BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05520.1
Length=2586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470552 jgi|Araly1|470552|fgenesh2_kg.1__506__AT1G05520.1 3973 0.0
Ahg493493 jgi|Araly1|493493|fgenesh2_kg.7__2926__AT4G14160.1 1232 0.0
> Ahg470552 jgi|Araly1|470552|fgenesh2_kg.1__506__AT1G05520.1
Length=2541
Score = 3973 bits (2151), Expect = 0.0
Identities = 2348/2445 (96%), Gaps = 6/2445 (0%)
Strand=Plus/Plus
Query 3 AAAACCATGTCAGAGATGGCGAGTATGGATCCAGAAGGAATCGATGGAGTTCGTATGACG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACCATGTCAGAGATGGCGAGTATGGATCCAGAAGGAATCGATGGAGTTCGTATGACG 60
Query 63 TGGAACGTTTGGCCTCGCACCAAAGTTGAAGCAAGCAAGTGTGTGATCCCTGTCGCTGCT 122
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGAACGTTTGGCCTCGTACCAAAGTTGAAGCAAGCAAGTGTGTGATCCCTGTCGCTGCT 120
Query 123 TGTATCTCTCCGATCCGTTACCACCGGGATATCCCATCTGTTGAATATGCTCCTCTTCGT 182
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 121 TGTATCTCTCCGATCCGTTACCACCGTGATATTCCATCTGTTGATTATGCTCCTCTTCGT 180
Query 183 TGTCGCATTTGTACCGCTGCTCTTAATCCTTTTGCTCGTGTTGATTTCCTCGCCAAGATC 242
||||||| |||| ||||||||||||| |||||||| ||||||||| || ||||||||||
Sbjct 181 TGTCGCACTTGTTCCGCTGCTCTTAACCCTTTTGCCCGTGTTGATACCCACGCCAAGATC 240
Query 243 TGGATCTGTCCTATTTGCTTCCAGAGAAACCACTTCCCTCCTCACTACCATGTTATGTCC 302
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 241 TGGATCTGCCCTATTTGCTTCCAGAGAAACCACTTCCCTCATCACTACCATGCTATCTCC 300
Query 303 GAGACTAATGTCCCTTGTGAGCTCTATCCACAGTACACTACCGTTGAATACACTCTGCCT 362
|| |||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 301 GACACTAATGTGCCTTGTGAGCTGTATCCGCAGTACACTACGGTTGAATACACTCTGCCT 360
Query 363 AACCCTTCTCAGCCTACTGGTGTTGGCAATTTTGATCAGACCGGTGCTGTTTCTGGTCAG 422
|||||||||||||||||||||| ||| ||||||||||||| ||||||||||| || |||
Sbjct 361 AACCCTTCTCAGCCTACTGGTGCTGGGAATTTTGATCAGAGTGGTGCTGTTTCCGGCCAG 420
Query 423 CCTTCGCCGTCGGTGTTTGTTTTTGTCCTGGACACGTGTATGATTGAAGAGGAGTTTGGA 482
|| ||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 421 CCATCGCCTTCGGTGTTTGTTTTTGTCTTGGATACGTGTATGATTGAGGAGGAGTTTGGA 480
Query 483 TACGCGAAATCTGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCATTGGTTGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TACGCGAAATCTGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCATTGGTTGGG 540
Query 543 TTTGTCTCGTTTGGGACGCAGGCGCATGTTCACGAGCTGGGGTTTTCTGATTTGACTAAA 602
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 541 TTTGTCTCGTTTGGGACGCAGGCGCATGTTCACGAGTTGGGTTTTTCTGATTTGACTAAA 600
Query 603 GTTTATGTCTTTAGGGGAGATAAGGAGATCTCCAAAGATCAAG-TTTTGGAGCAGTTAGG 661
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 601 GTTTATGTCTTTAGGGGAGATAAGGAGATCTCCAAAGATC-AGATTTTGGAGCAGTTAGG 659
Query 662 GCTTGGTGCTTCTGGGAGACGAAACCCGGTTGGTGGTTTTCCAATGGGGAGGGATAATTC 721
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 660 GCTTGGTGCTTCTGGGAGACGAACCCCGGTTGGTGGCTTTCCAATGGGGAGGGATAATTC 719
Query 722 TGCCAATTTCGGCTATTCGGGTGTTAATAGATTCTTGTTGCCAGCTTCTGACTGTGAATT 781
| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 CGGCAATTCCGGCTATTCGGGTGTTAATAGATTCTTGTTGCCAGCTTCTGAGTGTGAATT 779
Query 782 CACGATTGATTTGCTGTTGGAAGAGCTACAGACGGATCAGTGGCCTGTCCAGGCTGGACG 841
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CACGATTGATTCGCTGTTGGAAGAGCTACAGACGGATCAGTGGCCTGTCCAAGCTGGACG 839
Query 842 GCGCCAGTCACGATGCACGGGAGTGGCTATAAGTGTGGCTACGGGACTACTTGGAGCTTG 901
|||||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 840 TCGCCAGTCTCGGTGCACGGGAGTGGCTTTAAGTGTGGCTACGGGACTGCTTGGAGCTTG 899
Query 902 TTTTCCTGGAACTGGGGCTAGAATCGTTGCTTTAATTGGAGGACCATGTTCTGAGGGGCC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTTCCTGGAACTGGGGCTAGAATCGTTGCTTTAATTGGAGGACCATGTTCTGAGGGGCC 959
Query 962 AGGCACGATTGTGTCAAAGGATCTATCAGAACCTTTGCGTTCACATAAAGATCTTGATAA 1021
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 AGGCACGATTGTGTCAAAGGATCTATCAGAACCTTTGCGTTCACATAAAGATCTCGATAA 1019
Query 1022 AGATGCGGCTCCGTTCTATAAGAAAGCGGAGAAATTTTATGATGCGCTCGCAAACCAACT 1081
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 AGATGCGGCTCCTTTCTATAAGAAAGCGGAGAAATTTTATGATGCTCTCGCAAACCAACT 1079
Query 1082 GGTTAACCAAGGACATGTACTGGACCTTTTTGCATCCGCACTTGATCAGGTTGGTGTTGC 1141
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGTGAACCAAGGACATGTACTGGACCTTTTTGCATCCGCACTTGATCAGGTTGGTGTTGC 1139
Query 1142 TGAAATGAAAGCTGCGGTTGAAAGAACTGGAGGTCTTGTTGTTTTATCAGAAAGTTTTGG 1201
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 TGAAATGAAAGCTGCGGTTGAAAGAACTGGAGGACTTGTTGTTTTATCAGAAAGTTTTGG 1199
Query 1202 CCATTCTGTATTTAAGGATTCTTTTAAGCGAGTATTTGAAGATGGCGAAGAGTCTCTCGG 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCATTCTGTATTTAAGGATTCTTTTAAGCGAGTATTTGAAGATGGCGAAGAGTCTCTCGG 1259
Query 1262 CCTTTGTTTCAATGGTACACTTGAGATCTGCTGTTCAAAGGACATAAAAATCCAAGGGAT 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CCTTTGTTTCAATGGTACACTTGAGATCTGCTGTTCAAAGGACATAAAAATCCAAGGGAT 1319
Query 1322 TATTGGACCTTGTGCGTCTTTGCAAAAGAAAGGCCCTAGCGTTGCTGATACAGTTATTGG 1381
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TATTGGGCCTTGTGCGTCATTGCAAAAGAAAGGCCCTAGCGTTGCTGATACAGTTATTGG 1379
Query 1382 GGAGGGGAATACTACACAATGGAAGATGTGTGGCCTCGATAAAAGGACTTGTTTGACAGT 1441
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 GGAGGGGAATACTACAGAATGGAAGATGTGTGGCCTCGATAAAAGTACTTGTTTGACAGT 1439
Query 1442 CTTCTTTGATCTTTCTTCTAGTGATCAATCAAGTGCTCCTGGAGGTGTAAATAACCAACT 1501
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1440 CTTCTTTGATCTTTCTTCTAGTGATCAATCAAGTACTCCTGGAGGTGGAAATAACCAACT 1499
Query 1502 ATATTTACAATTTATGACAAGCTACCAAAATTCAAAAGGTAAAACATTACAGCGAGTTAC 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1500 ATATTTACAATTTATGACAAGCTACCAAAATTCAAAAGGTAAAACATTACAGCGAGTAAC 1559
Query 1562 TACTGTTACCAGACAATGGGTAGATACTGGTCTTAGCACAGAGGAATTGGTGCAAGGTTT 1621
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1560 TACTGTTACCAGACAATGGGTAGATACTGCTCTTAGCACAGAGGAATTGGTGCAAGGTTT 1619
Query 1622 TGATCAAGAAACTGCTGCTGTGGTTGTGGCCAGATTAGCTTCCTTGAAAATGGAAACAGA 1681
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1620 TGATCAAGAAACTGCTGCTGTGGTTGTGGCCAGATTGGCCTCCTTGAAAATGGAAACAGA 1679
Query 1682 GGAGGGATTTGATGCTACGCGATGGCTGGACCGGAACCTTATTCGTCTTTGTTCTAAATT 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GGAGGGATTTGATGCTACGCGATGGCTGGACCGGAACCTTATTCGTCTTTGTTCTAAATT 1739
Query 1742 TGGTGATTACCGGAAGGATGATCCTGCTTCATTTACTCTAAATCCAAACTTTTCACTATT 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TGGTGATTACCGGAAGGATGATCCTGCTTCATTTACTCTAAATCCAAACTTTTCACTATT 1799
Query 1802 CCCTCAGTTTACGTTCAATCTCCGACGCTCACAGTTTGTGCAGGTGTTCAACAATAGTCC 1861
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1800 CCCTCAGTTTACGTTTAATCTCCGACGCTCACAATTTGTGCAGGTATTCAACAATAGTCC 1859
Query 1862 AGACGAAACTGCTTACAACCGCATGCTATTAAACCGAGAAAATATTTCGAACGCAGCTGT 1921
||| ||||||||||||| |||||||||||| |||||||||| |||||| |||||||| ||
Sbjct 1860 AGATGAAACTGCTTACAGCCGCATGCTATTGAACCGAGAAAGTATTTCAAACGCAGCCGT 1919
Query 1922 TATGATTCAGCCATCTCTAACAACATATTCGTTTAACTCACTACCTCAACCTGCATTGTT 1981
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TATGATACAGCCATCTCTAACAACATATTCGTTTAACTCACTACCTCAACCTGCATTGTT 1979
Query 1982 GGATGTTGCTTCCATTGGTGCAGACCGTATCCTCCTGTTGGATTCTTACATTAGTGTTGT 2041
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1980 GGATGTTGCTTCCATCGGTGCAGACCGTATCCTCTTGTTGGATTCTTACATTAGTGTTGT 2039
Query 2042 CGTTTTCCATGGAATGACCATTGCACAGTGGCGCAACTTGGGATATCAAAATCAGCCTGA 2101
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2040 CGTTTTCCATGGAATGACCATTGCACAGTGGCGCAACATGGGATATCAAAATCAGCCTGA 2099
Query 2102 ACACCAGGCATTTGCCCAACTCTTGGAAGCCCCTCAAGAAGATGCGCAGATGATCATTCG 2161
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2100 ACACCAGGCATTTGCACAACTCTTGGAAGCCCCTCAAGAAGATGCACAGATGATCATTCG 2159
Query 2162 TGATCGTTTCCCTGTACCAAGATTAGTTGTTTGTGATCAACATGGATCCCAGGCAAGGTT 2221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 TGATCGTTTCCCTGTACCAAGATTAGTTGTTTGTGATCAACATGGATCCCAGGCAAGGTT 2219
Query 2222 TCTGTTAGCAAAGCTAAATCCGTCAGCAACATACAACAATGCAAGCGAGATGAATGCAGG 2281
||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 2220 TCTCTTAGCAAAGCTAAATCCGTCAGCGACATACAACAATGCGAGCGAGACGAATGCAGG 2279
Query 2282 CTCTGATATAATCTTCACGGATGATGTCAGTCTTCAAGTCTTCTTCCAACATCTTCAGAA 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 CTCTGATATAATCTTCACGGATGATGTCAGTCTTCAAGTCTTCTTCCAACATCTTCAGAA 2339
Query 2342 ATTGGCTGTTCAATCTTGAGAACACAGAGGTCTCTCTGTTCTTCCATTTCAAT--TGAGA 2399
||||||||||||||||||||||||||||||||||||| | ||| | || |||||
Sbjct 2340 ATTGGCTGTTCAATCTTGAGAACACAGAGGTCTCTCTCTGCTTG-AGAG-AAGCCTGAGA 2397
Query 2400 CAAGTTCAAATAAAGAAGATGCAGTCGTCGCTCACCAAAATGCCT 2444
||||| ||||||||||||||| |||| |||||||||| |||||||
Sbjct 2398 CAAGTACAAATAAAGAAGATGTAGTCATCGCTCACCAGAATGCCT 2442
Score = 91.6 bits (49), Expect = 3e-17
Identities = 54/56 (96%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 2531 GTGATTCAACAAATTTTGTAGTTTCCATTTGGTCATAGTATTATCATCTTTTCTCT 2586
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 2487 GTGATTCAACAAATTTTGTAGTTTC-ATTTGGTCATAGTATTATTATCTTTTCTCT 2541
> Ahg493493 jgi|Araly1|493493|fgenesh2_kg.7__2926__AT4G14160.1
Length=2706
Score = 1232 bits (667), Expect = 0.0
Identities = 1546/1965 (79%), Gaps = 82/1965 (4%)
Strand=Plus/Plus
Query 435 GTGTTTGTTTTTGTCCTGGACACGTGTATGATTGAAGAGGAGTTTGGATACGCGAAATCT 494
|||||||| ||||| || || |||||||||||||| || || || ||||| || |||||
Sbjct 476 GTGTTTGTGTTTGTTCTCGATACGTGTATGATTGAGGAAGAATTGGGATATGCCAAATCG 535
Query 495 GCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCATTGGTTGGGTTTGTCTCGTTT 554
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 536 GCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCTTTGGTTGGGTTTGTGTCGTTT 595
Query 555 GGGACGCAGGCGCATGTTCACGAGCTGGGGTTTTCTGATTTGACTAAAGTTTATGTCTTT 614
|| || ||||| |||||||| || ||||||| ||||| || ||||||||| |||||||
Sbjct 596 GGTACTCAGGCTCATGTTCATGAATTGGGGTTCTCTGAGATGTCTAAAGTTTTTGTCTTT 655
Query 615 -AGGGGAGAT-AAGGAGATCTCCAAAGATCAAGTTTTGGAGCAGTTAGGGCTT-GGTGCT 671
| || | || ||| || || |||| |||||| ||||||| ||||| |||||| ||| ||
Sbjct 656 AAAGGCA-ATAAAGAAG-TCACCAAGGATCAAATTTTGGATCAGTTGGGGCTTGGGT-CT 712
Query 672 T-CT--GGGAGACGAAACCCGGTTGGTGGTTTTCC-AATGGGGAG-GGATAATTCTGCCA 726
| || ||||| | || || ||| ||||| || |||| | | || | |
Sbjct 713 TCCTCAAGGAGA-G-CTCCTACTT-CTGGGTTTCCTAA--AGGAGCGCA-AA-AC-G--G 762
Query 727 ATTTCGGCTA-TTCGGGTGTTAATAGATTCTTGTTGCCAGCTTCTGACTGTGAATTCACG 785
||| | | | ||| |||||| | |||||| ||||||| ||||| || || |||| |||
Sbjct 763 ATTCCAG--AGTTCCGGTGTTGACAGATTCCTGTTGCCCGCTTCGGAGTGCGAATACAC- 819
Query 786 A-TTGATTTGCTGTTGGAAGAGCTACAGA-CGGATCAGTGGCCTGTCCAGGCTGG--A-C 840
| | || ||||| ||||| ||||| || | | || ||||||||||| ||| | || | |
Sbjct 820 ACTGGACTTGCTTTTGGATGAGCTCCA-ATCAGACCAGTGGCCTGTTCAGCCAGGTCATC 878
Query 841 GGCGCCAGTCACGATGCAC-GGGAGTGGCTA-TAAGTGTGGCTACGGGACTACTTGGAGC 898
| | ||| ||||||||| ||| || || | | ||||| ||| | ||| | ||||||||
Sbjct 879 GTCCCCA---ACGATGCACAGGG-GTTGC-ATTGAGTGTAGCTGCAGGATTGCTTGGAGC 933
Query 899 TTGTTTTCCTGGAACTGGGGCTAGAATCGTTGCTTTAATTGGAGGACCATGTTCTGAGGG 958
||| || |||||||||||||||||||| || ||||| ||||||| |||||| | |||||
Sbjct 934 TTGCTTACCTGGAACTGGGGCTAGAATTGTAGCTTTGGTTGGAGGTCCATGTACAGAGGG 993
Query 959 GCCAGGCACGATTGTGTCAAAGGATCTATCAGAACCTTTGCGTTCACATAAAGATCTTGA 1018
|| || |||||| | ||||||||| | ||||| ||| |||| || || |||||||| ||
Sbjct 994 CCCTGGAACGATTATCTCAAAGGATTTGTCAGATCCTGTGCGCTCCCACAAAGATCTAGA 1053
Query 1019 TAAAGATGCGGCTCCGTT-CTATAAGAAAGCGGAGAAATTTTATGATGCG-CTCGCAAAC 1076
||||||||| ||||| || ||||| ||||| | || ||||||||| | | |||||
Sbjct 1054 TAAAGATGCTGCTCC-TTATTATAAAAAAGCTGTCAAGTTTTATGAT-AGTATTGCAAAG 1111
Query 1077 CAACTGGTTAAC-CAAGGACATGTACTGGACCTTTTTGCATCCGCACTTGATCAGGTTGG 1135
|| || | | | || || ||||| | |||||||| || || |||||||||||||||||
Sbjct 1112 CAGCTTG-TCGCTCAGGGTCATGTGTTAGACCTTTTCGCCTCTGCACTTGATCAGGTTGG 1170
Query 1136 TGTTGCTGAAATGAAAGCT-GCGGTTGAAAGAACTGGAGGTCTTGTTGTTTTATCAGAAA 1194
|||||||||||||||| | || |||||||| || || ||||| |||||| | || ||||
Sbjct 1171 GGTTGCTGAAATGAAAG-TAGCCGTTGAAAGTACCGGTGGTCTCGTTGTTCTGTCTGAAA 1229
Query 1195 GTTTTGGCCATTCTGTATTTAAGGATTCTTTTAAGCGAGTATTTGAAGATGGCGAAG-AG 1253
|||||||||||||||||||||| ||||| || ||| | || ||||||||||||| || ||
Sbjct 1230 GTTTTGGCCATTCTGTATTTAAAGATTCCTTCAAGAGGGTGTTTGAAGATGGCG-AGCAG 1288
Query 1254 TCTCTCGGCCTTTGTTTCAATGGTACACTTGAGATCTGCTGTTCAAAGGACATAAAAATC 1313
||||| || || || |||||||| || ||||||||| |||||||| ||||| |||||
Sbjct 1289 TCTCTTGGTCTCTGCTTCAATGGCACGCTTGAGATCAATTGTTCAAAAGACATCAAAATT 1348
Query 1314 CAAGGGATTATTGGACCTTG-TGCGTC-TTTGCAAAAGAAAGG-CCCTAGCGTTGCTGAT 1370
|||||| |||| || ||||| | | || || | |||||||||| ||| | ||||| ||
Sbjct 1349 CAAGGGGTTATCGGGCCTTGCT-CATCATTAG-AAAAGAAAGGTCCC-AATGTTGCCGAC 1405
Query 1371 ACAGTTATTGGGGAGGGGAATACTA-CACAATGGAAGATGTGTGGCCTCGATAAAAGGAC 1429
||||| ||||| ||||||||||| | | |||||| ||||||||||||| || || ||
Sbjct 1406 ACAGTCATTGGAGAGGGGAATACCAGTGC-TTGGAAGTTGTGTGGCCTCGACAAGAGTAC 1464
Query 1430 TTGTTTGACAGTCTTCTTTGATCTTTCTTCTAGTGATC-AATCAAGTGCTCCTGGAGGTG 1488
|| ||||| || ||||||||||| ||||| | | | |||| ||||||||||| ||
Sbjct 1465 CTGCTTGACTGTATTCTTTGATCTATCTTC-A---ACCGGGTCAAATGCTCCTGGAGCTG 1520
Query 1489 TAAATAAC-CAACTATATTTACAATTTATGACAAGCTACCAAAATTCAAAAGGTAAAACA 1547
||||| | || | ||||| || ||| | ||||| |||||||| | |||||||||
Sbjct 1521 TAAAT-CCTCAGTTGTATTTGCAGTTTGTCACAAGTTACCAAAACCCTGAAGGTAAAAGT 1579
Query 1548 TTACAGCGAGTTACTACTGTTACCAGACAATGGGTAGATACTGGTCTTAGCACAGAGG-- 1605
|| | || ||||| ||||| |||||||| ||||| ||||||| | | ||||||||||
Sbjct 1580 TTGCTCCGGGTTACAACTGTAACCAGACAGTGGGTGGATACTGCTGTGAGCACAGAGGTA 1639
Query 1606 -AA-TTGGTGCAAGGTTTTGATCAAGAAACTGCTGCTGTGGTTGTGGCCAGATTAGCTTC 1663
|| || |||||||| ||||| ||||||||||||||||||||| |||| |||||| ||||
Sbjct 1640 AAACTT-GTGCAAGGCTTTGACCAAGAAACTGCTGCTGTGGTTATGGCAAGATTAACTTC 1698
Query 1664 CTTGAAAATGGAAACAGAGGAGGGATTTGATGCTACGCGATGGCTGGACCGGAAC-CTTA 1722
||| |||||||||||||||||||||||||||||||| || ||||| || |||| | || |
Sbjct 1699 CTTAAAAATGGAAACAGAGGAGGGATTTGATGCTACTCGGTGGCTAGATCGGA-CTCTCA 1757
Query 1723 TTCGTCTTTGTTCTAAATTTGGTGATTACCGGAAGGATGATCCTGCTTCATTTACTCTAA 1782
||||||| ||||| ||||||||||| || | ||||||||||| | || ||||| || |
Sbjct 1758 TTCGTCTGTGTTCAAAATTTGGTGAATATAGAAAGGATGATCCAACCTCGTTTACGCTGA 1817
Query 1783 ATCCAAACTTTTCACTATTCCCTCAGTTTACGTTCAATCTC-CGACGCTCACAGTTTGTG 1841
|||| | |||||| | |||||||| || | ||| || || || || |||||||||||
Sbjct 1818 ATCCCTATTTTTCATTGTTCCCTCAATTCATGTTTAA-CTTGCGGCGGTCACAGTTTGTT 1876
Query 1842 CAGGTGTTCAACAATAGTCCAGACGAAACTGCTTACAACCGCATGCTATTAAACCGAGAA 1901
||||| || ||||| ||||| || ||||| || ||| ||||||||| ||||||| |||
Sbjct 1877 CAGGTCTTTAACAACAGTCCTGATGAAACCGCATACTTCCGCATGCTGCTAAACCGGGAA 1936
Query 1902 AATATTTCGAACGCAGCTGTTATGATTCAGCCATCTCTAACAACATATTCGTTTAACT-C 1960
|||||||| || ||| |||| ||||| || |||||||| || ||||||| || || | |
Sbjct 1937 AATATTTCAAATGCAACTGTCATGATCCAACCATCTCTGACGTCATATTCATTCAA-TGC 1995
Query 1961 ACTACCTCAACCTGCATTGTTGGATGTTGCTTCCATTGGTGCAGACC-GTATCCTCCTGT 2019
|| |||||| || || ||| ||||||| |||||||||| || ||| | || || || |
Sbjct 1996 ACCACCTCAGCCAGCTTTGCTGGATGTGGCTTCCATTGCAGCTGACAAG-ATTCTTCTAT 2054
Query 2020 TGGATTCTTACATTAGTGTTGTCGTTTTCCATGGAATGACCATTGCACAGTGGCGCAACT 2079
| ||| | || |||||||||| || |||||||||||||| || || || ||||| |||
Sbjct 2055 TAGATGCATATTTTAGTGTTGTTGTCTTCCATGGAATGACTATAGCGCAATGGCGAAACA 2114
Query 2080 TGGGATATCAAAATCAGCCTGAACACCAGGCATTTGCCCAACTCTTGGAAGCCCCTCAAG 2139
|||| ||||| ||||||||||||| |||| ||||| || | ||| |||| |||||||
Sbjct 2115 TGGGTTATCATCATCAGCCTGAACATGAGGCCTTTGCTCAGTTATTGCAAGCTCCTCAAG 2174
Query 2140 AAGATGCGCAGATGATCATTC-GTGATCGTTTCCCTGTACCAAGATTAGTTGTTTGTGAT 2198
| ||| | |||||| | | || | || |||||||| || || ||||||||||| ||||||
Sbjct 2175 AGGATTCCCAGATGTT-AGTCCGGGAGCGTTTCCCAGTCCCGAGATTAGTTGTGTGTGAT 2233
Query 2199 CAACATGGATCCCAGGCAAGGTTTCTGTTAGCAAAGCTAAATCCGTCAGCAACATACAAC 2258
||||||||||| |||||||||||| | || || ||||| ||||| ||||| || ||||||
Sbjct 2234 CAACATGGATCACAGGCAAGGTTTTTATTGGCTAAGCTGAATCCATCAGCGACTTACAAC 2293
Query 2259 AATGCAAGCGAGATGA-ATGCAGGCTCTGATATAATCTTCACGGATGATGTCAGTCTTCA 2317
||||||| ||||||| | || || || || ||||||||||| || ||||| || || ||
Sbjct 2294 AATGCAAACGAGATGTCA-GCTGGGTCAGACATAATCTTCACTGACGATGTGAGCCTGCA 2352
Query 2318 AGTCTTCTTCCAACATCTT-CAGAAATTGGCTGTTCAATCTTGAG 2361
|||||| || | |||||| | |||| |||| || ||||| ||||
Sbjct 2353 AGTCTTTTTTGAGCATCTTTC-GAAACTGGCCGTGCAATCCTGAG 2396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97511027200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5