BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05170.2 Length=1837 Score E Sequences producing significant alignments: (Bits) Value Ahg311603 jgi|Araly1|311603|fgenesh1_pm.C_scaffold_1000383 2078 0.0 Ahg933809 jgi|Araly1|933809|scaffold_401797.1 1149 0.0 > Ahg311603 jgi|Araly1|311603|fgenesh1_pm.C_scaffold_1000383 Length=1224 Score = 2078 bits (1125), Expect = 0.0 Identities = 1193/1226 (97%), Gaps = 4/1226 (0%) Strand=Plus/Plus Query 318 ATGTCTG-CGAAGATCAAAGGAGAGTATTCTTCTAGAAGCTTCGTATCGAGAAAATGGAC 376 ||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTC-GACGAAGAACAAAGGAGAATATTCTTCTAGAAGCTTCGTATCGAGAAAATGGAC 59 Query 377 GATATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCAATCGGATGTGGAA 436 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 60 GATATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCGATCGGATGTGGAA 119 Query 437 TATTCCGGAATCTAAAGGCATGTCTCATCCATCTGTAACCGAAGCTGAGAGATTGAAGCT 496 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 120 TATTCCGGAATCTAAAGGCATGTCTCGTCCATCTGTAACCGAAGCTGAGAGATTGAAACT 179 Query 497 GGTCTCTGAAGGCTGCAATCCAAAAGCTCTTTACCAGAAAGAAGTCAAAAGAGATCCTCA 556 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 180 GATCTCTGAAGGCTGCAATCCAAAAACTCTTTACCAGAAAGAAGTCAAAAGAGATCCTCA 239 Query 557 GGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCATTACAGACATTGGATAAGACCAT 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCATTACAGACATTGGATAAGACCAT 299 Query 617 TTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGGTCAGTTCAGGAATCTTTACAAAACGG 676 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 300 TTCAAGCTTAGAGATGGAGTTAGCTGCAGCTAGGTCAGTTCAGGAATCTTTACAAAACGG 359 Query 677 TGCTCCTTTATCAGATGATATGGGGAAGAAGCAACCTCAGG-AACAGAGACGGTTTTTGA 735 ||||||| |||||||||||||||||||||||||||| | || || ||||||||||||||| Sbjct 360 TGCTCCTGTATCAGATGATATGGGGAAGAAGCAACCGCTGGGAA-AGAGACGGTTTTTGA 418 Query 736 TGGTCGTTGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTATTCGAGCAA 795 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TGGTCGTCGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTATTCGAGCAA 478 Query 796 CTTGGATGCCTCAAGGTGAAAAAAGGAAGAGACTAGAAGAGGAGAAGGGGATTATCATCC 855 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CGTGGATGCCTCAAGGTGAAAAAAGGAAGAGACTAGAAGAGGAGAAGGGGATTATCATCC 538 Query 856 GGTTTGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGCTATAGAAGCTG 915 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GATTCGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGCTATAGAAGCTG 598 Query 916 AGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTACCTAGAGTTGT 975 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTACCTAGAGTTGT 658 Query 976 CAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCGATGTGGGATGCAGATTTCTATG 1035 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 659 CAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCCATGTGGGATGCAGATTTCTATG 718 Query 1036 TCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAACTCTTGTTAGAC 1095 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 719 TCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAACTCTTGTCAGAC 778 Query 1096 ACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAA 1155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAA 838 Query 1156 AAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACT 1215 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 839 AAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAATTTGGTGAAAATGGGAACAAATACT 898 Query 1216 TCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGACTTGGCTTCTTATATATCAA 1275 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 899 TCCGTCATGCTACTGGACAATTATACGCCATTTCAAGGGACTTGGCTTCTTATATATCAA 958 Query 1276 TCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGCTAGGAGCTTGGTTTA 1335 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 959 TCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGTTAGGAGCTTGGTTTA 1018 Query 1336 TCGGGATTGATGTTAAACACATTGATGATAGAAGATTATGCTGCGGAACTCCTCCTGATT 1395 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1019 TTGGGATTGATGTTAAACACATTGATGACAGAAGATTATGCTGCGGAACTCCTCCTGATT 1078 Query 1396 GCGAATGGAAAGCACAAGCTGGAAACATCTGTGTAGCATCATTCGACTGGAGCTGCAGCG 1455 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1079 GTGAATGGAAAGCACAAGCTGGAAACATCTGTGTAGCATCATTCGACTGGAGCTGCAGTG 1138 Query 1456 GAATCTGCAGATCCGCAGATCGCATCAAAGAGGTTCATAGACGTTGCGGTGAAGGTGAAA 1515 ||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||| Sbjct 1139 GAATCTGCAGATCAGCAGATCGCATCAAAGAGGTTCATCGACGTTGTGGTGAAGGCGAAA 1198 Query 1516 AGGCTCTTTGGAGTGCCACGTTTTGA 1541 ||||||||||||||||||| |||||| Sbjct 1199 AGGCTCTTTGGAGTGCCACATTTTGA 1224 > Ahg933809 jgi|Araly1|933809|scaffold_401797.1 Length=1270 Score = 1149 bits (622), Expect = 0.0 Identities = 1050/1252 (84%), Gaps = 48/1252 (4%) Strand=Plus/Plus Query 317 AATGTCTG-CGAAGATCAAAGGAGAG---TATTCTTCTAGAAGCTTCGTAT-CGAGAAAA 371 |||||| | ||||||||||||||||| | ||| || |||||||| |||| | || ||| Sbjct 20 AATGTC-GACGAAGATCAAAGGAGAGCTTTTTTCGTCCAGAAGCTTAGTATCCAAG-AAA 77 Query 372 TGGACGA-TATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCAATCGGAT 430 ||||| | | ||||||||||| || ||||||||| | || || |||||||| || |||| Sbjct 78 TGGAC-ATTTTTACTCTGCTTTGGGAGCTTCTGCTTTGGGATACTCTTCACCGATAGGAT 136 Query 431 GTGGAATATTCCGGAATCTAAAGGCATGTCTC-ATCCATCTGT-A--ACCGAAGCTGAGA 486 ||||| |||||| || ||||||| |||||||| | |||||||| | || |||||||| | Sbjct 137 GTGGATTATTCCAGAGTCTAAAGACATGTCTCGA-CCATCTGTAAGTACAGAAGCTGAAA 195 Query 487 GA-TTGAAGCTGGTCTCTGAAGGCTGCAAT-CCAAAAGCTCTTTACCAGAAAGAAGTCAA 544 || || |||||| ||||||| ||||| || |||||| ||| |||||||||||||| || Sbjct 196 GACTT-AAGCTGATCTCTGAGGGCTGTGATCCCAAAA-ATCTCTACCAGAAAGAAGT-AA 252 Query 545 A-AGAGATCCTCAGGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCAT-TACAGACA 602 | | ||||||||||||||| |||||||||| |||| || |||| ||| | |||||||| Sbjct 253 ATCGTGATCCTCAGGCTTTGCTTGGAGAAGTTTCCAAGACTCATAATGC-TATACAGACA 311 Query 603 TTGGATAAGACCATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGGTCAGTTCAGGAA 662 |||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||| Sbjct 312 TTGGATAAGACCATTTCAAGTTTAGAGATGGAGTTAGCCGCAGCAAGATCAGCACAGGAG 371 Query 663 TCTTTACA-AAACGGTGCTCCTTTATCAG-ATGATATGGGGAAGAAGC-A--ACCTCAGG 717 ||||| | ||||||||||||| | || | ||||| ||| |||||||| | ||| || Sbjct 372 TCTTT-GATAAACGGTGCTCCTATGTC-GAATGATGTGGAGAAGAAGCAATTACC-GGGG 428 Query 718 AACAGAGACGGTTTTTGATGGTCGTTGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAA 777 || | ||||||| ||||||||| || ||||||||||| |||||||||||| ||||||||| Sbjct 429 AA-A-AGACGGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGAGAA 486 Query 778 GAGATTCTATTCGAGCAACTTGGATGCC-TCAAGGTGAAAAAAGGAAG-AGACTAGAAGA 835 |||||||| ||||| ||||||||||||| || |||||| ||||| ||| || |||| || Sbjct 487 GAGATTCTGTTCGAACAACTTGGATGCCTTC-AGGTGAGAAAAGAAAGAAG-TTAGAGGA 544 Query 836 GGAGAAGGGGATTATCATCCGGTTTGTCATTGGTCACAGTGCCA-CGACCGGGGGAATTC 894 |||||||| ||||| || |||||||| |||||||| ||||||| || |||| ||||||| Sbjct 545 AGAGAAGGGAATTATTATACGGTTTGTGATTGGTCATAGTGCCACCG-CCGGCGGAATTC 603 Query 895 TAGATCGAGCTATAGAAGCTGAGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATG 954 |||| ||| | || ||||| ||||| |||||||||||||||||||||||| ||||||||| Sbjct 604 TAGACCGATCCATTGAAGCAGAGGATAGGAAGCATGGAGATTTCTTGAGATTGGACCATG 663 Query 955 TTGAAGGGTACCTAGAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCAT-TTTCG 1013 ||||||| ||||| ||||| |||||||| |||||||| || |||||||| || | |||| Sbjct 664 TTGAAGGATACCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACCGC-TGTTTCA 722 Query 1014 ATGTGGGATGCAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGCAACT 1073 | |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 723 AAGTGGGATGCAGAATTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACT 782 Query 1074 CTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCA-CGGGTCTATATTGGTTGCATGAA 1132 |||||||| |||||||| |||||| |||| |||| | || |||||||| || |||||||| Sbjct 783 CTTGGGGAGACTCTTGTCAGACACAGGAAGAAAC-ATCGAGTCTATATCGGCTGCATGAA 841 Query 1133 ATCTGGCCCTGTCCTCTCTCAAAAAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTT 1192 |||||| || ||||| ||||||||||| || || ||||||||||| || || ||||| || Sbjct 842 ATCTGGTCCAGTCCTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAATATTGGAAATT 901 Query 1193 TGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAG 1252 |||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 902 TGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCAAG 961 Query 1253 GGACTTGGCTTCTTATATAT-CAATCAATCAGCATGTTCTTCACAAGTATGCGAACGAAG 1311 |||||||||||||| || | | | |||||||||||||| ||||| ||||| || || | Sbjct 962 AGACTTGGCTTCTTACAT-TGCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGG 1020 Query 1312 ATGTTTCGCTAGGAGCTTGGTTTATCGGGATTGATGTTAAACACATTGATGATAGAAGAT 1371 ||||| | |||| ||||||||||||||| ||||||||| ||| || |||||||||||| Sbjct 1021 ATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTTACACATATCGATGATAGAAGAC 1080 Query 1372 TATGCTGCGGAACTCCTCCTGATTGCGAATGGAAAGCACAAGCTGGAAACATCTGTGTAG 1431 |||| ||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| Sbjct 1081 TATGTTGCGGCACTCCTCCGGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAG 1140 Query 1432 CATCATTCGACTGGAGCTGCAGCGGAATCTGCAGATCCGCAGATCGCATCAAAGAGGTTC 1491 | ||||| ||||||| ||| || || ||||||||||| || ||||| || ||||| |||| Sbjct 1141 CTTCATTTGACTGGACCTGTAGTGGTATCTGCAGATCAGCTGATCGAATTAAAGAAGTTC 1200 Query 1492 ATA-GACGTTGCGGTGAAGGTGAAAAGGCTCTTTGGAGTGCCACG-TTTTGA 1541 | | | || || |||||| ||||| ||| |||||| |||| | |||||| Sbjct 1201 ACAAG-CGATGTGGTGAACCAGAAAACGCTATTTGGAAAGCCA-GATTTTGA 1250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68981433695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5