BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05690.1 Length=1660 Score E Sequences producing significant alignments: (Bits) Value Ahg919273 jgi|Araly1|919273|scaffold_100554.1 1912 0.0 > Ahg919273 jgi|Araly1|919273|scaffold_100554.1 Length=1259 Score = 1912 bits (1035), Expect = 0.0 Identities = 1193/1268 (94%), Gaps = 16/1268 (1%) Strand=Plus/Plus Query 206 TTTTCAATTCGCGGGTTTGATTCCATAGCTTCTTCAGATCATACATTCTCGCAAGTGTTC 265 |||||||||| ||||||||||| || |||||||||||| |||||||||| |||||| || Sbjct 1 TTTTCAATTCTCGGGTTTGATTTGATGGCTTCTTCAGATGATACATTCTCACAAGTGATC 60 Query 266 GATA-CGG-G-AGTAGAAGAAGAAGAGTCTTTCTATGCTCCTGATCATGATGTCTTGACT 322 |||| || | || |||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 61 GATATAGGAGTAGAAGAAGAAGAAGAGTCTTTCTATGCACCTGATGATGATGTCTTGACT 120 Query 323 CTGCTTCAACCTAACTTCACCAGCAACGATGTCTAGTAGTACCAAGAACATTCCAAAACC 382 |||||||||||| ||||||||| ||||||| |||||| | ||||||||||||||||||| Sbjct 121 CTGCTTCAACCT-ACTTCACCACCAACGATATCTAGT-G--CCAAGAACATTCCAAAACC 176 Query 383 TCCTCCTCTTCCTTGTATTACCTACCAGCGTTTTCAATCTAGTACAAGGAAACCTTCGAG 442 ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| || Sbjct 177 TCCTCCTCTTCCTTGTATTACCTACCAGCGTTTCCAAGCTAGTACAAGGAAAACTTCTAG 236 Query 443 CTTAAT-GCGCCTTGTGCCTAAAGAAGCACTTGAAACTTGGGATAAGCTTTTCAAGGAAG 501 ||| || |||||||||||||||||||||| | |||||||||||||||||||| ||||||| Sbjct 237 CTT-ATCGCGCCTTGTGCCTAAAGAAGCAGTAGAAACTTGGGATAAGCTTTTTAAGGAAG 295 Query 502 GATCTGGAGCAGATACATATGTTGAAACCGATAACAAGTCTCACTTTCCTGCCCATTCAA 561 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 296 GATTTGGAGCAGATACATATGTTGAAACCGATAACAAATCTCACTTTCCTGCCCATTCAA 355 Query 562 GTGTCCTGGCTGCAGCCTCACCAGTTATAGCGACACTTCTGAATCAATCGAGGGATAAGA 621 |||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| | Sbjct 356 GTGTCCTGGCTGCAGCCTCACCAGTTATGGCGAAACTTTTGAATCAATCGAGGGATAAAA 415 Query 622 ATGGGAATACATACCTCAAAATCCATGGAGTTCCTTGTGAAGCAGTCTACATGTTCATTA 681 ||||||| |||||||||||||||| ||||| |||| |||||||||| ||||||||||| Sbjct 416 ATGGGAAAACATACCTCAAAATCCCCGGAGTGCCTTATGAAGCAGTCCACATGTTCATTC 475 Query 682 GGTTTCTATACTCTTCCTGCTACGAGGAGGAAGAAATGAAGAAGTTTGTGCTCCATTTAT 741 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 476 GGTTTCTATACTCTTCCTGCTACGAGGAGGAAGAAATGAAGAAGTATGTGCTCCACTTAT 535 Query 742 TGGTTCTGTCACATTGCTACTCGGTCCCATCTCTTAAAAGACTTTGTGTAGAGATTCTCG 801 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 536 TGGTTCTGTCACATTGCTACTCGGTCCCATCTCTTAAAAGAGTTTGTGTAGAGATTCTCG 595 Query 802 ATCAAGGATGGATTAACAAGGAGAATGTGATCGATGTGCTTCAACTAGCGAGAAACTGTG 861 ||||||||||||||||||||||||||||||| || ||||| ||| |||| |||||||||| Sbjct 596 ATCAAGGATGGATTAACAAGGAGAATGTGATAGACGTGCTACAATTAGCAAGAAACTGTG 655 Query 862 ACG-TGACAAGGATTTGCTTTGTATGTCTTTCCATGGTCATCAAAGACTTCAAATCTGTA 920 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 ACGCT-ACAAGGATTTGCTTTGTATGTCTTTCCATGGTCATCAAAGACTTCAAATCTGTA 714 Query 921 TCTTCAACAGAGGGATGGAAAGTGATGAAACGCTCTAATCCTTTGCTCGAACAAGAGCTC 980 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 715 TCTTCAACAGAGGGATGGAAAGTGATGAAACGCGCTAATCCTTTGCTTGAACAAGAGCTC 774 Query 981 ATTGAGGCAGTCATCGAATCCGACAGTAGGAAACAAGAAAGAA-GAAGAAAACTGGAGGA 1039 |||||||||||||||||| | |||| ||||||||||||||||| ||| |||||| ||||| Sbjct 775 ATTGAGGCAGTCATCGAAGCAGACACTAGGAAACAAGAAAGAAGGAA-AAAACTTGAGGA 833 Query 1040 GAGAGAAGTGTATTTGCAGCTCTATGAAGCCATGGAAGCTCTTGTCCACATATGTCGTGA 1099 ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | || Sbjct 834 GAGAGAAGTGTATATGCAGCTTTATGAAGCCATGGAAGCTCTTGTCCACATATGTAGCGA 893 Query 1100 AGGTTGTGGGACAATTGGACCTCGCGATAAGGCCCTTAAAGGAAGCCATACCGTGTGTAA 1159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 AGGTTGTGGGACAATTGGACCTCGCGATAAGGCCCTTAAAGGAAGCCATACCGTGTGTAA 953 Query 1160 ATTCCCGGCGTGTAAAGGGCTTGAAGGTGCGCTCAGACATTTCTTGGGATGCAAGTCTAG 1219 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 954 ATTCCCGGCGTGTAAAGGGCTTGAAGGTGCGCTCAGACATTTCTTGGGATGCAAGTCCAG 1013 Query 1220 GGCTTCATGTTCT-CATTGCAAAAGGATGTGGCAGCTTCTTCAGCTTCACTCTTGTATCT 1278 |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1014 GGCTTCATGT-CTTCATTGCAAAAGAATGTGGCAGCTTCTTCAGCTTCACTCTTGTATCT 1072 Query 1279 GTGATGATTCTAATTCTTGCAAAGTTTCTCTCTGCTGGAATTTCAAGGAGAAAATGAAGA 1338 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 GTGACGATTCTAATTCTTGCAAAGTTTCTCTCTGCTGGAATTTCAAGGAGAAAATGAAGA 1132 Query 1339 AGCTTAGCAAGAAAGAACAATCTAAATGGCGATTGCTTGTAGAAAACATTATTAGGGCGA 1398 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1133 AGCTTAGCAAGAAAGAACAATCTAAATGGCGATTGCTTGTAGAAAACATTATTACGGCGA 1192 Query 1399 GGAACAGTCTCGGGCCCTTCTCGTCACGTTCTTCTGGTTTGATATAGAAACAGGTTTTAG 1458 ||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| Sbjct 1193 AGAACAGTCTCGGGCCCTTCTCTTCACGTCCTTCTGGTTTGATATAGAA-CAGGTTTTAG 1251 Query 1459 ATTTTAGT 1466 ||||||| Sbjct 1252 TTTTTAGT 1259 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62239460330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5