAGGATTCTTCCCTTTATCCCTTCTACAGAGATGTCAGTATTCCTCTAA 1665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82503470670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5