BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05680.1 Length=1518 Score E Sequences producing significant alignments: (Bits) Value Ahg470572 jgi|Araly1|470572|fgenesh2_kg.1__526__AT1G05680.1 2351 0.0 Ahg470571 jgi|Araly1|470571|fgenesh2_kg.1__525__AT1G05670.1 1581 0.0 > Ahg470572 jgi|Araly1|470572|fgenesh2_kg.1__526__AT1G05680.1 Length=1503 Score = 2351 bits (1273), Expect = 0.0 Identities = 1424/1496 (95%), Gaps = 13/1496 (1%) Strand=Plus/Plus Query 1 ACACAACAAAAACTAGAGTCAGTAACAACACAAG-ATTAAAAAGAAGGAGAAAATGAGAG 59 ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| Sbjct 1 ACACAACAAAAACTAGAGTCAGTAAAAACACAAGAATTAAAAAGAAGAAGAAAATGAGAG 60 Query 60 AAGGATCTCATCTTATCGTCTTGCCTTTCCCAGGACAAGGCCACATAACTCCAATGTCCC 119 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGGATCTCATCTTATCGTCCTGCCTTTCCCAGGACAAGGCCACATAACTCCAATGTCCC 120 Query 120 AGTTCTGCAAACGCTTAGCCTCAAAAGGTCTTAAGCTCACTCTGGTCCTCGTCTCCGACA 179 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 AGTTCTGCAAACGCTTAGCCTCAAAAGGTCTTAAGCTCACTCTTGTCCTCGTCTCCGACA 180 Query 180 AACCCTCTCCTCCATACAAAACAGAGCACGACTCAATCACTGTCTTCCCCATCTCCAACG 239 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 181 AACCCTCTCCTCCATACAAAACAGAGCACGACTCAATTACTGTCTTCCCCATCTCCAATG 240 Query 240 GCTTCCAAGAAGGCGAGGAACCATTACAAGACCTCGATGATTACATGGAAAGAGTAGAAA 299 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCTTCCAAGAAGGCGAGGAGCCATTACAAGACCTCGATGATTACATGGAAAGAGTAGAAA 300 Query 300 CCAGCATCAAAAACACCTTACCGAAGTTGGTTGAAGACATGAAACTGTCGGGAAATCCAC 359 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | Sbjct 301 CCAGCATCAAAAACACCTTACCGAAGTTGATTGAAGACATGAAACAGTCGGGAAATCCTC 360 Query 360 CTAGGGCTATCGTGTACGACTCCACCATGCCATGGCTTCTTGATGTAGCTCATAGTTATG 419 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 361 CTAGGGCTATCGTGTACGACTCCACCATGCCGTGGCTTCTTGATGTAGCTCATAGTTATG 420 Query 420 GATTGAGCGGTGCCGTGTTTTTCACGCAACCTTGGCTTGTCACAGCTATTTACTACCATG 479 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGTTGAGCGGTGCCGCGTTTTTCACGCAACCTTGGCTTGTCACAGCTATTTACTACCATG 480 Query 480 TTTTCAAGGGTTCGTTCTCTGTACCGTCTACAAAGTACGGTCACTCGACATTAGCATCTT 539 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | Sbjct 481 TTTTCAAGGGTTCGTTCTCTGTACCGTCTACAAAGTACGCTCACTCAACATTAGCATCAT 540 Query 540 TCCCTTCGTTCCCGATGCTGACTGCAAATGATTTGCCGTCTTTCCTCTGC-GAATCGTCC 598 ||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||| Sbjct 541 TCCCTTCCTTCCCGATGCTGAATGCAAATGATTTGCCGTCTTTCCTCT-CTGAATCGTCC 599 Query 599 TCATACCCGAATATACTGAGGATTGTGGTGGATCAGCTCTCAAACATTGATCGAGTCGAC 658 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct 600 TCATACCCGAATATACTAAAGATTGTGGTGGATCAGCTCTCAAACATTGATCGAGTAGAC 659 Query 659 ATAGTGTTGTGCAACACTTTCGATAAATTGGAGGAAAAGTTGTTGAAATGGGTCCAAAGC 718 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 660 ATAGTGTTGTGCAACACTTTCTATAAATTGGAGGAAAAGTTGTTGAAATGGGTCCAAAGC 719 Query 719 TTGTGGCCAGTCTTGAATATTGGACCAACGGTTCCATCGATGTATTTAGACAAACGACTG 778 |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTGTGGCCTGTCTTGAACATAGGACCAACGGTTCCATCGATGTATTTAGACAAACGACTG 779 Query 779 TCTGAAGACAAGAACTACGGTTTTAGCCTCTTCAATGCGAAAGTCGCTGAATGCATGGAG 838 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 780 TCTGAAGACAAGAACTACGGTTTTAGCCTCTTCAATGCGAAAGTTGTTGAATGCATGGAG 839 Query 839 TGGCTAAACTCAAAGGAGCCTAATTCTGTTGTCTATTTATCATTCGGAAGTTTGGTGATT 898 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 840 TGGCTAAACTCAAAGCAGCCTAATTCTGTTGTCTATGTATCATTCGGAAGTTTGGTGATT 899 Query 899 CTAAAAGAAGATCAAATGTTGGAACTCGCTGCGGGTCTGAAACAGAGCGGACGTTTCTTT 958 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 900 CTAAAAGAAGATCAAATGTTGGAACTTGCTGCGGGTCTGAAACAGAGCGGATGTTTCTTT 959 Query 959 CTGTGGGTTGTGAGAGAGACAGAGACACACAAACTTCCAAGAAACTATGTCGAGGAAATC 1018 |||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||||| Sbjct 960 TTGTGGGTTGTAAGAGAGACAGAGACAGACAAAATTCCAAGAAACTATGTAGAGGAAATC 1019 Query 1019 GGTGAAAAAGGACTTATTGTAAGCTGGAGTCCTCAGCTTGACGTACTTGCACATAAATCA 1078 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GGTGAGAAAGGACTAATTGTAAGCTGGAGTCCTCAGCTTGACGTACTTGCACATAAATCA 1079 Query 1079 ATCGGTTGTTTCTTGACACACTGTGGATGGAACTCGACGTTAGAGGGATTGAGTTTGGGA 1138 |||||||||||||| || || |||||||||||||||| |||||| ||||||||||||||| Sbjct 1080 ATCGGTTGTTTCTTAACCCATTGTGGATGGAACTCGATGTTAGAAGGATTGAGTTTGGGA 1139 Query 1139 GTTCCAATGATTGGTATGCCACACTGGACTGATCAGCCCACGAATGCTAAGTTCATGCAG 1198 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1140 GTTCCAATGATTGGTATGCCACACTGGACTGATCAGCCCACAAATGCTAAGTTCATGGAG 1199 Query 1199 GATGTGTGGAAGGTTGGGGTAAGGGTTAAGGCAGAAGGTGATGGGTTTGTgagaagagaa 1258 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1200 GATGTGTGGAAGGTTGGGGTTAGGGTTAAGGCAGAAGATGATGGGTTTGTGAGAAGAGAA 1259 Query 1259 gagattatgagaagtgtggaagaagttatggagggagagaaagggaaagagattagaaag 1318 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1260 GAGATTGTGAGAAGTGTGGGAGAAGTTATGGAGGGAGAGAAAGGGAAAGAGATTAGAAAG 1319 Query 1319 aaTGCTGAGAAATGGAAAGTGTTGGCTCAAGAGGCAGTTTCTGAAGGAGGTAGCTCTGAT 1378 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 AATGCTGAGAAGTGGAAAGTGTTGGCTCAAGAGGCAGTTTCTGAAGGAGGTAGCTCTGAT 1379 Query 1379 AAGAGCATCAATGAGTTTGTTTCTATGTTTTGTTGAATGATTTAAATTGATATGTTCAAA 1438 ||||||||||||||||||||||||||||||| || ||| || |||| ||| | || Sbjct 1380 AAGAGCATCAATGAGTTTGTTTCTATGTTTTATT-AAT--TTG---TTGA-ATGATGGAA 1432 Query 1439 AGTACATCGTCTTTTGCA-AGTCCAATTGTAATTCTTGTTGTTGTTGTAGTAATAA 1493 | | |||||||||||||| | ||||||||| ||| ||||||| ||||||||||||| Sbjct 1433 ATTGCATCGTCTTTTGCATA-TCCAATTGTTATTGTTGTTGT-GTTGTAGTAATAA 1486 > Ahg470571 jgi|Araly1|470571|fgenesh2_kg.1__525__AT1G05670.1 Length=3500 Score = 1581 bits (856), Expect = 0.0 Identities = 1126/1258 (90%), Gaps = 11/1258 (1%) Strand=Plus/Plus Query 50 AAA-ATGAGAGAAGGATCTCATCTTATCGTCTTGCCTTTCCCAGGACAAGGCCACATAAC 108 ||| |||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||||| Sbjct 2 AAAGATGAAAGAAGGATCTCATGTTATCGTTTTGCCTTTCCCAGCACAAGGCCACATAAC 61 Query 109 TCCAATGTCCCAGTTCTGCAAACGCTTAGCCTCAAAAGGTCTTAAGCTCACTCTGGTCCT 168 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 62 TCCAATGTCCCAATTCTGTAAACGCTTAGCCTCAAAAGGTCTTAAGCTCACTCTTGTCCT 121 Query 169 CGTCTCCGACAAACCCTCTCCTCCATACAAAACAGAGCACGACTCAATCACTGTCTTCCC 228 ||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||| Sbjct 122 CGTTTCCGACAATCCCTCTCCGCCATACAAAACAGAGCACGACTCAATCGCTGTCGTCCC 181 Query 229 CATCTCCAACGGCTTCCAAGAAGGCGAGGAACCATTACAAGACCTCGATGATTACATGGA 288 ||||||||| || ||| ||||||| ||||||| || ||||||||| |||||||||||||| Sbjct 182 CATCTCCAATGGTTTCGAAGAAGGTGAGGAACGATCACAAGACCTAGATGATTACATGGA 241 Query 289 AAGAGTAGAAACCAGCATCAAAAACACCTTACCGAAGTTGGTTGAAGACATGAAACTGTC 348 |||||| ||| ||||||||||||||| |||||||||| || | ||||||||||||||||| Sbjct 242 AAGAGTGGAAGCCAGCATCAAAAACAGCTTACCGAAGCTGATAGAAGACATGAAACTGTC 301 Query 349 GGGAAATCCACCTAGGGCTATCGTGTACGACTCCACCATGCCATGGCTTCTTGATGTAGC 408 ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 302 GGGAAATCCTCCTAGGGCTCTCGTGTACGACTCCACCATGCCGTGGCTTCTTGATGTAGC 361 Query 409 TCATAGTTATGGATTGAGCGGTGCCGTGTTTTTCACGCAACCTTGGCTTGTCACAGCTAT 468 ||||| |||||| |||||||||||||||||||||||||| |||||| ||||| ||||||| Sbjct 362 TCATACTTATGGTTTGAGCGGTGCCGTGTTTTTCACGCAGCCTTGGATTGTCTCAGCTAT 421 Query 469 TTACTACCATGTTTTCAAGGGTTCGTTCTCTGTACCGTCTACAAAGTACGGTCACTCGAC 528 |||||| ||||||||||| || |||||||||||||||| |||||||||||||||||| || Sbjct 422 TTACTATCATGTTTTCAAAGGCTCGTTCTCTGTACCGTATACAAAGTACGGTCACTCAAC 481 Query 529 ATTAGCATCTTTCCCTTCGTTCCCGATGCTGACTGCAAATGATTTGCCGTCTTTCCTCTG 588 ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 482 GTTAGCATCTCTCCCTTCGTTCCCGATGCTAAATGCAAATGATTTGCCGTCTTTCCTCTG 541 Query 589 CGAATCGTCCTCATACCCGA-ATATACTGAGGATTGTGGTGGATCAGCTCTCAAACATTG 647 ||||||||||| ||||| | ||||||| |||| |||| | ||||||||||||||||||| Sbjct 542 TGAATCGTCCTCTTACCC-ATATATACTAAGGACTGTGATCGATCAGCTCTCAAACATTG 600 Query 648 ATCGAGTCGACATAGTGTTGTGCAACACTTTCGATAAATTGGAGGAAAAGTTGTTGAAAT 707 ||||||| || ||||| || |||||||| |||||||||||||| ||||||||| |||| | Sbjct 601 ATCGAGTTGATATAGTTTTATGCAACACCTTCGATAAATTGGAAGAAAAGTTGCTGAAGT 660 Query 708 GGGTCCAAAGCTTGTGGCCAGTCTTGAATATTGGACCAACGGTTCCATCGATGTATTTAG 767 ||||||||||| ||||||| ||| |||| || |||||||| |||||||| |||||||||| Sbjct 661 GGGTCCAAAGCGTGTGGCCTGTCCTGAACATAGGACCAACTGTTCCATCAATGTATTTAG 720 Query 768 ACAAACGACTGTCTGAAGACAAGAACTACGGTTTTAGCCTCTTCAATGCGAAAGTCGCTG 827 | || |||||| |||||||||| |||||||| || ||||| ||| |||||||||||||| Sbjct 721 ATAAGCGACTGCCTGAAGACAAAAACTACGGATTCAGCCTTTTCGGTGCGAAAGTCGCTG 780 Query 828 AATGCATGGAGTGGCTAAACTCAAAGGAGCCTAATTCTGTTGTCTATTTATCATTCGGAA 887 ||||||||||||||||||| | |||| |||||| ||| ||||| ||| ||||||| || | Sbjct 781 AATGCATGGAGTGGCTAAATTTAAAGCAGCCTAGTTCAGTTGTTTATGTATCATTTGGTA 840 Query 888 GTTTGGTGATTCTAAAAGAAGATCAAATGTTGGAACTCGCTGCGGGTCTGAAACAGAGCG 947 | |||||| ||||||||||||||||| || | |||||||| ||||||||||||||||||| Sbjct 841 GCTTGGTGGTTCTAAAAGAAGATCAACTGATAGAACTCGCGGCGGGTCTGAAACAGAGCG 900 Query 948 GACGTTTCTTTCTGTGGGTTGTGAGAGAGACAG--AGACACACAAACTTCCAAGAAA-CT 1004 | | ||||||| ||||||||||||||| | | | ||| | ||||||||||| |||| || Sbjct 901 GCCATTTCTTTTTGTGGGTTGTGAGAG-G-CGGGGAGAAAAACAAACTTCCA-GAAAACT 957 Query 1005 ATGTCGAGGAAATCGGTGAAAAAGGACTTATTGTAAGCTGGAGTCCTCAGCTTGACGTAC 1064 || | |||||||| ||||| |||||||| || || ||||||||||| || ||||| || | Sbjct 958 ATATAGAGGAAATTGGTGAGAAAGGACTGATCGTGAGCTGGAGTCCACAACTTGAAGTTC 1017 Query 1065 TTGCACATAAATCAATCGGTTGTTTCTTGACACACTGTGGATGGAACTCGACGTTAGAGG 1124 || |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1018 TTACACATAAATCGATCGGTTGTTTCTTGACACATTGTGGATGGAACTCGACGTTAGAGG 1077 Query 1125 GATTGAGTTTGGGAGTTCCAATGATTGGTATGCCACACTGGACTGATCAGCCCACGAATG 1184 || |||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||| Sbjct 1078 GACTGAGTTTGGGAGTTCCAATGATTGGTATGCCACATTGGGCAGATCAGCCCACAAATG 1137 Query 1185 CTAAGTTCATGCAGGATGTGTGGAAGGTTGGGGTAAGGGTTAAGGCAGAA-GGTGATGGG 1243 ||||||||||| ||||||||||||| |||||||| |||||||| ||| || ||||||||| Sbjct 1138 CTAAGTTCATGGAGGATGTGTGGAAAGTTGGGGTTAGGGTTAAAGCA-AACGGTGATGGG 1196 Query 1244 TTTGTgagaagagaagagattatgagaagtgtggaagaagttatggagggagagaaag 1301 || |||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||| Sbjct 1197 TTCGTGAGAAGAGGAGAGATTGTGAGACGTGTGGGAGAAGTTATGGAGGGAGAGAAAG 1254 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56830645540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5