BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05100.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470502 jgi|Araly1|470502|fgenesh2_kg.1__456__AT1G05100.1 1978 0.0
Ahg933819 jgi|Araly1|933819|scaffold_401807.1 551 5e-156
> Ahg470502 jgi|Araly1|470502|fgenesh2_kg.1__456__AT1G05100.1
Length=1276
Score = 1978 bits (1071), Expect = 0.0
Identities = 1212/1279 (95%), Gaps = 13/1279 (1%)
Strand=Plus/Plus
Query 1 AAACATTCaaaaaaaaaaaaaaaCCAttttttttttCTTACTCAAATCTTTTTTAGTATC 60
||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||
Sbjct 1 AAACATTCAAAAAAAAAAAAAAAACATTTCTTTTTTATTACTCTCATCTTTTTTAGTATC 60
Query 61 ATTCTCCAAATGAATTGGACTAGAGGAAAAACTTTAGGCCGTGGCTCAACGGCCACCGTT 120
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 61 ATTCTCCAAATGAATTGGACTAGAGGAAAAACTATAGGCCGTGGCTCAACAGCCACCGTT 120
Query 121 TCCGCCGCCACTTGTCACGAATCCGGCGAAACACTCGCCGTAAAATCCGCCGAGTTTCAC 180
||||||||||| ||| || |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 121 TCCGCCGCCACCTGTTACAAATCCGGCGAAACAATCGCCGTTAAATCCGCCGAGTTTCAC 180
Query 181 CGGTCGGAGTTCTTGCAAAGAGAAGCCAAGATTCTCTCCTCATTAAACTCTCCGTACGTC 240
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 181 CGGTCGGAGTTTTTGCAAAGAGAAGCCAAGATTCTCTCCTCATTGAATTCTCCGTACGTC 240
Query 241 ATCGGATACAGAGGATGCGAAATTACGAGAGAGCCCT-TCCACAACAACGGAGAAGCTAC 299
||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 241 ATCGGATACAGAGGATGCGAAATTACGAGAGAG-CCTGTCTACAACAACGGAGAAGCTAC 299
Query 300 GACTTACAGTCTTCTTATGGAGTACGCGCCGTACGGAACGTTGACCGACGTAGCGACCAA 359
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 GACTTACAATCTTCTCATGGAGTACGCGCCGTACGGAACGTTGACCGACGTAGCGATCAA 359
Query 360 GAACGGCGGCTTCATTGACGAGGCTCGGGTCGTGAAGTACACGCGCCAGATACTTCTTGG 419
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAACGGCGGTTTCATCGACGAGGCTCGGGTCGTGAAGTACACGCGCCAGATACTTCTTGG 419
Query 420 GTTGGAGTACATTCATAACTCAAAGGGAATTGCGCATTGCGACATTAAGGGAAGCAACGT 479
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTGGAGTACATTCATAACTCCAAGGGAATTGCGCATTGCGACATTAAGGGAAGCAACGT 479
Query 480 GTTGGTCGGAGAGAACGGAGAAGCCAAGATCGCTGATTTCGGGTGTGCGAAATGGGTTGA 539
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 GTTGATCGGAGAGAACGGAGAAGCCAAGATCGCTGATTTCGGATGTGCGAAATGGGTTGA 539
Query 540 ACCGGAAATAACCGAACCGGTTAGAGGAACGCCGGCGTTCATGGCTCCAGAAGCGGCGCG 599
||||||| ||||||||||||||||||||||||||| ||| |||||||| |||| ||||||
Sbjct 540 ACCGGAATTAACCGAACCGGTTAGAGGAACGCCGGTGTTTATGGCTCCGGAAGTGGCGCG 599
Query 600 TGGAGAGAGACAAGGGAAAGAGAGTGATATATGGGCGGTGGGTTGTACGGTGATAGAGAT 659
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TGGAGAAAGACAAGGGAAAGAGAGTGATATTTGGGCGGTGGGTTGTACGGTGATAGAGAT 659
Query 660 GGTTACCGGGTCTCAGCCGTGGATTGGGGCGGATTTTACCGACCCGGTTTCGGTTCTTTA 719
|||||||||||| | |||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 660 GGTTACCGGGTCCCCGCCGTGGATTGGAGCGGATTCGACCGATCCGGTTTCGGTTCTTTA 719
Query 720 CCGGGTCGGATATTTAGGTGAGTTACCAGAGCTGCCTTGCTCGCTTACGGAACAAGCAAA 779
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 720 CCGGGTCGGATATTTAGGTGAGTCACCTGAGCTGCCTTGCTCGCTTACGGAACAAGCAAA 779
Query 780 GGATTTTTTAGGAAAGTGTTTGAAAAAAGAAGCGACGGAGAGATGGACAGCGAGTCAACT 839
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 GGATTTTTTAGGAAAGTGTTTGAAAAAAGAAGCGAAGGAGAGATGGACAGCGAGTCAACT 839
Query 840 ACTAAACCATCCGTTCTTGGTT-AATAAAGAACCGGAATTGGTAACCGGTTTGGTTACGA 898
|||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTAAACCATCCCTTCTT-GTTGAATAAAGAACCGGAATTGGTAACCGGTTTGGTTACGA 898
Query 899 ACTCACCGACAAGTGTGACGGATCAAATGTTCTGGAGATCAGTGGAAGAGGAGGTGTCAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTCACCGACAAGTGTGACGGATCAAATGTTCTGGAGATCAGTGGAAGAGGAGGTGTCAG 958
Query 959 AGGACCGTTCAAGCTGGTGGGAATGTCACGAGGATGAGAGAATTGGAGTGCTAAGCTGGA 1018
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGGACCGTCCAAGCTGGTGGGAATGTCACGAGGATGAGAGAATTGGAGTGCTAAGCTGGA 1018
Query 1019 TTGGTCATGTTGTGGTGGAGTCCACATGGGACTTGGACGGTGAGGATTGGATCACGGTTC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTGGTCATGTTGTGGTGGAGTCCACATGGGACTTGGACGGTGAGGATTGGATCACGGTTC 1078
Query 1079 GACGGAAT--T-A---GTCGGTTCACATGA-AGGAGCGTTGATTATTCGATTCAATTAGT 1131
|||||||| | | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 GACGGAATAATGATTAGTCGGTTCACATGAGAGGAGCGTTGATTATTCGATTCAATTAGT 1138
Query 1132 GAAGA-TATTGTTTTAGTTTAGTAGAAGTTGAGGTTTAGAGATTTTCATGTACATTTCCT 1190
|| || |||||||||||| ||||||||| ||||||||||||| ||||||||||||| ||
Sbjct 1139 GA-GAATATTGTTTTAGTCTAGTAGAAGCTGAGGTTTAGAGAAATTCATGTACATTTGCT 1197
Query 1191 AATTCATCATTTTTTATCCCCACAAATCCAATTTTTGTTATTCATTGATTATATGTTATA 1250
||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |
Sbjct 1198 AATTCATCATTTTTTATCCCCACAAATCCAAATTTTGTTATCCATTGATAATATGTTACA 1257
Query 1251 ATATGAGTCATGATTGATT 1269
|||| | ||||||||||||
Sbjct 1258 ATATAATTCATGATTGATT 1276
> Ahg933819 jgi|Araly1|933819|scaffold_401807.1
Length=1160
Score = 551 bits (298), Expect = 5e-156
Identities = 727/924 (79%), Gaps = 69/924 (7%)
Strand=Plus/Plus
Query 62 TTCTCCAAAT-GAATTGGACTAGAGGAA-AAACTTTAGGCCGTGGCTCAACGGCCACCGT 119
|||||||||| ||| ||||||||||||| || | ||||||| ||||| || ||||||||
Sbjct 14 TTCTCCAAATGGAA-TGGACTAGAGGAAGAATC-CTAGGCCGAGGCTCGACAGCCACCGT 71
Query 120 TTCCGCCGCCACTTGTCACGAA-TCCGGCGAAA-CACTCGCCGTAAAATCCGCCGAGTTT 177
| ||||||||| |||||| || || | |||| | |||||||| |||||| ||||| ||
Sbjct 72 CTACGCCGCCACGTGTCAC-AATTCAGATGAAATC-CTCGCCGTTAAATCCTCCGAGCTT 129
Query 178 CACCGGTCGGAGTTCTTGCAAAGAGAAGCCAAGATTCTCTCCTCATTAAACTCTCCGTAC 237
|||| || |||||||||||||||||||||||||||||||| || || || ||||| |||
Sbjct 130 CACCACTCAGAGTTCTTGCAAAGAGAAGCCAAGATTCTCTCGTCGTTGAATTCTCCTTAC 189
Query 238 GTCATCGGATACAGAGGATGC-GAAATTACGAGAGAGCCCTTCCACAACAACGGAGAAGC 296
|| |||||||||||||||| | |||| | |||||| | | | ||| || | |
Sbjct 190 GTGATCGGATACAGAGGAT-CAGAAACCAAAAGAGAG---T-C-A-AAC---GGTGTCGT 239
Query 297 TACG-ACTTACAGTCTTCTT-ATGGAGTACGCGCCGTACGGAACGTTGACCGACGTAGCG 354
|||| | | | | | || || ||||||| ||| ||||||||||||||||| |||| |||
Sbjct 240 TACGTA-T-A-A-TATT-TTGATGGAGTTCGCACCGTACGGAACGTTGACTGACGCGGCG 294
Query 355 ACCAAGAACGGCGGCTTCATT-GACGAGGCTCGGGTCGTGAAGTACACGCGCCAGATACT 413
| || ||||| ||| | | |||||| ||||||||||||||||||||||| |||||||
Sbjct 295 GCGAAAAACGGAGGCAG-AGTCGACGAGACTCGGGTCGTGAAGTACACGCGCGAGATACT 353
Query 414 TCTTGGGTTGGAGTACATTCATAACTC-AAAGGGAATTGCGCATTGCGACATTAAGGGAA 472
|| |||||||| | || ||| ||||| | | | ||||||||| | |||||||
Sbjct 354 AAGAGGATTGGAGTATGTACA---CTCGAAAGGTA-TCGTGCATTGCGATGTAAAGGGAA 409
Query 473 GCAACGTG-TTGGT-CGGAGAGAACGGAGAAGCCAAGATCGCTGATTTCGGGTGTGCGAA 530
| |||||| || | |||||| || || || ||||| || || |||||||||||||| ||
Sbjct 410 GTAACGTGGTTCTTGCGGAGA-AA-GGCGAGGCCAAAATTGCAGATTTCGGGTGTGCAAA 467
Query 531 ATGGGTTGAACCG-GAAATA-AC-CGAACCGGTTA-GAGGAACGCCGGCGTTCATGGCTC 586
| ||||||| || ||| | | | | ||||||| | |||||||||||||| |||||||
Sbjct 468 ACGGGTTGA-CCAAGAATTCGAGTC-A-CCGGTTATG-GGAACGCCGGCGTTTATGGCTC 523
Query 587 CAGAAGCGGCGCGTGGAGAGAGACAAGGGAAAGAGAGTGATATATGGGCGGT-GGGTTGT 645
| || | ||||||||| |||| ||| ||||| |||||||||||||||||||| |||| ||
Sbjct 524 CGGAGGTGGCGCGTGGGGAGAAACAGGGGAAGGAGAGTGATATATGGGCGGTTGGGT-GT 582
Query 646 ACGGTGATAGAGATGGTTACCGGGT-CTC-AGCCGTGGATTGGGGCGGATTTTACCGAC- 702
|||||||| ||||||||||| |||| ||| | ||||||| | |||| ||| | ||
Sbjct 583 ACGGTGATTGAGATGGTTAC-GGGTTCTCCA-CCGTGGACAGAGGCGAATTCGAGGGAGG 640
Query 703 --CCGGTTTCGGTTCTTTACCGGGTCGGATATTTAGGTGAGT-TACCAGAGCTGCCTTGC 759
||||||||||||||||| || ||||| ||||| |||| | | || ||||| |||||
Sbjct 641 ATCCGGTTTCGGTTCTTTATCGAGTCGGGTATTTGGGTGCGACT-CCGGAGCTTCCTTGT 699
Query 760 TCGCTTACGGAACAAGCAAAGGATTTTTTAGGAAA-GTGTTTGAAAAAAGAAGCGACGGA 818
| |||| ||||| |||||||||| ||||| ||||| ||||||||| | ||||| | |||
Sbjct 700 TTGCTTGCGGAAGAAGCAAAGGACTTTTT-GGAAAAGTGTTTGAAGAGGGAAGCAAAGGA 758
Query 819 GAGATGGACAGCGAGTCAACTACTAAACCATCCGTTCTTGGTTAATAAA--G-A-A---- 870
|||||||||||||| ||||| |||||||||||||| ||| || |||| | | |
Sbjct 759 GAGATGGACAGCGACACAACTCCTAAACCATCCGTTTTTGACTACTAAACCGGACATTGA 818
Query 871 -CCGGAATTGGTAACCGGTTTGGTTACGAA-CTCACCGACAAGTGTGACGGATCAAATGT 928
|||| ||||| ||||||||||| | || |||||||||||||||||| ||||||| ||
Sbjct 819 ACCGGCTTTGGTTTCCGGTTTGGTTTC-AAGCTCACCGACAAGTGTGACAGATCAAACGT 877
Query 929 TCTGGAGATCAGTGGAAGAGGAGG 952
| |||||||||| ||||| ||||
Sbjct 878 TTTGGAGATCAGCAGAAGAAGAGG 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5