BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05190.1 Length=935 Score E Sequences producing significant alignments: (Bits) Value Ahg470512 jgi|Araly1|470512|fgenesh2_kg.1__466__AT1G05190.1 1227 0.0 > Ahg470512 jgi|Araly1|470512|fgenesh2_kg.1__466__AT1G05190.1 Length=866 Score = 1227 bits (664), Expect = 0.0 Identities = 751/791 (95%), Gaps = 13/791 (2%) Strand=Plus/Plus Query 1 ATGGATAAGTCTTTTCTGGATAAAACGCTCTTCTTCTTCTCTTCATCCTCCTTCTGGAGC 60 |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| Sbjct 1 ATGGATAAGTCTTTTCTGGATAAAACACTCTTCTTCTTCTCTCCATCCTCCTT-TGGAGC 59 Query 61 AGAGCTTAGAGCTCCATCATCAAATCTTATCAATGGCTTCCTCACTCGTCTCATCTTTTC 120 |||||| |||| | || | ||| |||||||||||||||||||||||| || |||| Sbjct 60 AGAGCTAAGAG---C-TC--C--ATC--ATCAATGGCTTCCTCACTCGTCTCTTCCTTTC 109 Query 121 AACCCAGGTCAGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110 AACCCAGGTCAGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTG 169 Query 181 CTCAAGTGGGTTACTCCAGTAAGACCATTGAGTGCAAAGAATCAAGGATAGGAAAGCAAC 240 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 170 CTCAAGTTGGTTACTCCAGTAAGACCATTGAGTGCAAGGAATCAAGGATAGGAAAGCAAC 229 Query 241 CGATCGCTGTACCTTCCAATGTAACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAGG 300 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 230 CGATCGCTGTACCTTCCAATGTTACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAAG 289 Query 301 GTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAGCTTACAAAGGAAGAAT 360 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 290 GTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAACTTACCAAGGAAGAAT 349 Query 361 CCGGTTTCTTAAGGGTCaaaaaaaCCGTCGAAACTAGAAGAGCCAACCAAATGCACGGCC 420 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 350 CCGGTTTCTTAAGGGTCAAAAAAACAGTCGAAACTAGAAGAGCCAACCAAATGCACGGCC 409 Query 421 TTTTCAGGACGCTTACCGATAACATGGTTGTGGGAGTATCAAAGGGATTTGAGAAAAAGC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 410 TTTTCAGGACGCTTACCGATAACATGGTTGTGGGAGTATCAAAGGGATTTGAGAAAAAAC 469 Query 481 TTATACTTGTGGGTGTTGGTTATCGTGCAACAGTAG-ACGGAAAGGAGCTGGTGCTAAAT 539 |||||||||||||||||||||||||||||||||| | | ||||| ||||||||||| ||| Sbjct 470 TTATACTTGTGGGTGTTGGTTATCGTGCAACAGTCGAAGGGAAA-GAGCTGGTGCTGAAT 528 Query 540 CTCGGGTTTTCACACCCGGTGAAGATGCAGATACCGGATAGTCTGAAAGTGAAAGTGGAA 599 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 529 CTCGGGTTCTCACACCCGGTTAAGATGCAGATACCGGATAGTCTGAAAGTGAAAGTGGAA 588 Query 600 GAGAACACAAGAATCACTGTGAGTGGATACGACAAGAGCGAAATCGGGCAGTTTGCTGCA 659 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 GAGAACACAAGAATCACTGTGAGTGGATACGACAAGAGCGAAATCGGGCAGTTTGCTGCT 648 Query 660 ACGGTTAGGAAGTGGAGGCCACCAGAGCCATACAAGGGGAAAGGAGTCAAGTATTCCGAT 719 || |||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 649 ACTGTTAGGAAGTGGAGGCCACCAGAGCCATACAAAGGTAAAGGAGTCAAGTATTCCGAC 708 Query 720 GAGATAGTTCGGAGGAAGGAAGGAAAAGCTGGAAAGAAGAAATGATCTTCATTTTTCATT 779 ||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 709 GAGATCGTTCGGAGAAAGGAAGGAAAAGCTGGAAAGAAGAAGTGATCTTCATATTTCATT 768 Query 780 ATTATCTACTT 790 ||||||||||| Sbjct 769 ATTATCTACTT 779 Score = 148 bits (80), Expect = 5e-35 Identities = 87/90 (97%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 822 TTTGCTCAAATTTGTTTAGAAATGAAGATGTTTGTGTTGGGATTCTTGAGTAAGTTTTTA 881 ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 778 TTTGCTCAAATCTGTTTAGAAATGAAGATGTTTGTTTTGGGATTCTTGAG-AAGTTTTTA 836 Query 882 AAGGAACCCATTAATTGTTTTTGATGCTCT 911 |||||||||||||||||||||||||||||| Sbjct 837 AAGGAACCCATTAATTGTTTTTGATGCTCT 866 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34691854470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5