BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05270.1 Length=1386 Score E Sequences producing significant alignments: (Bits) Value Ahg919222 jgi|Araly1|919222|scaffold_100503.1 1881 0.0 Ahg344992 jgi|Araly1|344992|fgenesh1_pg.C_scaffold_4001334 359 3e-98 Ahg887806 jgi|Araly1|887806|Al_scaffold_0125_4 211 1e-53 > Ahg919222 jgi|Araly1|919222|scaffold_100503.1 Length=1160 Score = 1881 bits (1018), Expect = 0.0 Identities = 1114/1161 (96%), Gaps = 4/1161 (0%) Strand=Plus/Plus Query 86 CCATCATCTCCTCGATTTCGATGACGATAGAGCCGACGC-A--ATCGCCGTCTTCGGAGC 142 ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| Sbjct 1 CCATCATCTCCTCGATTTCGATGACGATAGAGCCGACGCAATCATCGCCGTCGTCGGAGC 60 Query 143 CGGAGGTTCACTCTGGAGAGGACTTCGTTCACATCGATGACCCTAGGCCTACCGGCGATA 202 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGGAGGTCCACTCTGGCGAGGACTTCGTTCACATCGATGACCCTAGGCCTACCGGCGATA 120 Query 203 TCTCTTTAAGCGACAGCATAGTTAATGTGGAGAAGGATGAACTGCTCGACGAAGCGGCGG 262 |||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 121 TCTCGTTAAGTGACAGCATAGTGAATGTGGACAAGGATGAACTGCTCGACGAAGCGGCGG 180 Query 263 AGGAAGAATTTAGAGGCTCCGATTCTGTGTTTAGCGGCGGCGATGGCGGTGGAGCGGATG 322 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 181 AGGAAGAATTTAGAGGCTCCGATTCCGTTTTTAGCGGCGGCGATGGCGGTGGAGCGGATG 240 Query 323 ATGATGGCGGCGAGTGTTCATCGGAGGCTACTAAAGTGGAGCTACCGGAGGAATTGGCGA 382 |||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 241 ATGATGGCGGCGAGAGTTCATCGGAGACGATTAAAGTGGAGCTACCGGAGGAATTGGCGA 300 Query 383 AAAGTGTTGTGATTCTGACGTGCGAGTCAACAGCGGATGGTGGATCTTGCGATGTGTACT 442 || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 AAGGCGTTGTGATTCTGACGTGCGAGTCCACAGCGGATGGTGGATCTTGCGATGTGTACT 360 Query 443 TGGTTGGTACTGCTCATGTATCAAAGCAATCCTGTCTTGAAGTTGAAGCAATAATCAGCA 502 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGGTTGGGACTGCTCATGTATCAAAGCAATCCTGTCTTGAAGTTGAAGCAATAATCAGCA 420 Query 503 TCTTGAAACCAGAGGTTGTCTTCGTTGAATTGTGTTCGAGCCGATTGTCTGTTCTCAAAC 562 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 421 TCTTGAAACCAGAGGTTGTCTTCGTGGAGTTGTGTTCGAGCCGATTGTCTGTTCTCAAAC 480 Query 563 CTCAAACATTGAAGATTCCAACCATGTCGGACATGATAGAAAGTTGGAAGCAGAAACAGA 622 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTCAGACTTTGAAGATTCCAACCATGTCGGACATGATAGAAAGTTGGAAGCAGAAACAGA 540 Query 623 ACACATTCGGAATACTTTATGGATGGTTTCTTGCAAAGATCGCCAGTCATCTTGAGGTTT 682 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ACACATTTGGAATACTTTATGGATGGTTTCTTGCAAAGATCGCCAGTCATCTTGAGGTTT 600 Query 683 TTCCTGGTGCTGAGTTTCGTGTGGCGTATGAAGAGGCGATTAAATATGGCGGCAAGGTGA 742 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 601 TTCCTGGTGCTGAGTTTCGTGTAGCGTATGAAGAGGCGATTAAATATGGCGGCAAGGTGA 660 Query 743 TACTTGGTGATCGTCCTGTACAGATTACGTTAAAGAGAACATGGGCCAAGATGCCTCTAT 802 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 661 TACTTGGTGATCGTCCTGTACAGATTACGTTAAAAAGAACATGGGCCAAGATGCCTCTAT 720 Query 803 GGCACAAGGTTAAGTTTTTATACTCCATACTGTTTCAAGCTGTCTTCTTGCCGGGCGCTG 862 |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 721 GGCACAAGGTAAAGTTCTTATACTCCATACTGTTTCAAGCTGTCTTCTTGCCGAGCGCTG 780 Query 863 AGGAACTCGAGAAAATGCTGAAAGATATGGACAATGTGGATATGGTGACTTTGGTGATTC 922 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 781 AGGAACTCGAGAAAATGCTGAAAGATATGGACAATGTGGATATGGTGACTTTGGTAATTC 840 Query 923 AAGAAATGAGCAAGGAATTTCCAACTCTCATGGATACAATTGTGCATGAGCGAGACCAGT 982 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 841 AAGAAATGAGCAAGGAATTTCCGACTCTCATGGATACAATTGTGCATGAGCGAGACCAGT 900 Query 983 ACATGGCATCCTCTTTGCTGAGAGTTGCAAGTGACCATAGTTCGGTTGTAGCAGTTATCG 1042 ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 901 ACATGGCATCCTCGTTGCTGAGAGTTGCAGGTGAGCATAGTTCGGTTGTAGCAGTTATCG 960 Query 1043 GAAAAGGACATATTAATGGAATCAAGAAGAATTGGAAGCAACCTATTACGATGAATGATC 1102 ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 961 GAAAAGGGCATATTAATGGAATTAAGAAGAATTGGAAGCAACCTATAACGATGAATGATC 1020 Query 1103 TAATGGAGATACCAAGCGACAAGTCAGTGTTTACGTTAAAGAGAATAATATCATCAGTGG 1162 ||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||||| Sbjct 1021 TAATGGAGATACCGAGCGACCAGTCAGTGTTTACGATAAAGAGGATAATATCATCAGTGG 1080 Query 1163 CAGTTGCAGTTGCAGGGACAGCTATAGTTTCGGGTATACTTCTTTCAAGAAGAAAGTGAA 1222 || ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 1081 CAATTGCAGTTGCAGGGACAGCTATAGTTTCGGGTATACTTCTTGCAAGAAGAAGGTGAA 1140 Query 1223 AAAGGATTGTAATTGGGGCAG 1243 ||| |||||||||||||||| Sbjct 1141 AAAT-ATTGTAATTGGGGCAG 1160 > Ahg344992 jgi|Araly1|344992|fgenesh1_pg.C_scaffold_4001334 Length=1044 Score = 359 bits (194), Expect = 3e-98 Identities = 367/450 (82%), Gaps = 14/450 (3%) Strand=Plus/Plus Query 673 CTTGAGGTTTTTCCTGGTGCTGAGTTTCGTGTGGCGTATGAAGAGGCGATTAAATATGGC 732 ||||| ||||||||||||||||| ||||||||||| | ||||||||| | |||||||| Sbjct 502 CTTGAAGTTTTTCCTGGTGCTGAATTTCGTGTGGCATTTGAAGAGGCAAACAAATATGGT 561 Query 733 GGC-AAGGTGATACTTGGTGATCGTCCTGTACAGATTACGTTAAAGAGAACATGGGCCAA 791 ||| | ||| | | ||| |||||||| |||||||| ||| || |||||||||||| || Sbjct 562 GGCGCA-GTGTTTCCTGGCGATCGTCCAGTACAGATCACGCTACAGAGAACATGGGGTAA 620 Query 792 GATGCCTCTATGGCACAAGGTTAAGTTTTTATACTCCATACTGTTTCAAGCTGTC-TTCT 850 ||||||||||||||||| | || | | ||| |||| ||| |||||||||| ||| Sbjct 621 AATGCCTCTATGGCACAAAATAAAACTAGTGTACAGCATAGTGTCTCAAGCTGTCTTTC- 679 Query 851 TGCCG-GGCGCTGAGGAACTCGAGAAAATGCTGAAAGATATGGA-CAATG-TGGATATGG 907 ||||| | | |||||||| ||||| ||||||||||| || || | ||| | |||||| Sbjct 680 TGCCGAAAC-CCGAGGAACTTGAGAAGATGCTGAAAGACAT-GAGCGATGCT-GATATGC 736 Query 908 TGACTTTGGTGATTCAAGAAATGAGCAAGGAATTTCCAACTCTCATGGATACAATTGTGC 967 |||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||||| Sbjct 737 TGACATTGGTGATTCAAGAAATGAGCAAGGAATTTCCGTCTCTCATGGAGACACTTGTGC 796 Query 968 ATGAGCGAGACCAGTACATGGCATCCTCTTTGCTGAGAGTTGCAAGTGACCATAGTTCGG 1027 |||||||||| |||||||||||| | |||| ||||| |||||||||| |||||||| | Sbjct 797 ATGAGCGAGATAAGTACATGGCATATTATTTGTTGAGACTTGCAAGTGAGCATAGTTCAG 856 Query 1028 TTGTAGCAGTTATCGGAAAAGGACATATT-AATGGAATCAAGAAGAATTGGAAGCAACCT 1086 | || |||||| |||| | ||| ||| || || ||| |||||||||||||||| |||||| Sbjct 857 TCGTGGCAGTTGTCGGTAGAGGGCATCTTCAAGGGA-TCAAGAAGAATTGGAACCAACCT 915 Query 1087 ATTA-CGATGAATGATCTAATGGAGATACC 1115 || | | || || || ||| ||||| |||| Sbjct 916 ATAAAC-ATAAAGGAACTATTGGAGTTACC 944 > Ahg887806 jgi|Araly1|887806|Al_scaffold_0125_4 Length=858 Score = 211 bits (114), Expect = 1e-53 Identities = 201/242 (83%), Gaps = 10/242 (4%) Strand=Plus/Plus Query 879 GCTGAAAGATATGGA-CAATG-TGGATATGGTGACTTTGGTGATTCAAGAAATGAGCAAG 936 ||||||||| || || | ||| | |||||| |||| || |||||||||||||||||||| Sbjct 522 GCTGAAAGACAT-GAGCGATGCT-GATATGCTGACAATGATGATTCAAGAAATGAGCAAG 579 Query 937 GAATTTCCAACTCTCATGGATACAATTGTGCATGAGCGAGACCAGTACATGGCATCCTCT 996 ||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| ||| Sbjct 580 GAATTTCCATCTCTCATGGAGACACTTGTGCATGAGCGAGATAAGTACATGGCATA-TCT 638 Query 997 -TTGCTGAGAGTTGCAAGTGACCATAGTTCGGTTGTAGCAGTTATCGGAAAAGGACATAT 1055 ||| ||||| |||||||||| |||||||| || || |||||| |||| | ||| ||| | Sbjct 639 ATTGTTGAGACTTGCAAGTGAGCATAGTTCAGTCGTGGCAGTTGTCGGTAGAGGGCATCT 698 Query 1056 T-AATGGAATCAAGAAGAATTGGAAGCAACCTATTA-CGATGAATGATCTAATGGAGATA 1113 | || ||| |||||||||||||||| |||||||| | | || || || ||| ||||| || Sbjct 699 TCAAGGGA-TCAAGAAGAATTGGAACCAACCTATAAAC-ATAAAGGAACTATTGGAGTTA 756 Query 1114 CC 1115 || Sbjct 757 CC 758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51802733200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5