BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05010.1 Length=1364 Score E Sequences producing significant alignments: (Bits) Value Ahg919192 jgi|Araly1|919192|scaffold_100473.1 1661 0.0 > Ahg919192 jgi|Araly1|919192|scaffold_100473.1 Length=1012 Score = 1661 bits (899), Expect = 0.0 Identities = 968/1002 (97%), Gaps = 1/1002 (0%) Strand=Plus/Plus Query 155 gagagagagatggagagtttcccgatcatcaatctcgagaagcttaatggagaagagaga 214 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 12 GAGAGAGAGATGGAGAGTTTCCCGATCATCAGTCTCGAGAAGCTTAATGGAGAAGAGAGA 71 Query 215 gCAATCACTATGGAGAAGATCAAAGACGCTTGTGAAAACTGGGGCTTCTTTGAGTGTGTG 274 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 GCAATCACGATGGAGAAGATCAAAGACGCTTGTGAAAACTGGGGCTTCTTTGAGTGTGTG 131 Query 275 AACCATGGGATTTCACTCGAGCTTTTGGACAAAGTGGAGAAGATGACCAAGGAACATTAC 334 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| Sbjct 132 AACCATGGGATTTCACACGAGCTTTTGGACAAAGTGGAGAAGATGACGAAGGAACACTAC 191 Query 335 AAGAAGTGCATGGAAGAGAGATTCAAGGAATCGATTAAGAACAGAGGTCTTGACTCTCTT 394 ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| Sbjct 192 AAGAAGTGCATGGAAGAAAGATTCAAGGAATCGATCAAGAACAGAGGACTTGACTCTCTT 251 Query 395 CGCTCTGAAGTCAACGACGTTGACTGGGAATCCACTTTCTACCTCAAGCACCTTCCCGTC 454 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 252 CGCTCTGAAGTCAACGACGTTGACTGGGAATCAACTTTCTACCTCAAGCACCTTCCCGTC 311 Query 455 TCTAATATCTCCGATGTCCCTGATCTCGACGACGATTACAGAACGTTAATGAAAGACTTC 514 ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||| Sbjct 312 TCTAATATCTCCGATGTCCCTGATCTCGACGACGATTACCGGACGTTGATGAAAGAGTTC 371 Query 515 GCCGGAAAGATAGAGAAGTTGTCGGAGGAGCTACTGGATCTGCTGTGCGAGAATCTCGGT 574 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 372 GCCGGAAAGATAGAGAAGTTATCGGAGGAGCTATTGGATCTGCTGTGCGAGAATCTCGGT 431 Query 575 TTAGAGAAGGGTTATTTAAAAAAGGTGTTTTACGGGTCGAAAAGACCGACTTTTGGAACC 634 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 432 TTAGAGAAGGGTTATCTGAAAAAGGTGTTTTACGGGTCGAAAAGACCGACTTTTGGAACC 491 Query 635 AAAGTCAGCAATTATCCACCTTGTCCTAATCCGGACCTAGTCAAGGGTCTCCGAGCCCAC 694 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 492 AAAGTCAGCAATTATCCACCTTGTCCTAAACCGGACCTAGTCAAGGGTCTCCGAGCCCAC 551 Query 695 ACCGACGCCGGCGGCATCATCCTCCTCTTCCAAGACGACAAAGTCAGTGGACTTCAGCTT 754 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 552 ACCGACGCCGGTGGCATCATCCTCCTCTTCCAAGATGACAAAGTCAGTGGACTTCAGCTT 611 Query 755 CTTAAAGACGGCGAGTGGGTCGATGTTCCTCCGGTTAAGCATTCAATCGTCGTTAATCTC 814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 CTTAAAGACGGCGAGTGGGTCGATGTTCCTCCGGTTAAGCATTCAATCGTCGTTAATCTC 671 Query 815 GGCGATCAACTTGAGGTGATAACCAATGGGAAGTACAAGAGTGTGGAACATAGAGTGCTA 874 || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 672 GGTGATCAGCTTGAGGTGATAACCAATGGGAAGTACAAGAGTGTGGAACACAGAGTGATA 731 Query 875 TCTCAGACAGACGGAGAAGGAAGAATGTCGATCGCATCATTCTATAATCCGGGAAGCGAC 934 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 732 TCTCAGACAGACGGAGAAGGAAGAATGTCGATCGCATCATTCTACAATCCGGGAAGCGAC 791 Query 935 TCTGTTATTTTTCCGGCGCCGGAGCTGATCGGAAAAGAAGCAGAGAAGGAGAAGAAAGAG 994 ||||||||||||||||| |||||| |||||||||||||| | ||||||||| |||||||| Sbjct 792 TCTGTTATTTTTCCGGCACCGGAGTTGATCGGAAAAGAACCGGAGAAGGAGGAGAAAGAG 851 Query 995 AACTATCCGAGATTTGTGTTTGAAGATTACATGAAACTCTACTCTGCTGTCAAGTTTCAG 1054 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 852 AACTATCCGAGATTTGTGTTCGAAGATTACATGAAACTCTACTCTGCTGTCAAGTTTCAG 911 Query 1055 GCCAAGGAACCAAGGTTTGAAGCCATGAAAGCTATGGAGACAACTGTGGCCAACAATGTT 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 912 GCCAAGGAACCAAGGTTTGAAGCCATGAAAGCTATGGAGACAACTGTGGCCAACAATGTT 971 Query 1115 GGACCATTGGCCACTGCGTGAATGATATGTAACTGGTTAATA 1156 ||||||||||||||||||||||||| |||||||| |||||| Sbjct 972 GGACCATTGGCCACTGCGTGAATGA-ATGTAACTTATTAATA 1012 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51046585863 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5