BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05385.1
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470540 jgi|Araly1|470540|fgenesh2_kg.1__494__AT1G05385.1 1068 0.0
> Ahg470540 jgi|Araly1|470540|fgenesh2_kg.1__494__AT1G05385.1
Length=674
Score = 1068 bits (578), Expect = 0.0
Identities = 644/676 (95%), Gaps = 4/676 (1%)
Strand=Plus/Plus
Query 35 TTCTGAGGTTCCTGTTGTTATCAGACAGAAAGATTCATGGGTTTCCTTGTAGCCGTCATG 94
||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 1 TTCTGAGGTTCTTGTTGTTATCAGACAGGAAGATTCATGGGTTTCCTTGTAGCTGCCATG 60
Query 95 AACTTTTCTCCTACTTTGGTGCATCACCATATGAAATCGAAGCCA-CAATGTCAAAATGA 153
|||||||||||||| ||| ||||||||||||| ||||||||| || ||||||||||||||
Sbjct 61 AACTTTTCTCCTACCTTGATGCATCACCATATCAAATCGAAG-CATCAATGTCAAAATGA 119
Query 154 AAAGCTTCGTCAAGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGT 213
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAAGCTTCTTCAGGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGT 179
Query 214 TGTTGGTGCTTCTTCG-TTCATGGCCACAATTGAGTTTTCTGGATTACAAGCTCAGGCGT 272
||| |||||||||||| || |||||| || |||||||||||||| ||||||||||||||
Sbjct 180 TGTCGGTGCTTCTTCGCTT-ATGGCCGCATTTGAGTTTTCTGGAATACAAGCTCAGGCGG 238
Query 273 CAGAGGAAAAGTTAGACGAAGGAGAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATC 332
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 CAGAGGAAAAGGTAGAAGAAGGACAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATC 298
Query 333 CTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACTTGAAATCTGCAAGAG 392
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 299 CTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACCTGAAATCTGCTAGAG 358
Query 393 AGGTTGTCAAAACCATGAGGGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTCA 452
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 359 AGGTTGTCAAAACCATGAGAGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTTA 418
Query 453 GAAGAAGTGCTGATGCTGCTAAAGAATCCATTCGTGATTATCTGAGCAATTGGAGAGGAC 512
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 GAAGAAGTGCTGATGCTGCTAAAGAATCTATTCGTGATTATCTGAGCAATTGGAGAGGAC 478
Query 513 AAAAGACTGTTGCCGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGCGCTTTGG 572
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 AAAAGACTGTTGCTGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGAGCTTTGG 538
Query 573 CGAAATTTTACTCAAAGGCAGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGA 632
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGAAATTTTACTCAAAGGCTGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGA 598
Query 633 TTTTGGATGATCTTAACAAGGCTGAAGAGTTTTTGTGACATTTTTGCTGTAACATGTTTC 692
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 TTTTGGATGATCTTAACAAGGCTGAAGAGTTCTTGTGACATTTTTGCTGTAACATGTTTC 658
Query 693 ACCCATGTTATACATA 708
|| ||||||||| |||
Sbjct 659 ACTCATGTTATATATA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27486623157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5