BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05805.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470588 jgi|Araly1|470588|fgenesh2_kg.1__542__AT1G05805.1 2012 0.0
> Ahg470588 jgi|Araly1|470588|fgenesh2_kg.1__542__AT1G05805.1
Length=1378
Score = 2012 bits (1089), Expect = 0.0
Identities = 1317/1418 (93%), Gaps = 51/1418 (4%)
Strand=Plus/Plus
Query 10 TTTTCTTTTAGAAACCAAACTTTTCAGATTTCTCTCTCTCCATTTGGCGATAGAAGAAGT 69
||||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1 TTTTCTTTTCGAAACCAAACTTTGCAAATCTCTCTCTCTCCATTTGGCGATAGAAGAAGT 60
Query 70 CATGTACCAATCATCATCCTCCACGTCATCATCATCGCAGAGATCATCGCTTCCCGGCGG 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATGTACCAATCATCATCCTCCACGTCATCATCATCGCAGAGATCATCGCTTCCCGGCGG 120
Query 130 CGGAGGACTGATCCGTTACGGCTCAGCTCCGGGATCGTTTCTAAACTCTGTGGTTGACGA 189
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 121 CGGAGGACTGATCCGTTACGGCTCAGCTCCGGGATCGCTCCTAAACTCTGTGGTTGACGA 180
Query 190 AGTCATCGGAGGAGGCTCATCAAACGCTCGTGACTTCACCGGCTATCAACCGTCGTCGGA 249
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AGTCATCGGAGGAGGGGCATCAAACGCTCGTGACTTCACCGGTTATCAACCGTCGTCGGA 240
Query 250 TAACTTCATCGGTAACTTT-TTCACCGGAGCTGCTGACTCATCCTCGCTGAGATCCGATT 308
||||||||||||||| ||| |||||| | || ||||||||||||||||||||||||||||
Sbjct 241 TAACTTCATCGGTAA-TTTCTTCACC-G-GC-GCTGACTCATCCTCGCTGAGATCCGATT 296
Query 309 CGACGACTTGTGGAGTCAACAACTCATCCGACGGACAGAAACAGCTAGGCAATAACAATA 368
|||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 297 CGACGACTTGTGGAGT---CAACTCATCCGACGGACAGAAACAGCTAGG------CAATG 347
Query 369 ATAATAATAGTAATAAAGATATCTTCCTCGACAGATCCTACGGTGGATTCAACGAGATCT 428
||||| | |||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 348 ATAAT--GA-TAATAAAGATATCTTCCTGGACAGAACCTACGGTGGATTCAATGAGATCT 404
Query 429 CGCAACAACACAAGAGCAACGACATCGGAGGAGGAAACAGCTCAGGA---TCTTACTCTC 485
|||||||||||||||||||||||||| || ||||| ||||||||| ||||||||||
Sbjct 405 CGCAACAACACAAGAGCAACGACATC---GGTGGAAATAGCTCAGGATCTTCTTACTCTC 461
Query 486 TCGCTAGACAACGTAGCTCTCCCGCCGATTTCTTCACCTACCTCGCCTCAGATAAAAACA 545
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 462 TCGCTAGACAACGTAGCTCTCCCGCCGATTTCTTCACCTACCTCTCCGCAGATAAAAACA 521
Query 546 ATTTCTCGTTGAACCAACCAACCAGTGATTATAGTCCGCAAGGAGGGTCTAATGGGGGAC 605
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 522 ATTTCTCGTTGAACCAACCAACCAGTGATTATAATCCGCAAGGGGGGTCTAATGCGGGAC 581
Query 606 GAGGACATTCCAGATTGAAGTCTCAGCTAAGCTTCACGAATCACGACTCTCTGGCTCGGA 665
|||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 582 GAGGACATTCGAGATTGAAGTCTCAGCTAAGCTTCACGAGTCACGATTCTCTGGCTCGGA 641
Query 666 TCAACGAGGTCAATGAGACCCC-AGTCCACGACGGTTCAGGCCATTCGTTTTCTGCGGCT 724
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 642 TCAACGAGGTCAATGAGACCCCTA-TCCATGACGGTTCAGGCCATTCGTTTTCTGCGGCT 700
Query 725 AGCTTTGGTGCAGCCA-CTACTGATTCTTGGGATGACGGTTCCGGTTCGATAGGGTTTAC 783
||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 701 AGCTTTGGTGCCG-CAGCTACTGATTCTTGGGATGACGGTTCCGGTTCAATAGGGTTTAC 759
Query 784 CGTGACTAGGCCCAGTAAACGATCCAAGGACATGGACTCTGGTCTCTTTTCGCAGTATAG 843
||||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 760 CGTGACTCGACCCAATAAACGATCCAAGGACATGGACTCTGGTCTCTTTTCACAGTATAG 819
Query 844 TCTTCCTTCAGACACTTCAATGAACTACATGGATAACTTCATGCAGCTTCCAGAAGATTC 903
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 820 TCTTCCTTCAGACACTTCAATGAACTATATGGATAACTTCATGCAGCTTCCGGAAGATTC 879
Query 904 TGTACCCTGCAAAATCCGGGCCAAACGCGGCTGCGCCACCCATCCTAGAAGCATCGCTGA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 880 TGTACCCTGCAAAATCCGGGCCAAACGCGGCTGCGCCACCCATCCTAGAAGCATCGCCGA 939
Query 964 GCGGGAGAGGAGAACGAGAATAAGTGGGAAGCTAAAGAAGCTACAAGATCTTGTCCCCAA 1023
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 940 GCGGGAGAGGAGAACGAGAATAAGCGGGAAGCTAAAGAAGCTACAAGATCTTGTCCCCAA 999
Query 1024 CATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGG 1059
Query 1084 CCTTCAGCATCAACTTCAGAATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGGTGCAG 1143
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1060 CCTTCAACATCAACTTCAGAATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGATGCAG 1119
Query 1144 TGAGAAACCAAGCTAGCTCAAACCCAAAGGTAGGGTCATCCTAATTTTATTTGCATTGTT 1203
||||| |||||||||||| | ||||||||||| |||||| |||||
Sbjct 1120 TGAGAGACCAAGCTAGCT------------T-----CATCCTAATTTGATTTGCGTTGTT 1162
Query 1204 CCGATTTTATCATATGAGAGAATTAGAGAAGATGTAAATAAAATAGATTATATTAAATGT 1263
||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1163 CCGATTTCATTATATGAGAGAATTAGAGAAGATGTAAATAAA-TAGATTATATTACATGT 1221
Query 1264 CTAATCCTCTTATAATTAAGCTCCTCATTCGTTATCATTATAAGAT-AGAACAGTGACAA 1322
|| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1222 TTATTCCTCTTATAATTAAGCTTCTCATTCGTTATCATTATAA-ATTAGAACAGTGACAA 1280
Query 1323 TTGTCCATTATGTTTTTGTTTCAA---GTTT-ATGTTTTGAGTGTCGCCTATTTTGTAAG 1378
|||||||||||||||||||||||| |||| ||||| ||||||| | |||||||||||
Sbjct 1281 TTGTCCATTATGTTTTTGTTTCAATTAGTTTTATGTTCTGAGTGTTTCTTATTTTGTAAG 1340
Query 1379 GATTATGCTATGAATTCTGAAACTAATTCGAGTTATGA 1416
||||||||||||||||||||||||||||||||||||||
Sbjct 1341 GATTATGCTATGAATTCTGAAACTAATTCGAGTTATGA 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5